Cp4.1LG15g06650 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g06650
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP-1 complex subunit sigma-1
LocationCp4.1LG15 : 7290831 .. 7292553 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAGTAACTTAAGTTTAGTGTTTATATCTTCAAATCTTCGTTTCCCACACAAGAAAAGACGGCTTAATCTATACCTTCCATGGTGTTCTAACTGATGGTGGTGTAAATATCCAGATTCACTTCGTGCTTCTTATAAGCAGACAAGGAAAAGTGAGGTTGACGAAATGGTATTCTCCTTATACTCAGAAGGAGAGATCTAAGGTAAAGCTATTTGCCTAATTCTGTAATTTAATGCTAATAGGTTCTTTTAATTTCCAGCAATGAGAATATTTGCAATTTCTTGTTTGCTTTCCACACGCCCACAAAGTTTATTTGCTTTAATAAGTCTTAGTTCCCCTAGGATCTATTGGACTTACCACATTATGACATGTGCTTGTGTCTGCTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGGTACGTCATGGCGTATTGATGTGTTCTGCAATCCAAATCTTTAACTTGTCCATGTTGCTCGGTCTAAGATGATTAATAATTTTACTGTTCGTGTAATGCAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTCGGCAGTGTAAGTGAATTAAATTTTAGTTCGTAAGTTGTTCGAGACAATTCTTTTTGCACCATCTCTTTAACTGACATTTAGTTTCTTCATTATTATGGTCTTTCATTTATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTTACTTGCTTAAGCTGCACCTTTCTTTAATTAGCAATCCATTGCCTCTGGCCCGCCAGACATTGGTATTTTGTGTAAGCCCGATGCATCTGAATTACATGCACTCAGCTTCTCGCCAGTTAACTTTTCTTGAGTAGATGTTCACGTCCTTTATATGAAACTTTGAATGTGTTGTTTATTTATTTTAACATTGAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTCTCTTCTTTATCTTTGCAGTACCTTAGTTATGATTTCAATTCAGCTGATGATAAGGTAATTGATATTCCATCGTAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAGGAACACTAAAATGTATGTTTCAGTTTTTTGGTGAATTGAGTTGTTCTGAAGCATTGTAATTATATGTTATCTGGACTTGTATCATACAAGTGAATGCCTTGTTTTTGCTTATTTTCATTTGTAGTATTACACAAATTGCTGGTGTTCTAGTGAGTTCACCTGCCTGGTTAAATGTTTGCTGGATTGTTCTATTGTTGATCACAAATACAAACGTTATTGCTTGCTAGAAGTGTTCGATCTCTGTTTCTTACCATAAGCCTTCGGCAGCCATGCTTTAGAAATGATTGTCTATCCTGCTTGCTTTCACATTTTCCTTGTATGTTACATCTATCCTTGCCTTACCACAGCTTGCACCTTGCCTTCAGTTCCAATATCTTCTTTTATTTGGTTAGCCCAAGATTTGGACACTCTTTTAGTTTTCCTCTTATTT

mRNA sequence

TGGAGTAACTTAAGTTTAGTGTTTATATCTTCAAATCTTCGTTTCCCACACAAGAAAAGACGGCTTAATCTATACCTTCCATGGTGTTCTAACTGATGGTGGTGTAAATATCCAGATTCACTTCGTGCTTCTTATAAGCAGACAAGGAAAAGTGAGGTTGACGAAATGGTATTCTCCTTATACTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAGGAACACTAAAATGTATGTTTCAGTTTTTTGGTGAATTGAGTTGTTCTGAAGCATTGTAATTATATGTTATCTGGACTTGTATCATACAAGTGAATGCCTTGTTTTTGCTTATTTTCATTTGTAGTATTACACAAATTGCTGGTGTTCTAGTGAGTTCACCTGCCTGGTTAAATGTTTGCTGGATTGTTCTATTGTTGATCACAAATACAAACGTTATTGCTTGCTAGAAGTGTTCGATCTCTGTTTCTTACCATAAGCCTTCGGCAGCCATGCTTTAGAAATGATTGTCTATCCTGCTTGCTTTCACATTTTCCTTGTATGTTACATCTATCCTTGCCTTACCACAGCTTGCACCTTGCCTTCAGTTCCAATATCTTCTTTTATTTGGTTAGCCCAAGATTTGGACACTCTTTTAGTTTTCCTCTTATTT

Coding sequence (CDS)

ATGATTCTAAATCGGGGGCCTAAGCTCTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTATATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGGTCCTTGAATGTATTCATCATTTCGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATACTGGATGAGCTTCTAATAGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACAGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCGCAGGCCACCAAGTAG

Protein sequence

MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Homology
[Close]
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match: AP1S2_ARATH (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 9.5e-59
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QAT 124
           QAT
Sbjct: 158 QAT 160

[Close]
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match: AP1S1_ARATH (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-58
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  VILNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.3e-43
Identity = 81/106 (76.42%), Postives = 96/106 (90.57%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           M+LNR PKLCNF+EW+  K ++KRYASLYF +C D++DNEL VLE IHHFVEILDRYFG+
Sbjct: 39  MVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGN 98

