MELO3C024712.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C024712.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr02 : 21585109 .. 21586067 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATAAGAGTTTCGATTCAACAATTTGATAAGGATGTGACTCAAGAATACATCCATTGGTATAGTAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTACAATTTACAGGGAGATCGAACAATGCAAGACTTCGTGATGTAGCAGATGATCTACAACAATTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGATGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTTCTACGACACAAACACAAAGTCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGAGGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACGTGGATGTAAGTCCATCAACTTCTTACATGCATGGACATAGTCGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAAAGTCGACGTCGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAAATGTAATTTGGTTATTAAAAATTATTTTAATTTACATTTAATTTTTTAATTACGCGTCATTATTAAAAACGGTTTATCTAATTATTTAATTAGTTAGAAATATTCATATAAATTTTGAATTTTAATATCGAAGAGTAATAACAAAATTTAAATTTGTTTGACAAAAAATATTAAAATGAATACA

mRNA sequence

ATGGCAATAAGAGTTTCGATTCAACAATTTGATAAGGATGTGACTCAAGAATACATCCATTGGTATAGTAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGGAGATCGAACAATGCAAGACTTCGTGATGTAGCAGATGATCTACAACAATTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGATGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTTCTACGACACAAACACAAAGTCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGAGGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACGTGGATGTAAGTCCATCAACTTCTTACATGCATGGACATAGTCGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAAAGTCGACGTCGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAAATGTAATTTGGTTATTAAAAATTATTTTAATTTACATTTAATTTTTTAATTACGCGTCATTATTAAAAACGGTTTATCTAATTATTTAATTAGTTAGAAATATTCATATAAATTTTGAATTTTAATATCGAAGAGTAATAACAAAATTTAAATTTGTTTGACAAAAAATATTAAAATGAATACA

Coding sequence (CDS)

ATGGCAATAAGAGTTTCGATTCAACAATTTGATAAGGATGTGACTCAAGAATACATCCATTGGTATAGTAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGGAGATCGAACAATGCAAGACTTCGTGATGTAGCAGATGATCTACAACAATTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGATGTGTTCGAGTGGAAGAAGCTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTTCTACGACACAAACACAAAGTCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGAGGCAGGATATTGTGATTTTGAGGTCGGTATAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACGTGGATGTAAGTCCATCAACTTCTTACATGCATGGACATAGTCGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAAAGTCGACGTCGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

MAIRVSIQQFDKDVTQEYIHWYSNITRLYITRPGAAVGRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH
Homology
[Close]
BLAST of MELO3C024712.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 8.5e-30
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 7   IQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNER 66
           I+QFD DVTQEYIHWY NI++LYIT+PGAA+   RSNN RLR++ADD QQ L+ICN+NE+
Sbjct: 16  IEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQ 75

Query: 67  YMEEIHNMYDLPIVPPPVHRGCVRVEEA-ELDKVYHNVEEVPSTTQTQSQT 115
           YME IH MYD+PIVP PV R    V+E+ +L++V  + EEVP  TQTQ+Q+
Sbjct: 76  YMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 126

[Close]
BLAST of MELO3C024712.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 3.0e-27
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 13  DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72
           DVTQEYIHWY NI++LYIT+PGAA+   RSNN RLR++ADD QQ L+ICN+NE+YME IH
Sbjct: 2   DVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIH 61

Query: 73  NMYDLPIVPPPVHRGCVRVEEA-ELDKVYHNVEEVPSTTQTQSQT 115
            MYD+PIVP PV R    V+E+ +L++V  + EEVP  TQTQ+Q+
Sbjct: 62  YMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 106

[Close]
BLAST of MELO3C024712.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 7   IQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 64
           I+QFD DVTQEYI+WY NI++LYIT+PGAA+   RSNN RLR+VADD QQ L+ICN+NE
Sbjct: 107 IEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C024712.2 vs. NCBI nr
Match: KGN45851.1 (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.5e-13
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 40  SNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYH 99
           SNN  L DVAD  Q  LDI NNNERYMEEIH      IVPP V RG VRVEE ELD++YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEVELDEIYH 77

