CsaV3_7G017260 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G017260
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Spo11/DNA topoisomerase VI, subunit A protein
Location	chr7 : 8042858 .. 8043434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACTCACTTTCCCTTCAATGTTTTCGACCCATTTCCTTTCCAAAAGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTTTGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGGTGCGGGATCTCTCATGCAGGCACACCGCGCACACACACGCACACACACGCACACTGCATTTTCAAATGTTATTTTCTGTATTTCTGATATGTTGAAGGTCATGTTTAACCTGTCAGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAGAGGTACAACATTGGAGGTAAAATTTTCTACCATTACAGCTCTAGTTTTCTTTTATCATTGTTACATGCATTGCCATTTTCTACAAAGAGTACTTCCTCCCTTAGGTTGGAATTGGAGTCAATGCTGGAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCCGACGAGTATTTACCATCCAAAATTGAAAGTGAACTAACACTGTTGAACTCATAG

mRNA sequence

ATGATAACTCACTTTCCCTTCAATGTTTTCGACCCATTTCCTTTCCAAAAGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTTTGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAGAGGTACAACATTGGAGGTTGGAATTGGAGTCAATGCTGGAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCCGACGAGTATTTACCATCCAAAATTGAAAGTGAACTAACACTGTTGAACTCATAG

Coding sequence (CDS)

ATGATAACTCACTTTCCCTTCAATGTTTTCGACCCATTTCCTTTCCAAAAGCAAATGGCCTACGATGCAAAGTATCTCAAAATCCCACAACTACGATGGCTTGGAGCTTTTGCTTCAGATTTTGAGAAATACAATCTGCCAGAACAATGTCTCATCCCATTGACTTTCAAGGACAAGAGTAGAACTGAAGCCTTGTTACAAAGATGCTACTTGCGTAGAGAGGTACAACATTGGAGGTTGGAATTGGAGTCAATGCTGGAAAGAGGGGTGAAATTTGAGATAGAAGCACTGTCTGTGCACAATATTTCATTTTTGTCCGACGAGTATTTACCATCCAAAATTGAAAGTGAACTAACACTGTTGAACTCATAG

Protein sequence

MITHFPFNVFDPFPFQKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELTLLNS

Homology

[Close]

BLAST of CsaV3_7G017260 vs. NCBI nr
Match: XP_008462989.1 (PREDICTED: meiotic recombination protein SPO11-1 isoform X1 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 245 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 305 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 360

[Close]

BLAST of CsaV3_7G017260 vs. NCBI nr
Match: XP_008462990.1 (PREDICTED: meiotic recombination protein SPO11-1 isoform X2 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 242 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 301

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 302 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 357

[Close]

BLAST of CsaV3_7G017260 vs. NCBI nr
Match: XP_016902961.1 (PREDICTED: meiotic recombination protein SPO11-1 isoform X3 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 211 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 270

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 271 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 326

[Close]

BLAST of CsaV3_7G017260 vs. NCBI nr
Match: XP_016902962.1 (PREDICTED: meiotic recombination protein SPO11-1 isoform X4 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 208 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 267

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 268 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 323

[Close]

BLAST of CsaV3_7G017260 vs. NCBI nr
Match: XP_022976331.1 (meiotic recombination protein SPO11-1 [Cucurbita maxima])

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 91/116 (78.45%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAKYL+IPQL WLGAFASD + YNLP+QCLIPLT +DK RTE
Sbjct: 245 YGFDILTTYRFGSMQMAYDAKYLRIPQLHWLGAFASDSDTYNLPQQCLIPLTLEDKRRTE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALL RCYLRREV HWRLELESML+RGVKFEIEALSVHNISFLS+EYLPSKIESELT
Sbjct: 305 ALLLRCYLRREVPHWRLELESMLQRGVKFEIEALSVHNISFLSEEYLPSKIESELT 360

[Close]