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVE 107
           VCELDLIFNFHKAYYILDEL++AGELQE+SKKTV RLI+ QD+L+E
Sbjct: 99  VCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144

[Close]
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-35
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 2   ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSV 61
           +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LE IH +VE+LD+YFGSV
Sbjct: 38  VLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97

Query: 62  CELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 111
           CELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 98  CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-35
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 2   ILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSV 61
           +L R PK+C+F+EWR LK VYKRYASLYFC  I+  DNEL  LE IH +VE+LD+YFGSV
Sbjct: 38  VLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSV 97

Query: 62  CELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE 111
           CELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 98  CELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match: A0A0A0K1P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029970 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.2e-61
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match: A0A0D2PX90_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G215200 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 108 VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 167

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 168 VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 227

Query: 121 QATK 125
           QATK
Sbjct: 228 QATK 231

[Close]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match: A0A0D2RJE0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G215200 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 109 VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 168

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 169 VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 228

Query: 121 QATK 125
           QATK
Sbjct: 229 QATK 232

[Close]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match: B9RKW9_RICCO (Clathrin coat assembly protein ap19, putative OS=Ricinus communis GN=RCOM_1563770 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-59
Identity = 119/124 (95.97%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +IL RGPKLCNFVEWRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 38  VILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match: A0A067LR17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10776 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.0e-59
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +IL RGPKLCNFVEWRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 38  VILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYY+LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYVLDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match: AT4G35410.2 (AT4G35410.2 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 227.3 bits (578), Expect = 5.4e-60
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QAT 124
           QAT
Sbjct: 158 QAT 160

[Close]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match: AT2G17380.1 (AT2G17380.1 associated protein 19)

HSP 1 Score: 226.1 bits (575), Expect = 1.2e-59
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNF+EWRG K VYKRYASLYFCMCID+ DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  VILNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match: AT1G47830.1 (AT1G47830.1 SNARE-like superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-29
Identity = 57/104 (54.81%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +++NR  K  NFVE+R  K +Y+RYA L+F +C+D  DNEL  LE IH FVEILD +F +
Sbjct: 38  LVVNRDAKFTNFVEFRTHKVIYRRYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSN 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL 105
           VCELDL+FNFHK Y ILDE ++AGELQE+SK+ +   ++  + L
Sbjct: 98  VCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMSELEKL 141

[Close]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match: AT2G19790.1 (AT2G19790.1 SNARE-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.6e-22
Identity = 46/100 (46.00%), Postives = 71/100 (71.00%), Query Frame = 1 

Query: 3   LNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVC 62
           L R  + C+FVE R  K VY+RYASL+F + +D D+NEL +LE IH  VE +D++FG+VC
Sbjct: 41  LARNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVC 100

Query: 63  ELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQD 103
           ELD++F+  KA+++L+E+++ G + E+SK  +   I   D
Sbjct: 101 ELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMD 140

[Close]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match: AT3G50860.1 (AT3G50860.1 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 43/125 (34.40%), Postives = 73/125 (58.40%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGL-----KAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILD 60
           ++ +R   + NF+E   L     + VYK YA+LYF +  D  +NEL +L+ I   VE LD
Sbjct: 38  VLCSRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLD 97

Query: 61  RYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSI 120
           + F +VCELD++FN+ K + +LDE++  G++ E+S   V + +  + S +E A    S +
Sbjct: 98  KCFSNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAV-EEISKLEAASNSISLV 157

[Close]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match: gi|659124154|ref|XP_008462009.1| (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.6e-61
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match: gi|449453636|ref|XP_004144562.1| (PREDICTED: AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELEVLE IHH+VEILDRYFGS
Sbjct: 38  MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match: gi|823160113|ref|XP_012479897.1| (PREDICTED: AP-1 complex subunit sigma-2 [Gossypium raimondii])

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 38  VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 97

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 98  VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 157

Query: 121 QATK 125
           QATK
Sbjct: 158 QATK 161

[Close]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match: gi|763764690|gb|KJB31944.1| (hypothetical protein B456_005G215200, partial [Gossypium raimondii])

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 109 VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 168

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 169 VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 228

Query: 121 QATK 125
           QATK
Sbjct: 229 QATK 232

[Close]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match: gi|763764689|gb|KJB31943.1| (hypothetical protein B456_005G215200, partial [Gossypium raimondii])

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 

Query: 1   MILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS 60
           +ILNRGPKLCNFV+WRG K VYKRYASLYFCMCIDQDDNELEVLE IHHFVEILDRYFGS
Sbjct: 108 VILNRGPKLCNFVDWRGFKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGS 167

Query: 61  VCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 120
           VCELDLIFNFHKAYYILDELL+AGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA
Sbjct: 168 VCELDLIFNFHKAYYILDELLLAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIA 227