Query: 100 NVEEVPSTTQTQS 113
           N++E+    QTQS
Sbjct: 78  NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C024712.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 26  TRLYITRPGA-AVGRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 85
           T L IT  G     RS N RL++VADD QQ L+ICN+NE+YME IH MY++ IVP  V R
Sbjct: 148 TALAITLKGTDTCKRSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQR 207

Query: 86  GCVRVEEA-ELDKVYHNVEEVP 106
               V+E+ +L++V  +VEEVP
Sbjct: 208 RRPLVQESNQLEEVVQHVEEVP 229

[Close]
BLAST of MELO3C024712.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.6e-30
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = 0 

Query: 7   IQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNER 66
           I+QFD DVTQEYIHWY NI++LYIT+PGAA+   RSNN RLR++ADD QQ L+ICN+NE+
Sbjct: 16  IEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQ 75

Query: 67  YMEEIHNMYDLPIVPPPVHRGCVRVEEA-ELDKVYHNVEEVPSTTQTQSQT 115
           YME IH MYD+PIVP PV R    V+E+ +L++V  + EEVP  TQTQ+Q+
Sbjct: 76  YMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 126

[Close]
BLAST of MELO3C024712.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 0 

Query: 13  DVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIH 72
           DVTQEYIHWY NI++LYIT+PGAA+   RSNN RLR++ADD QQ L+ICN+NE+YME IH
Sbjct: 2   DVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIH 61

Query: 73  NMYDLPIVPPPVHRGCVRVEEA-ELDKVYHNVEEVPSTTQTQSQT 115
            MYD+PIVP PV R    V+E+ +L++V  + EEVP  TQTQ+Q+
Sbjct: 62  YMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQS 106

[Close]
BLAST of MELO3C024712.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-14
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 7   IQQFDKDVTQEYIHWYSNITRLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNE 64
           I+QFD DVTQEYI+WY NI++LYIT+PGAA+   RSNN RLR+VADD QQ L+ICN+NE
Sbjct: 107 IEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C024712.2 vs. TrEMBL
Match: tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 40  SNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYH 99
           SNN  L DVAD  Q  LDI NNNERYMEEIH      IVPP V RG VRVEE ELD++YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEVELDEIYH 77

Query: 100 NVEEVPSTTQTQS 113
           N++E+    QTQS
Sbjct: 78  NLKELHPMIQTQS 85

[Close]
BLAST of MELO3C024712.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.4e-10
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 26  TRLYITRPGA-AVGRSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 85
           T L IT  G     RS N RL++VADD QQ L+ICN+NE+YME IH MY++ IVP  V R
Sbjct: 141 TALAITLKGTDTCKRSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQR 200

Query: 86  GCVRVEEA-ELDKVYHNVEEVP 106
               V+E+ +L++V  +VEEVP
Sbjct: 201 RRPLVQESNQLEEVVQHVEEVP 222

The following BLAST results are available for this feature:
BLAST of MELO3C024712.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.18.5e-3063.06PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.13.0e-2762.86PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.13.8e-1471.19PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
KGN45851.12.5e-1363.01hypothetical protein Csa_6G014710 [Cucumis sativus][more]
XP_008461670.11.3e-0952.44PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
BLAST of MELO3C024712.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C024712.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C024712.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME5.6e-3063.06mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME2.0e-2762.86GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME2.5e-1471.19serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA1.6e-1363.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1[more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME8.4e-1052.44CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024712.2.1MELO3C024712.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..222

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024712.2Cucurbita maxima (Rimu)cmamedB063
MELO3C024712.2Cucurbita maxima (Rimu)cmamedB120
MELO3C024712.2Cucurbita moschata (Rifu)cmomedB055
MELO3C024712.2Cucurbita moschata (Rifu)cmomedB108
MELO3C024712.2Bottle gourd (USVL1VR-Ls)lsimedB427
MELO3C024712.2Watermelon (Charleston Gray)medwcgB248
MELO3C024712.2Watermelon (97103) v1medwmB285
MELO3C024712.2Silver-seed gourdcarmedB0038
MELO3C024712.2Silver-seed gourdcarmedB0136
MELO3C024712.2Watermelon (97103) v2medwmbB249