MELO3C023967 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023967
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDihydropyrimidine dehydrogenase [NADP(+)]
Locationchr4 : 24173734 .. 24173943 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

mRNA sequence

ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

Coding sequence (CDS)

ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

Protein sequence

MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVVPLLLCVFGV*
Homology
[Close]
BLAST of MELO3C023967 vs. TrEMBL
Match: A0A0A0LCE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-27
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVV 60
          MASSMRFPH VVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAG AFPSSVA GFNFVV
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCVFGV 70
          PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69

[Close]
BLAST of MELO3C023967 vs. NCBI nr
Match: gi|700203466|gb|KGN58599.1| (hypothetical protein Csa_3G697920 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-27
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 1  MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVV 60
          MASSMRFPH VVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAG AFPSSVA GFNFVV
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCVFGV 70
          PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69

The following BLAST results are available for this feature:
BLAST of MELO3C023967 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCE5_CUCSA2.9e-2795.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697920 PE=4 SV=1[more]
BLAST of MELO3C023967 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203466|gb|KGN58599.1|4.1e-2795.65hypothetical protein Csa_3G697920 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023967T1MELO3C023967T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023967Csa3G697920Cucumber (Chinese Long) v2cumeB207
MELO3C023967Bhi11G001188Wax gourdmewgoB374
MELO3C023967CSPI03G29750Wild cucumber (PI 183967)cpimeB199
MELO3C023967CsGy3G027580Cucumber (Gy14) v2cgybmeB172
MELO3C023967CsaV3_3G032230Cucumber (Chinese Long) v3cucmeB205
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023967Cucurbita pepo (Zucchini)cpemeB133
MELO3C023967Cucurbita pepo (Zucchini)cpemeB308
MELO3C023967Cucurbita pepo (Zucchini)cpemeB517
MELO3C023967Cucurbita pepo (Zucchini)cpemeB566
MELO3C023967Bottle gourd (USVL1VR-Ls)lsimeB212
MELO3C023967Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C023967Cucumber (Gy14) v2cgybmeB488
MELO3C023967Silver-seed gourdcarmeB0360
MELO3C023967Silver-seed gourdcarmeB0457
MELO3C023967Silver-seed gourdcarmeB0755
MELO3C023967Silver-seed gourdcarmeB0811
MELO3C023967Cucumber (Chinese Long) v3cucmeB570
MELO3C023967Watermelon (97103) v2mewmbB316
MELO3C023967Wax gourdmewgoB440
MELO3C023967Melon (DHL92) v3.5.1memeB083
MELO3C023967Cucumber (Gy14) v1cgymeB354
MELO3C023967Cucurbita maxima (Rimu)cmameB226
MELO3C023967Cucurbita maxima (Rimu)cmameB333
MELO3C023967Cucurbita maxima (Rimu)cmameB426
MELO3C023967Cucurbita maxima (Rimu)cmameB842
MELO3C023967Cucurbita moschata (Rifu)cmomeB210
MELO3C023967Cucurbita moschata (Rifu)cmomeB326
MELO3C023967Cucurbita moschata (Rifu)cmomeB416
MELO3C023967Cucurbita moschata (Rifu)cmomeB824
MELO3C023967Wild cucumber (PI 183967)cpimeB559
MELO3C023967Cucumber (Chinese Long) v2cumeB551
MELO3C023967Watermelon (Charleston Gray)mewcgB315
MELO3C023967Watermelon (97103) v1mewmB346