MELO3C023360 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023360
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
Locationchr1 : 33634557 .. 33634878 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCAATCTTTGTATTATGCTTGATCTTGAGCTTACTAGTTGTAGGGAAGTCGGAACCAGAGAACGACGTCGGCAGCGGCAGTGGCAGTGGCAACGGCAATGACAACGGCAGCAGCGGTTGCTACATAAGCTGTTTGCTAAATGACTGCAGAAAGGGTGTTTTCCAATGTGCGGTTTGCCTTGGGAAATGTGCAGTAGTAGGGGCCGAATCGTCATACTCATCGAGGAGCAATCGAATGGACAATCATGACTTTTGTAAAATTGGCTGTACCACTTCTCTTTGCACTAAGTTTGCCCTTCCTAACAACCAACACTCAG

mRNA sequence

ATGAAGTCAATCTTTGTATTATGCTTGATCTTGAGCTTACTAGTTGTAGGGAAGTCGGAACCAGAGAACGACGTCGGCAGCGGCAGTGGCAGTGGCAACGGCAATGACAACGGCAGCAGCGGTTGCTACATAAGCTGTTTGCTAAATGACTGCAGAAAGGGTGTTTTCCAATGTGCGGTTTGCCTTGGGAAATGTGCAGTAGTAGGGGCCGAATCGTCATACTCATCGAGGAGCAATCGAATGGACAATCATGACTTTTGTAAAATTGGCTGTACCACTTCTCTTTGCACTAAGTTTGCCCTTCCTAACAACCAACACTCAG

Coding sequence (CDS)

ATGAAGTCAATCTTTGTATTATGCTTGATCTTGAGCTTACTAGTTGTAGGGAAGTCGGAACCAGAGAACGACGTCGGCAGCGGCAGTGGCAGTGGCAACGGCAATGACAACGGCAGCAGCGGTTGCTACATAAGCTGTTTGCTAAATGACTGCAGAAAGGGTGTTTTCCAATGTGCGGTTTGCCTTGGGAAATGTGCAGTAGTAGGGGCCGAATCGTCATACTCATCGAGGAGCAATCGAATGGACAATCATGACTTTTGTAAAATTGGCTGTACCACTTCTCTTTGCACTAAGTTTGCCCTTCCTAACAACCAACACTCAG

Protein sequence

MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCRKGVFQCAVCLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHS
Homology
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BLAST of MELO3C023360 vs. NCBI nr
Match: gi|659122241|ref|XP_008461038.1| (PREDICTED: uncharacterized protein LOC103499744 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCRKGVFQCAV 60
           MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCRKGVFQCAV
Sbjct: 1   MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCRKGVFQCAV 60

Query: 61  CLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHS 108
           CLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHS
Sbjct: 61  CLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHS 107

The following BLAST results are available for this feature:
BLAST of MELO3C023360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122241|ref|XP_008461038.1|1.7e-56100.00PREDICTED: uncharacterized protein LOC103499744 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016491 oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU50897melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023360T1MELO3C023360T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU50897MU50897transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023360Cla97C09G164380Watermelon (97103) v2mewmbB222
MELO3C023360Bhi09G000102Wax gourdmewgoB239
MELO3C023360CmaCh17G008200Cucurbita maxima (Rimu)cmameB326
MELO3C023360Cp4.1LG12g07960Cucurbita pepo (Zucchini)cpemeB123
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023360Wax gourdmewgoB209
MELO3C023360Melon (DHL92) v3.5.1memeB084
MELO3C023360Cucumber (Gy14) v1cgymeB579
MELO3C023360Cucurbita maxima (Rimu)cmameB221
MELO3C023360Cucurbita maxima (Rimu)cmameB402
MELO3C023360Cucurbita maxima (Rimu)cmameB827
MELO3C023360Cucurbita moschata (Rifu)cmomeB205
MELO3C023360Cucurbita moschata (Rifu)cmomeB318
MELO3C023360Cucurbita moschata (Rifu)cmomeB393
MELO3C023360Cucurbita moschata (Rifu)cmomeB811
MELO3C023360Wild cucumber (PI 183967)cpimeB525
MELO3C023360Cucumber (Chinese Long) v2cumeB521
MELO3C023360Watermelon (Charleston Gray)mewcgB174
MELO3C023360Watermelon (Charleston Gray)mewcgB220
MELO3C023360Watermelon (97103) v1mewmB198
MELO3C023360Watermelon (97103) v1mewmB229
MELO3C023360Cucurbita pepo (Zucchini)cpemeB501
MELO3C023360Bottle gourd (USVL1VR-Ls)lsimeB185
MELO3C023360Bottle gourd (USVL1VR-Ls)lsimeB430
MELO3C023360Cucumber (Gy14) v2cgybmeB161
MELO3C023360Cucumber (Gy14) v2cgybmeB457
MELO3C023360Silver-seed gourdcarmeB0121
MELO3C023360Silver-seed gourdcarmeB0198
MELO3C023360Silver-seed gourdcarmeB0741
MELO3C023360Silver-seed gourdcarmeB0996
MELO3C023360Cucumber (Chinese Long) v3cucmeB191
MELO3C023360Cucumber (Chinese Long) v3cucmeB537
MELO3C023360Watermelon (97103) v2mewmbB203