Query: 121 QATK 125
           QATK
Sbjct: 228 QATK 231

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g06650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AP1S2_ARATH9.5e-5991.06AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana GN=AAP19-2 PE=2 SV=1[more]
AP1S1_ARATH2.1e-5889.52AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=1 SV=1[more]
AP1S2_DICDI4.3e-4376.42AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1[more]
AP1S2_MOUSE1.1e-3565.14AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=1 SV=1[more]
AP1S2_BOVIN1.1e-3565.14AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1[more]
BLAST of Cp4.1LG15g06650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1P7_CUCSA9.2e-6197.58Uncharacterized protein OS=Cucumis sativus GN=Csa_7G029970 PE=4 SV=1[more]
A0A0D2PX90_GOSRA1.3e-5995.16Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G215200 PE=... [more]
A0A0D2RJE0_GOSRA1.3e-5995.16Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G215200 PE=... [more]
B9RKW9_RICCO2.3e-5995.97Clathrin coat assembly protein ap19, putative OS=Ricinus communis GN=RCOM_156377... [more]
A0A067LR17_JATCU3.0e-5995.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10776 PE=4 SV=1[more]
BLAST of Cp4.1LG15g06650 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G35410.25.4e-6091.06 Clathrin adaptor complex small chain family protein[more]
AT2G17380.11.2e-5989.52 associated protein 19[more]
AT1G47830.11.7e-2954.81 SNARE-like superfamily protein[more]
AT2G19790.17.6e-2246.00 SNARE-like superfamily protein[more]
AT3G50860.11.1e-1534.40 Clathrin adaptor complex small chain family protein[more]
BLAST of Cp4.1LG15g06650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124154|ref|XP_008462009.1|4.6e-6198.39PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo][more]
gi|449453636|ref|XP_004144562.1|1.3e-6097.58PREDICTED: AP-1 complex subunit sigma-1 [Cucumis sativus][more]
gi|823160113|ref|XP_012479897.1|1.9e-5995.16PREDICTED: AP-1 complex subunit sigma-2 [Gossypium raimondii][more]
gi|763764690|gb|KJB31944.1|1.9e-5995.16hypothetical protein B456_005G215200, partial [Gossypium raimondii][more]
gi|763764689|gb|KJB31943.1|1.9e-5995.16hypothetical protein B456_005G215200, partial [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0030117 membrane coat
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g06650.1Cp4.1LG15g06650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 2..102
score: 3.62
IPR016635Adaptor protein complex, sigma subunitPIRPIRSF015588AP_complex_sigmacoord: 1..115
score: 2.8
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..124
score: 4.2E
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 2..103
score: 1.9
NoneNo IPR availableunknownCoilCoilcoord: 105..124
scor
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 2..104
score: 4.6
NoneNo IPR availablePANTHERPTHR11753:SF16SUBFAMILY NOT NAMEDcoord: 1..124
score: 4.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g06650Cucsa.100030Cucumber (Gy14) v1cgycpeB0206
Cp4.1LG15g06650CmaCh11G012970Cucurbita maxima (Rimu)cmacpeB117
Cp4.1LG15g06650CmaCh19G008280Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g06650CmoCh19G008460Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g06650CmoCh11G018250Cucurbita moschata (Rifu)cmocpeB098
Cp4.1LG15g06650Cla015715Watermelon (97103) v1cpewmB268
Cp4.1LG15g06650Csa7G029970Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g06650MELO3C024167Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g06650ClCG02G003150Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g06650CSPI07G02400Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g06650MELO3C024167.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g06650CsaV3_7G002260Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g06650Bhi05G001325Wax gourdcpewgoB0326
Cp4.1LG15g06650Carg04124Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g06650Cucumber (Chinese Long) v2cpecuB250
Cp4.1LG15g06650Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g06650Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g06650Melon (DHL92) v3.5.1cpemeB213
Cp4.1LG15g06650Cucumber (Gy14) v2cgybcpeB751
Cp4.1LG15g06650Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g06650Silver-seed gourdcarcpeB0484
Cp4.1LG15g06650Silver-seed gourdcarcpeB1189
Cp4.1LG15g06650Silver-seed gourdcarcpeB1480
Cp4.1LG15g06650Silver-seed gourdcarcpeB1481
Cp4.1LG15g06650Cucumber (Chinese Long) v3cpecucB0316
Cp4.1LG15g06650Wax gourdcpewgoB0336
Cp4.1LG15g06650Cucurbita pepo (Zucchini)cpecpeB280
Cp4.1LG15g06650Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g06650Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g06650Cucurbita pepo (Zucchini)cpecpeB272
Cp4.1LG15g06650Cucumber (Gy14) v1cgycpeB0287
Cp4.1LG15g06650Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g06650Cucurbita maxima (Rimu)cmacpeB560
Cp4.1LG15g06650Cucurbita maxima (Rimu)cmacpeB613
Cp4.1LG15g06650Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g06650Cucurbita moschata (Rifu)cmocpeB513
Cp4.1LG15g06650Cucurbita moschata (Rifu)cmocpeB562
Cp4.1LG15g06650Wild cucumber (PI 183967)cpecpiB251