Cp4.1LG12g07960 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG12g07960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTo encode a PR protein, Belongs to the plant thionin family with the following members:, putative
LocationCp4.1LG12 : 6661749 .. 6662169 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAGTGAGCATAATTCTTAATTTCCTCAAAATTGGAGTTTTTTATTTTTTTATTTTTTATTTACGTATTTTCTTTGTTTTGAACGTTGCAGATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA

mRNA sequence

ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA

Coding sequence (CDS)

ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA

Protein sequence

MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAICIGKCMISVESSPMQANHMDNRYFCKLGCSTSRCAKLLLNHPNEKQMKGCVNSCSHTCTNIMN
BLAST of Cp4.1LG12g07960 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1

Query: 30  CYFGCINSCVESA-----FQCAI-CIGKCMISVESSPMQANHMD-NRYFCKLGCSTSRCA 89
           CY  C+  C   +      +C   C  +C+       + +N++D + YFCKLGC+T  C 
Sbjct: 28  CYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATYHCV 87

Query: 90  KL-LLNHPNEKQMKGCVNSCSHTCT 107
            L  + +PN +++  CV+SCS+ CT
Sbjct: 88  SLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: M5XBV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-09
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCV---ESAFQCAI-CIGKCMISV 60
           ++  ++ CLVL  +V+G S    +     CY  C   C+    +  +C I C+ KC+++ 
Sbjct: 6   VRCAVLVCLVLG-LVMGQSTAQLF---QLCYGACFGICIVNEHNPLKCGIRCLKKCILTP 65

Query: 61  ESSPMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTN 108
           E  P   +  ++ +FCKLGC+TS C  +   ++PNE+++K CV+SCS TCTN
Sbjct: 66  E--PSDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTN 111

BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.5e-09
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAI-CIGKCMISVESS 60
           +K+V + CLVL  + +G S        P+C+  C  +   + F C++ C+  C+I    S
Sbjct: 4   VKSVFMVCLVLG-LFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDS 63

Query: 61  PMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTN 108
               +  D  YFCKLGC++S C  L   ++P EK++ GCVNSCS TCT+
Sbjct: 64  ---LSLRDTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCTD 108

BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A061G8T8_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027734 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 1

Query: 4   VLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCV----ESAFQCAI-CIGKCMISVES 63
           VL+ CLVL  ++      T +     CY GC  SCV     +AF CAI C+ +C+     
Sbjct: 6   VLMVCLVLGLLMGHSHSDTSF---QICYCGCFVSCVITPGNNAFSCAINCLQECIFR--- 65

Query: 64  SPMQANHM--DNRYFCKLGCSTSRCAKL-LLNHPNEKQMKGCVNSCSHTC 106
                N++  D +YFCKLGCSTS+C  L    +P E  +  CV+SCS TC
Sbjct: 66  -----NYLVEDTQYFCKLGCSTSKCTSLSSKENPAEANVGSCVDSCSDTC 104

BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A059AJ89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03009 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 42/108 (38.89%), Postives = 53/108 (49.07%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAICIGKCMISVESSP 60
           +K+VLV CLVL     G+           CY GC  +CV +      C  KC+      P
Sbjct: 4   VKSVLVVCLVL-----GLFLGQSRADFQDCYVGCFVACVVTGDNVVKCSLKCLKDCIGLP 63

Query: 61  MQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTN 108
                 D  YFCKLGC++S C  L   + P EK++  CVNSCS TC N
Sbjct: 64  SHGL-TDAEYFCKLGCASSLCINLSSKDDPGEKRVAHCVNSCSKTCAN 105

BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1

Query: 3   TVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCV----ESAFQCAI-CIGKCMISVE 62
           +V++ CLVL  +V   +   +      CY GC   CV       F CAI C+ +C+I   
Sbjct: 47  SVMMVCLVLGLLVGQSTASFQ-----KCYAGCFLLCVFIPPNPVFSCAIKCLNECIIP-- 106

Query: 63  SSPMQANHMDNRYFCKLGCSTSRCAKL-LLNHPNEKQMKGCVNSCSHTC 106
           SS +++   D +YFCKLGC+TS C  L    +P E+++  CV+SCS TC
Sbjct: 107 SSTLESGK-DTQYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETC 147

BLAST of Cp4.1LG12g07960 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.)

HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1

Query: 30  CYFGCINSCVESA-----FQCAI-CIGKCMISVESSPMQANHMD-NRYFCKLGCSTSRCA 89
           CY  C+  C   +      +C   C  +C+       + +N++D + YFCKLGC+T  C 
Sbjct: 28  CYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATYHCV 87

Query: 90  KL-LLNHPNEKQMKGCVNSCSHTCT 107
            L  + +PN +++  CV+SCS+ CT
Sbjct: 88  SLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|659122241|ref|XP_008461038.1| (PREDICTED: uncharacterized protein LOC103499744 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPS------------CYFGCI-NSCVESAFQCAI 60
           MK++ V CL+LS +VVG SEP   VG  S            CY  C+ N C +  FQCA+
Sbjct: 1   MKSIFVLCLILSLLVVGKSEPENDVGSGSGSGNGNDNGSSGCYISCLLNDCRKGVFQCAV 60

Query: 61  CIGKC-MISVESS-PMQANHMDNRYFCKLGCSTSRCAKLLL---NHPNEKQMKGCVNSCS 110
           C+GKC ++  ESS   ++N MDN  FCK+GC+TS C K  L    H +EK++KGCV+SCS
Sbjct: 61  CLGKCAVVGAESSYSSRSNRMDNHDFCKIGCTTSLCTKFALPNNQHSDEKEVKGCVSSCS 120

BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCV--ESAFQCAICIGKCM---IS 60
           M++V++ C +LS V     + T  +    CY  C+  C    S     +C  KC    I+
Sbjct: 1   MRSVVLICFILSLVA---GKSTAVIEVSKCYLNCMAVCAVPSSLLTVGLCALKCTADCIA 60

Query: 61  VESSPMQANHMDNRYFCKLGCSTSRCAKLLLNHP-NEKQMKGCVNSCSHTC 106
           + SSPM  N +D RYFCKLGC+TS C K        EK+++ CVN+C   C
Sbjct: 61  IASSPMNLNRVDTRYFCKLGCATSCCTKSSTKKDFAEKKVESCVNTCDQIC 108

BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|645244799|ref|XP_008228584.1| (PREDICTED: thionin-like protein 2 [Prunus mume])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 6   VACLVLSFVVVG-ISEPTEYVGGPSCYFGCINSCVES------AFQCAICIGKCMISVES 65
           V CLV+ ++V+G +   +  +  P CY  C++ C +S      A    ICI +C  + +S
Sbjct: 5   VMCLVMGYLVLGFLVAQSSAIENPGCYGNCVDKCKKSKGLFGLAACGVICIAEC--AFDS 64

Query: 66  SPMQANHMDNRYFCKLGCSTSRCAKLL-LNHPNEKQMKGCVNSCSHTC 106
             + +   +N YFCKLGC++S CA LL   +P+ +++ GCV+SCS  C
Sbjct: 65  PSLHSVPKNNHYFCKLGCASSLCASLLDQENPDVEKVGGCVDSCSDRC 110

BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|595974788|ref|XP_007217789.1| (hypothetical protein PRUPE_ppa019184mg [Prunus persica])

HSP 1 Score: 68.6 bits (166), Expect = 8.0e-09
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCV---ESAFQCAI-CIGKCMISV 60
           ++  ++ CLVL  +V+G S    +     CY  C   C+    +  +C I C+ KC+++ 
Sbjct: 6   VRCAVLVCLVLG-LVMGQSTAQLF---QLCYGACFGICIVNEHNPLKCGIRCLKKCILTP 65

Query: 61  ESSPMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTN 108
           E  P   +  ++ +FCKLGC+TS C  +   ++PNE+++K CV+SCS TCTN
Sbjct: 66  E--PSDGHQTNSLHFCKLGCATSLCTNISTKDNPNEEKVKNCVDSCSGTCTN 111

BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1

Query: 1   MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAI-CIGKCMISVESS 60
           +K+V + CLVL  + +G S        P+C+  C  +   + F C++ C+  C+I    S
Sbjct: 4   VKSVFMVCLVLG-LFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIPPSDS 63

Query: 61  PMQANHMDNRYFCKLGCSTSRCAKLLL-NHPNEKQMKGCVNSCSHTCTN 108
               +  D  YFCKLGC++S C  L   ++P EK++ GCVNSCS TCT+
Sbjct: 64  ---LSLRDTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCTD 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
THNL2_ARATH1.7e-0632.94Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
M5XBV6_PRUPE5.6e-0935.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1[more]
A0A059AI82_EUCGR9.5e-0937.61Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1[more]
A0A061G8T8_THECC1.2e-0840.00To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
A0A059AJ89_EUCGR1.6e-0838.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03009 PE=4 SV=1[more]
A0A061GI20_THECC3.6e-0838.53To encode a PR protein, Belongs to the plant thionin family with the following m... [more]
Match NameE-valueIdentityDescription
AT1G12663.19.4e-0832.94 Predicted to encode a PR (pathogenesis-related) protein. Belongs to... [more]
Match NameE-valueIdentityDescription
gi|659122241|ref|XP_008461038.1|5.3e-2146.46PREDICTED: uncharacterized protein LOC103499744 [Cucumis melo][more]
gi|449470525|ref|XP_004152967.1|2.5e-1036.94PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|645244799|ref|XP_008228584.1|2.1e-0936.11PREDICTED: thionin-like protein 2 [Prunus mume][more]
gi|595974788|ref|XP_007217789.1|8.0e-0935.71hypothetical protein PRUPE_ppa019184mg [Prunus persica][more]
gi|702484105|ref|XP_010033893.1|1.4e-0837.61PREDICTED: thionin-like protein 2 [Eucalyptus grandis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g07960.1Cp4.1LG12g07960.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g07960MELO3C023360Melon (DHL92) v3.5.1cpemeB123
Cp4.1LG12g07960MELO3C023360.2Melon (DHL92) v3.6.1cpemedB150
The following gene(s) are paralogous to this gene:

None