BLAST of CsaV3_7G017260 vs. TAIR10
Match: AT3G13170.1 (Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 146.0 bits (367), Expect = 1.6e-35
Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F +   + F   QMAYD + L+ P ++WLGAF SD E Y++P+QCL+PLT +DK RTE
Sbjct: 245 YGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           A+L RCYL+RE+  WRLELE+ML+RGVKFEIEALSVH++SFLS+ Y+PSKI  E++
Sbjct: 305 AMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIRREVS 360

[Close]

BLAST of CsaV3_7G017260 vs. TAIR10
Match: AT5G02820.1 (Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 17  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQ 76
           K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T +D    + +L+  ++++   
Sbjct: 325 KNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKN-P 384

Query: 77  HWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE 118
            W  EL  M++   K EI+ALS     +LS+ YLP K++ +
Sbjct: 385 GWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQ 424

[Close]

BLAST of CsaV3_7G017260 vs. TAIR10
Match: AT1G63990.1 (sporulation 11-2)

HSP 1 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 27/84 (32.14%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 31  LRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQHWRLELESMLERGV 90
           ++W+G    D     +PE+ L+PL  KD    ++LL    L+   +++  EL  M++ G 
Sbjct: 300 VKWIGLRGDDLNL--IPEESLVPLKPKDSQIAKSLLSSKILQ---ENYIEELSLMVQTGK 359

Query: 91  KFEIEALSVHNISFLSDEYLPSKI 115
           + EIEAL  H  ++L  +Y+ +KI
Sbjct: 360 RAEIEALYCHGYNYLG-KYIATKI 377

[Close]

BLAST of CsaV3_7G017260 vs. Swiss-Prot
Match: sp|Q9M4A2|SPO11_ARATH (Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana OX=3702 GN=SPO11-1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-34
Identity = 69/116 (59.48%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F +   + F   QMAYD + L+ P ++WLGAF SD E Y++P+QCL+PLT +DK RTE
Sbjct: 245 YGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           A+L RCYL+RE+  WRLELE+ML+RGVKFEIEALSVH++SFLS+ Y+PSKI  E++
Sbjct: 305 AMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIRREVS 360

[Close]

BLAST of CsaV3_7G017260 vs. Swiss-Prot
Match: sp|Q5ZPV8|SPO11_ORYSI (Meiotic recombination protein SPO11-1 OS=Oryza sativa subsp. indica OX=39946 GN=SPO11-1 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-30
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   Q+AYDA +L++P +RWLG F SDFE Y LP+ CL+ L+ +D+ + E
Sbjct: 265 YGFDILATYKFGSLQLAYDANFLRVPDIRWLGVFTSDFEDYRLPDCCLLHLSSEDRRKAE 324

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIE 116
            +L RCYL RE   WRLELE+ML++GVKFEIEALS  +ISFLS+EY+P KI+
Sbjct: 325 GILSRCYLHREAPQWRLELEAMLQKGVKFEIEALSACSISFLSEEYIPKKIK 376

[Close]

BLAST of CsaV3_7G017260 vs. Swiss-Prot
Match: sp|Q7Y021|SPO11_ORYSJ (Meiotic recombination protein SPO11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-1 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-30
Identity = 61/112 (54.46%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   Q+AYDA +L++P +RWLG F SDFE Y LP+ CL+ L+ +D+ + E
Sbjct: 265 YGFDILATYKFGSLQLAYDANFLRVPDIRWLGVFTSDFEDYRLPDCCLLHLSSEDRRKAE 324

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIE 116
            +L RCYL RE   WRLELE+ML++GVKFEIEALS  +ISFLS+EY+P KI+
Sbjct: 325 GILSRCYLHREAPQWRLELEAMLQKGVKFEIEALSACSISFLSEEYIPKKIK 376

[Close]

BLAST of CsaV3_7G017260 vs. Swiss-Prot
Match: sp|A2XFC1|TOP6A_ORYSI (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 17  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQ 76
           K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T  D    + LL+  ++++  +
Sbjct: 340 KNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQN-E 399

Query: 77  HWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE 118
            W  ELE+ML    K EI+ALS     +L++ YLP K++ +
Sbjct: 400 GWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQ 439

[Close]

