Cp4.1LG12g07960 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAGTGAGCATAATTCTTAATTTCCTCAAAATTGGAGTTTTTTATTTTTTTATTTTTTATTTACGTATTTTCTTTGTTTTGAACGTTGCAGATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA ATGAAGACAGTTCTGGTAGCTTGCTTGGTTCTAAGCTTTGTGGTCGTAGGGATCTCCGAACCCACAGAGTATGTCGGCGGCCCCAGTTGCTACTTCGGCTGCATTAATAGCTGCGTAGAGAGTGCCTTCCAGTGCGCTATTTGCATTGGAAAGTGCATGATAAGCGTCGAGTCCTCCCCGATGCAGGCCAACCATATGGACAATCGTTACTTCTGCAAGCTTGGGTGTTCCACTTCTCGCTGCGCCAAGCTCCTCCTTAACCATCCAAATGAGAAGCAAATGAAAGGCTGTGTCAACTCGTGCTCGCATACATGCACGAACATTATGAACTAA MKTVLVACLVLSFVVVGISEPTEYVGGPSCYFGCINSCVESAFQCAICIGKCMISVESSPMQANHMDNRYFCKLGCSTSRCAKLLLNHPNEKQMKGCVNSCSHTCTNIMN
BLAST of Cp4.1LG12g07960 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06 Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: M5XBV6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019184mg PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 5.6e-09 Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 9.5e-09 Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A061G8T8_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027734 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08 Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A059AJ89_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03009 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08 Identity = 42/108 (38.89%), Postives = 53/108 (49.07%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08 Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. TAIR10
Match: AT1G12663.1 (AT1G12663.1 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.) HSP 1 Score: 53.5 bits (127), Expect = 9.4e-08 Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|659122241|ref|XP_008461038.1| (PREDICTED: uncharacterized protein LOC103499744 [Cucumis melo]) HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21 Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|449470525|ref|XP_004152967.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus]) HSP 1 Score: 73.6 bits (179), Expect = 2.5e-10 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|645244799|ref|XP_008228584.1| (PREDICTED: thionin-like protein 2 [Prunus mume]) HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09 Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|595974788|ref|XP_007217789.1| (hypothetical protein PRUPE_ppa019184mg [Prunus persica]) HSP 1 Score: 68.6 bits (166), Expect = 8.0e-09 Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
BLAST of Cp4.1LG12g07960 vs. NCBI nr
Match: gi|702484105|ref|XP_010033893.1| (PREDICTED: thionin-like protein 2 [Eucalyptus grandis]) HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08 Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |