MELO3C024167.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C024167.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionAP-1 complex subunit sigma-1-like
Locationchr01 : 4750502 .. 4752723 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGCTTTTAGTGTGGTTCAAAAAACAAAGTCATTAGAGTTTATGCTCGAGATGTACATACGGGTGGAACAATATATACCATCGTAGAGATATATAAGATTCTGTTGTCCTTGACTAGACCGGAGAAGTGGAAATTCTTGTTTCATTTCGTTTGTTCTCAAGCTTGTGAGTTTGTTTCAGCCATGAATTTCTGAATGTTATTTTTGCTCTCTTCTCAAGGACTTTTGTCAATTACCCATAAGTTTTTACTATTGTGGGTTGGATTCCTTTTTGTAGGGCTTAGTTTTTTGGCATCTTTGGTTTGAGGTGTTTTTTGTATGCTCTTTAGCCTTTTCTGTTGCATTCTTTCATTTCTTTTTTCAATGAAAGCGTGGTTTGTCTTTAAACAGTTGTTCTCCTCTTTCCTTGTGCAACTTAAGTTCATTGCTTATATCTTCAACTATTTTTCCTCACAAAAGCAAAGATGACCTAATCAAAATCTTACATAGTTTTCTTAATAAAAACAACTGCTTTCATTGAGGAAAAAAAATGAAAGAATACAAGGTGTTCTAACTGATGTTCTTGGTGTAAATTCCAGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTAGGTCAGCTATTTGCCTCATTCTGTAATTTAATGCTAATAGCTTCTATCAATTTTCAAGCAATGAGAATATTTGTAAAAACATGTTTCCTTTCCATAAAGTTTATTTATTACCTTAATAAGACTTAATTCCCCTAGGATCTATTGGACTTACCACATTATGGCATGTGCTTGCGCTTATGTTCTTGAAACAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGGTACTTCATGGTTTATTGATGTGTTCTGCAACCCACTTCATGGTTTATTGATGTGTTCTGCAACCCAAATTTTTAATATTGTCCATGTTGCATGTTCTAAATATGATAAATGATTCTACTGGACATGCAACGCAGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTAAGTGAATTCAGCTATAGTTCATAAGTTGTTTGAAACTATTCTTCTTGCATCCCCCTCTTTAGTTGACTACCTAAGCTGACACTTAATTTTTTCATTATTATCATCTTTCATTTATGCCTGTAGGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGTATTATTGACTTGTTAATATAAACTATGCACCTTCTCTTCAATATGCATTTCATTGTCTCTGAATTAGTTGCACTTGCAGTGTAGCTTCTGACCATTGAATATTTCTTGATTGGATGTTCACAGTCTTTATACGAAACTTTGAATGCAATTTTAACATTGCAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTCTTTTCTCTTATCTTTGTAATACCTTAGTTAAGATATCTTGTTTTTATGAGAAACATTCAACAATAATCTCATTGATAGAATGAAATTACGCAAGGGCAAATGCGCTGTGAGAGTTACATATTACTTTTTCCAATGTCTCTCACATATTACTTTTTCCAATGTGCAACAAGGGGAATAAGCACAAAAGAAGAAAATTTACACCAAGACAGAAATATACCTTCGTTAAGATTTTAATTTAGCTGACCATATGGTAATTGCTATATCATCATTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGATGAATAACTTGAGAGTGTATGTTTCAGTTTTTGCGAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTATCTCAACTTGTATCAAACAAGTTAATGCCTTATTTTTGCTTATTTCATTTGTTGTATTCCACAAATTGCTTTTTGGAATTTCTAGTAGTTCCATCTACCTGCCTAACTGTTCTCCTCGATTTTTCTATTGTTCATCATATACAAATGTTATTGCTTGCTGGAAATGGTTGATCTCCTATACTTGCTTTC

mRNA sequence

ATAAGCTTTTAGTGTGGTTCAAAAAACAAAGTCATTAGAGTTTATGCTCGAGATGTACATACGGGTGGAACAATATATACCATCGTAGAGATATATAAGATTCTGTTGTCCTTGACTAGACCGGAGAAGTGGAAATTCTTGTTTCATTTCGTTTGTTCTCAAGCTTATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGATGAATAACTTGAGAGTGTATGTTTCAGTTTTTGCGAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTATCTCAACTTGTATCAAACAAGTTAATGCCTTATTTTTGCTTATTTCATTTGTTGTATTCCACAAATTGCTTTTTGGAATTTCTAGTAGTTCCATCTACCTGCCTAACTGTTCTCCTCGATTTTTCTATTGTTCATCATATACAAATGTTATTGCTTGCTGGAAATGGTTGATCTCCTATACTTGCTTTC

Coding sequence (CDS)

ATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Homology
[Close]
BLAST of MELO3C024167.2 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 8.0e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. NCBI nr
Match: XP_004144562.1 (PREDICTED: AP-1 complex subunit sigma-1 [Cucumis sativus] >KGN43383.1 hypothetical protein Csa_7G029970 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 2.3e-61
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 3.0e-61
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. NCBI nr
Match: XP_022952715.1 (AP-1 complex subunit sigma-1 [Cucurbita moschata] >XP_022969279.1 AP-1 complex subunit sigma-1-like [Cucurbita maxima] >XP_023554628.1 AP-1 complex subunit sigma-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 8.9e-61
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. NCBI nr
Match: XP_022928147.1 (AP-1 complex subunit sigma-2 isoform X3 [Cucurbita moschata] >XP_022928148.1 AP-1 complex subunit sigma-2 isoform X3 [Cucurbita moschata])

HSP 1 Score: 240.4 bits (612), Expect = 3.4e-60
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELE+LEIIHHYVEILDRYFGS
Sbjct: 7   MILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGS 66

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 67  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 126

Query: 121 QATK 125
           QATK
Sbjct: 127 QATK 130

[Close]
BLAST of MELO3C024167.2 vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 230.7 bits (587), Expect = 4.8e-61
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QAT 124
           QAT
Sbjct: 158 QAT 160

[Close]
BLAST of MELO3C024167.2 vs. TAIR10
Match: AT2G17380.1 (associated protein 19)

HSP 1 Score: 229.6 bits (584), Expect = 1.1e-60
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  VILNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +++NR  K  NFVE+R  K +Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +
Sbjct: 38  LVVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSN 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL 105
           VCELDL+FNFHK Y ILDE ++AGELQE+SK+ +   ++  + L
Sbjct: 98  VCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMSELEKL 141

[Close]
BLAST of MELO3C024167.2 vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-22
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 3   LNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVC 62
           L R  + C+FVE R  K VY+RYASL+F + +D D+NEL +LE IH  VE +D++FG+VC
Sbjct: 41  LARNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVC 100

Query: 63  ELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD 103
           ELD++F+  KA+++L+E+++ G + E+SK  +   I   D
Sbjct: 101 ELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMD 140

[Close]
BLAST of MELO3C024167.2 vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein)

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 43/125 (34.40%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGL-----KAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILD 60
           ++ +R   + NF+E   L     + VYK YA+LYF +  D  +NEL +L++I   VE LD
Sbjct: 38  VLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLD 97

Query: 61  RYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSI 120
           + F +VCELD++FN+ K + +LDE++  G++ E+S   V + +  + S +E A    S +
Sbjct: 98  KCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAV-EEISKLEAASNSISLV 157

[Close]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match: sp|O23685|AP1S2_ARATH (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-60
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QAT 124
           QAT
Sbjct: 158 QAT 160

[Close]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match: sp|Q8LEZ8|AP1S1_ARATH (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.9e-59
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  VILNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match: sp|B0G185|AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-43
Identity = 81/106 (76.42%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           M+LNR PKLCNF+EW+  K ++KRYASLYF +C D++DNEL VLEIIHH+VEILDRYFG+
Sbjct: 39  MVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGN 98

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE 107
           VCELDLIFNFHKAYYILDEL++AGELQE+SKKTV RLI+ QD+L+E
Sbjct: 99  VCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144

[Close]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match: sp|Q3ZBS3|AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 0 

Query: 2   ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSV 61
           +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSV
Sbjct: 38  VLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97

Query: 62  CELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 111
           CELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 98  CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match: sp|Q9DB50|AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 73/109 (66.97%), Postives = 86/109 (78.90%), Query Frame = 0 

Query: 2   ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSV 61
           +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSV
Sbjct: 38  VLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97

Query: 62  CELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 111
           CELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 98  CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]
BLAST of MELO3C024167.2 vs. TrEMBL
Match: tr|A0A1S3CGG1|A0A1S3CGG1_CUCME (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.3e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. TrEMBL
Match: tr|A0A0A0K1P7|A0A0A0K1P7_CUCSA (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. TrEMBL
Match: tr|A0A2P2LCP5|A0A2P2LCP5_RHIMU (AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.1e-59
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +IL RGPKLCNFVEWRG K VYKRYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGS
Sbjct: 38  VILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. TrEMBL
Match: tr|A0A1U8JU65|A0A1U8JU65_GOSHI (AP complex subunit sigma OS=Gossypium hirsutum OX=3635 GN=LOC107908992 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLEIIHH+VEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of MELO3C024167.2 vs. TrEMBL
Match: tr|A0A0D2RJE0|A0A0D2RJE0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G215200 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLEIIHH+VEILDRYFGS
Sbjct: 109 VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 168

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 169 VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 228

Query: 121 QATK 125
           QATK
Sbjct: 229 QATK 232

The following BLAST results are available for this feature:
BLAST of MELO3C024167.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008462009.18.0e-62100.00PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo][more]
XP_004144562.12.3e-6199.19PREDICTED: AP-1 complex subunit sigma-1 [Cucumis sativus] >KGN43383.1 hypothetic... [more]
XP_022135730.13.0e-6198.39AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ... [more]
XP_022952715.18.9e-6198.39AP-1 complex subunit sigma-1 [Cucurbita moschata] >XP_022969279.1 AP-1 complex s... [more]
XP_022928147.13.4e-6096.77AP-1 complex subunit sigma-2 isoform X3 [Cucurbita moschata] >XP_022928148.1 AP-... [more]
BLAST of MELO3C024167.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35410.24.8e-6192.68Clathrin adaptor complex small chain family protein[more]
AT2G17380.11.1e-6091.13associated protein 19[more]
AT1G47830.14.9e-2953.85SNARE-like superfamily protein[more]
AT2G19790.15.8e-2246.00SNARE-like superfamily protein[more]
AT3G50860.16.2e-1634.40Clathrin adaptor complex small chain family protein[more]
BLAST of MELO3C024167.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23685|AP1S2_ARATH8.7e-6092.68AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=... [more]
sp|Q8LEZ8|AP1S1_ARATH1.9e-5991.13AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=... [more]
sp|B0G185|AP1S2_DICDI3.3e-4376.42AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ... [more]
sp|Q3ZBS3|AP1S2_BOVIN1.0e-3666.97AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1[more]
sp|Q9DB50|AP1S2_MOUSE1.0e-3666.97AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1[more]
BLAST of MELO3C024167.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CGG1|A0A1S3CGG1_CUCME5.3e-62100.00AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1[more]
tr|A0A0A0K1P7|A0A0A0K1P7_CUCSA1.5e-6199.19AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1[more]
tr|A0A2P2LCP5|A0A2P2LCP5_RHIMU1.1e-5995.97AP complex subunit sigma OS=Rhizophora mucronata OX=61149 PE=3 SV=1[more]
tr|A0A1U8JU65|A0A1U8JU65_GOSHI1.4e-5995.16AP complex subunit sigma OS=Gossypium hirsutum OX=3635 GN=LOC107908992 PE=3 SV=1[more]
tr|A0A0D2RJE0|A0A0D2RJE0_GOSRA1.4e-5995.16Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_005G2... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030117 membrane coat
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024167.2.1MELO3C024167.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 2..103
e-value: 2.2E-39
score: 134.6
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 1..120
e-value: 3.3E-46
score: 158.8
NoneNo IPR availablePANTHERPTHR11753:SF32AP-1 COMPLEX SUBUNIT SIGMA-1-RELATEDcoord: 1..121
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..115
e-value: 4.3E-50
score: 167.4
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..121
IPR011012Longin-like domain superfamilySUPERFAMILYSSF64356SNARE-likecoord: 2..102

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024167.2Csa7G029970Cucumber (Chinese Long) v2cumedB509
MELO3C024167.2CSPI07G02400Wild cucumber (PI 183967)cpimedB523
MELO3C024167.2Cucsa.100030Cucumber (Gy14) v1cgymedB119
MELO3C024167.2CmaCh11G012970Cucurbita maxima (Rimu)cmamedB108
MELO3C024167.2CmaCh19G008280Cucurbita maxima (Rimu)cmamedB534
MELO3C024167.2CmoCh19G008460Cucurbita moschata (Rifu)cmomedB521
MELO3C024167.2CmoCh11G018250Cucurbita moschata (Rifu)cmomedB093
MELO3C024167.2Lsi11G013190Bottle gourd (USVL1VR-Ls)lsimedB101
MELO3C024167.2Cp4.1LG04g04240Cucurbita pepo (Zucchini)cpemedB717
MELO3C024167.2Cp4.1LG15g06650Cucurbita pepo (Zucchini)cpemedB261
MELO3C024167.2CsGy7G002090Cucumber (Gy14) v2cgybmedB465
MELO3C024167.2Cla015715Watermelon (97103) v1medwmB233
MELO3C024167.2ClCG02G003150Watermelon (Charleston Gray)medwcgB190
MELO3C024167.2Cla97C02G029660Watermelon (97103) v2medwmbB164
MELO3C024167.2Bhi05G001325Wax gourdmedwgoB212
MELO3C024167.2Carg18080Silver-seed gourdcarmedB1050
MELO3C024167.2Carg04124Silver-seed gourdcarmedB0204
MELO3C024167.2CsaV3_7G002260Cucumber (Chinese Long) v3cucmedB536
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024167.2Cucumber (Gy14) v1cgymedB180
MELO3C024167.2Cucurbita maxima (Rimu)cmamedB593
MELO3C024167.2Wild cucumber (PI 183967)cpimedB450
MELO3C024167.2Cucumber (Chinese Long) v2cumedB442
MELO3C024167.2Melon (DHL92) v3.6.1medmedB039
MELO3C024167.2Bottle gourd (USVL1VR-Ls)lsimedB067