BLAST of CsaV3_7G017260 vs. Swiss-Prot
Match: sp|Q0DSV9|TOP6A_ORYSJ (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 17  KQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTEALLQRCYLRREVQ 76
           K M+YD+  L  P ++WLG   SD +KY +PEQC +P+T  D    + LL+  ++++  +
Sbjct: 340 KNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDFVKQN-E 399

Query: 77  HWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESE 118
            W  ELE+ML    K EI+ALS     +L++ YLP K++ +
Sbjct: 400 GWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQ 439

[Close]

BLAST of CsaV3_7G017260 vs. TrEMBL
Match: tr|A0A1S3CI64|A0A1S3CI64_CUCME (meiotic recombination protein SPO11-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501238 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 242 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 301

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 302 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 357

[Close]

BLAST of CsaV3_7G017260 vs. TrEMBL
Match: tr|A0A1S4E3Z9|A0A1S4E3Z9_CUCME (meiotic recombination protein SPO11-1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501238 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 211 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 270

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 271 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 326

[Close]

BLAST of CsaV3_7G017260 vs. TrEMBL
Match: tr|A0A1S3CJR6|A0A1S3CJR6_CUCME (meiotic recombination protein SPO11-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501238 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 245 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 305 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 360

[Close]

BLAST of CsaV3_7G017260 vs. TrEMBL
Match: tr|A0A1S4E415|A0A1S4E415_CUCME (meiotic recombination protein SPO11-1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103501238 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 92/116 (79.31%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK L+IPQL+W+GAFASD EKY+LPEQCLIPLT KDK RTE
Sbjct: 208 YGFDILTTYRFGSMQMAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKDKRRTE 267

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIESELT 120
           ALLQRCYLRREV HWRLEL+SML+RGVKFEIEALSVHNISFLSD YLPSKIESELT
Sbjct: 268 ALLQRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSDHYLPSKIESELT 323

[Close]

BLAST of CsaV3_7G017260 vs. TrEMBL
Match: tr|A0A2R6PR69|A0A2R6PR69_ACTCH (Meiotic recombination protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc21583 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.5e-35
Identity = 73/112 (65.18%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 5   FPFNVFDPFPF-QKQMAYDAKYLKIPQLRWLGAFASDFEKYNLPEQCLIPLTFKDKSRTE 64
           + F++   + F   QMAYDAK+L++P++ WLGAF SD EKY LP+QCL+PLT +DKSR E
Sbjct: 245 YGFDILTTYRFGSMQMAYDAKFLRVPEIHWLGAFPSDSEKYGLPQQCLLPLTAEDKSRIE 304

Query: 65  ALLQRCYLRREVQHWRLELESMLERGVKFEIEALSVHNISFLSDEYLPSKIE 116
           A+L RCYL++EV HWR ELE +L+RGVKFEIEALSVH++SFLS+EY+PSKIE
Sbjct: 305 AMLLRCYLQQEVPHWRFELELLLQRGVKFEIEALSVHSLSFLSEEYIPSKIE 356

The following BLAST results are available for this feature:

BLAST of CsaV3_7G017260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462989.1	1.7e-43	79.31	PREDICTED: meiotic recombination protein SPO11-1 isoform X1 [Cucumis melo]	[more]
XP_008462990.1	1.7e-43	79.31	PREDICTED: meiotic recombination protein SPO11-1 isoform X2 [Cucumis melo]	[more]
XP_016902961.1	1.7e-43	79.31	PREDICTED: meiotic recombination protein SPO11-1 isoform X3 [Cucumis melo]	[more]
XP_016902962.1	1.7e-43	79.31	PREDICTED: meiotic recombination protein SPO11-1 isoform X4 [Cucumis melo]	[more]
XP_022976331.1	2.9e-43	78.45	meiotic recombination protein SPO11-1 [Cucurbita maxima]	[more]

BLAST of CsaV3_7G017260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13170.1	1.6e-35	59.48	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT5G02820.1	1.5e-14	36.63	Spo11/DNA topoisomerase VI, subunit A protein	[more]
AT1G63990.1	3.2e-04	32.14	sporulation 11-2	[more]

BLAST of CsaV3_7G017260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M4A2\|SPO11_ARATH	2.8e-34	59.48	Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana OX=3702 GN=SPO11-1...	[more]
sp\|Q5ZPV8\|SPO11_ORYSI	1.5e-30	54.46	Meiotic recombination protein SPO11-1 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q7Y021\|SPO11_ORYSJ	1.5e-30	54.46	Meiotic recombination protein SPO11-1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|A2XFC1\|TOP6A_ORYSI	2.5e-14	38.61	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 ...	[more]
sp\|Q0DSV9\|TOP6A_ORYSJ	2.5e-14	38.61	Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPO11-3 P...	[more]

BLAST of CsaV3_7G017260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CI64\|A0A1S3CI64_CUCME	1.1e-43	79.31	meiotic recombination protein SPO11-1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S4E3Z9\|A0A1S4E3Z9_CUCME	1.1e-43	79.31	meiotic recombination protein SPO11-1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3CJR6\|A0A1S3CJR6_CUCME	1.1e-43	79.31	meiotic recombination protein SPO11-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S4E415\|A0A1S4E415_CUCME	1.1e-43	79.31	meiotic recombination protein SPO11-1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2R6PR69\|A0A2R6PR69_ACTCH	1.5e-35	65.18	Meiotic recombination protein like OS=Actinidia chinensis var. chinensis OX=1590...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000737	DNA catabolic process, endonucleolytic

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005694	chromosome

Vocabulary: **INTERPRO**
Term	Definition
IPR036078	Spo11/TopoVI_A_sf
IPR002815	Spo11/TopoVI_A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
biological_process	GO:0007140	male meiosis
biological_process	GO:0043247	telomere maintenance in response to DNA damage
biological_process	GO:0016444	somatic cell DNA recombination
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0032204	regulation of telomere maintenance
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0032504	multicellular organism reproduction
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0000706	meiotic DNA double-strand break processing
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0034090	maintenance of meiotic sister chromatid cohesion
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0031048	chromatin silencing by small RNA
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0019219	regulation of nucleobase-containing compound metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0007127	meiosis I
biological_process	GO:0006310	DNA recombination
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006974	cellular response to DNA damage stimulus
cellular_component	GO:0005694	chromosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G017260.1	CsaV3_7G017260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.1360.10		coord: 16..119 e-value: 3.3E-26 score: 94.1
None	No IPR available	PANTHER	PTHR10848:SF3	MEIOTIC RECOMBINATION PROTEIN SPO11-1	coord: 18..116
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 18..116
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	SSF56726	DNA topoisomerase IV, alpha subunit	coord: 17..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G017260	CmoCh09G010040	Cucurbita moschata (Rifu)	cmocucB0038
CsaV3_7G017260	Cp4.1LG06g08550	Cucurbita pepo (Zucchini)	cpecucB0991
CsaV3_7G017260	MELO3C024924	Melon (DHL92) v3.5.1	cucmeB556

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G017260	Silver-seed gourd	carcucB0924
CsaV3_7G017260	Silver-seed gourd	carcucB0946
CsaV3_7G017260	Cucumber (Gy14) v2	cgybcucB347
CsaV3_7G017260	Cucurbita maxima (Rimu)	cmacucB0052
CsaV3_7G017260	Cucurbita maxima (Rimu)	cmacucB0585
CsaV3_7G017260	Cucurbita moschata (Rifu)	cmocucB0575
CsaV3_7G017260	Cucurbita pepo (Zucchini)	cpecucB0733
CsaV3_7G017260	Bottle gourd (USVL1VR-Ls)	cuclsiB539
CsaV3_7G017260	Melon (DHL92) v3.6.1	cucmedB528
CsaV3_7G017260	Watermelon (Charleston Gray)	cucwcgB549
CsaV3_7G017260	Watermelon (97103) v1	cucwmB594
CsaV3_7G017260	Watermelon (97103) v2	cucwmbB595
CsaV3_7G017260	Wax gourd	cucwgoB734