MELO3C023261.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023261.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionmRNA turnover protein 4 like
Locationchr11 : 584948 .. 586600 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTTGTGGAACACATGACATTTATCGAGTATTCTTTTTAATAAATCTGATTTTTTTTTACTTTGGTCTTTTCATGACCTTAATATTGTTCTTGTATTTTGAATATGATGAGGGTGCTATGGGGTGTCAACCTAGTTGAGATGTCCGAGTGCTCCTACTGATCCTCTCTCTCTCTCTTTTTCCCATTTCTAGGCCTCTCTATTATTCTCGATGTATAACTGTCTTGTACTTTGAGTTTATTAATAATAGAGAAGTTTGTCTCCTTTTCAAAAAACAAAAAAAAACTGATTTTTTTAAGGTGTTGATTCAACAAAAAGGTCCAGTATGATTTTATATAATCTGTGTTATAATATGCATGTACTTGGTGGTTGGATGCTTTATTGAAGTTTAATGCTATTAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTCCGTAAATATACACTTCGTGCCTGCAAGCATTACTTATTTTAAAAAGTTGGTTATAAAGCAGAATTCTTTGTGGAACAGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGGTTTGTATCTCTTTGCGACTTGCTCTTTTCTTAAATCTATGTTGACTTTGACATGTGAATGAGGCTCTGTAAGGTTGTTCCAGCAGTGGCGTTTTTCACTTCCAACTCCCATCTCAAATTAAGTGTGGTTTGAAGATGTTTTTGGAATAAGTTCTTTGAGGGAAACAATTTCTATGCACACTTTTTTAATTATAGGCTCTTTTATGTTGCCATTGAGAGAACTGAGCGTCTATAAAAAAAGAACAGGTGGTTCTTTTTTTGGCATCGAACAAATTGTCAGGTTCCTTCGGTTTTTGTTCTCTAAGTTTGATTTTTTTATCTAGCAATTTGAAGTTTCGAAGAGAGAACTTCTATTTGGTTCTTCTTTACTGTTTACAACCTTACTTGAGTTATGCATTTGTATAAGTTCTAAAATTTGTAGGCGAGAGCTATATCAATTGACAGTTGGAATTTGAGGCTAAGAGAGAGATTGTACTTTGGCATCGATGTTCGCATGACGATTAAGATGTTTGATTTGATTTGATTTGGTTGCAGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCAACGCAAAGGAATCCAAATTATGATAATATATATGAATGCAATGCCAATGCAATGAATGGCTGTCCCTAGGATTCATTGCCATAATATATATATATGATTAGGATTCCTTCCTCTTTTTGATTTTGGTTTGTTTTTACAAGTTTTTGTAGAAATTACAAGTGCACCCCAGTCACTTAATGTGTTGTTTAGTTCAACAACTCACAAAGAAATTCTCAATTTTGTTGTGTTTAGTGAGATGGACAATTGGGTATTGTGATTTGGTAGATTTTTTCAATAGTAATATTAAT

mRNA sequence

GTTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCAACGCAAAGGAATCCAAATTATGATAATATATATGAATGCAATGCCAATGCAATGAATGGCTGTCCCTAGGATTCATTGCCATAATATATATATATGATTAGGATTCCTTCCTCTTTTTGATTTTGGTTTGTTTTTACAAGTTTTTGTAGAAATTACAAGTGCACCCCAGTCACTTAATGTGTTGTTTAGTTCAACAACTCACAAAGAAATTCTCAATTTTGTTGTGTTTAGTGAGATGGACAATTGGGTATTGTGATTTGGTAGATTTTTTCAATAGTAATATTAAT

Coding sequence (CDS)

TTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAA

Protein sequence

LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Homology
[Close]
BLAST of MELO3C023261.2 vs. NCBI nr
Match: XP_008460905.2 (PREDICTED: mRNA turnover protein 4 homolog [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 6.5e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV
Sbjct: 13  LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 72

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 73  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 126

[Close]
BLAST of MELO3C023261.2 vs. NCBI nr
Match: KGN62139.1 (hypothetical protein Csa_2G302060 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 2.1e-56
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYEDYDYARTGSAASEKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFV
Sbjct: 94  LFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 153

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALGLR AIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 154 VCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]
BLAST of MELO3C023261.2 vs. NCBI nr
Match: XP_011649395.1 (PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 2.1e-56
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYEDYDYARTGSAASEKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFV
Sbjct: 116 LFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALGLR AIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 176 VCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

[Close]
BLAST of MELO3C023261.2 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEY DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF 
Sbjct: 116 LFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFT 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALG+RMA FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 176 VCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]
BLAST of MELO3C023261.2 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEY DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF 
Sbjct: 116 LFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFT 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALG+RMA FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 176 VCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]
BLAST of MELO3C023261.2 vs. TAIR10
Match: AT1G25260.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 163.7 bits (413), Expect = 6.7e-41
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFN YED D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DFV
Sbjct: 116 LFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFV 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELY 103
           VCEEGK LSP+SA ILR L ++MA F+LNL+CRWSP DFELY
Sbjct: 176 VCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELY 217

[Close]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match: sp|A4FV84|MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-21
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 2   FNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVV 61
           F +Y + DYAR G+ A+  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ V
Sbjct: 116 FTKYTEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEV 175

Query: 62  CEEGKSLSPESAGILRALGLRMAIFRLNLVCRW 95
           C+EG  L+PE A +L+  G  MA F++++   W
Sbjct: 176 CKEGDVLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match: sp|Q9UKD2|MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 4.3e-21
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 0 

Query: 2   FNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVV 61
           F +Y + DYAR G+ A+  V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ V
Sbjct: 116 FTKYTEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEV 175

Query: 62  CEEGKSLSPESAGILRALGLRMAIFRLNLVCRW--SPGDFELYIDGPENSDVES 114
           C+EG  L+PE A +L+  G  MA F++ +   W    G F+   D    S  ES
Sbjct: 176 CKEGDVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229

[Close]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match: sp|Q9D0I8|MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.1e-20
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 2   FNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVV 61
           F +Y + D+AR G+ A+  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ V
Sbjct: 116 FTKYTEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEV 175

Query: 62  CEEGKSLSPESAGILRALGLRMAIFRLNLVCRW 95
           C+EG  L+PE A IL+  G  MA F++ +   W
Sbjct: 176 CKEGDVLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match: sp|Q7S302|MRT4_NEUCR (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 3   NEYEDY-------DYARTGSAASEKVELKEGPLEQ------------FSHEMEPSLRKLG 62
           +E +DY       D+AR GS A+  + +  GPL               SH +EP LR+LG
Sbjct: 110 SEIKDYFVNLTQVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLG 169

Query: 63  LPVRLNKGVVEL------VSDFVVCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPG 102
           +P R+ KG V L        D+V+C+EG++L      +L+   + ++ FR+ L+  WS  
Sbjct: 170 MPTRMVKGKVCLGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAA 229

[Close]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match: sp|Q9USZ6|MRT4_SCHPO (Ribosome assembly factor mrt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-08
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 2   FNEYEDYDYARTGSAASEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLN 61
           F  +   D+AR G+ A     +  GP+               +H +EP +R+LG+P  L 
Sbjct: 116 FESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLK 175

Query: 62  KGVVELVSDFVVCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWS 96
            GVV L++DF +C EG+ L      +L+  G+  A F++ L+  +S
Sbjct: 176 NGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYS 221

[Close]
BLAST of MELO3C023261.2 vs. TrEMBL
Match: tr|A0A1S3CDZ0|A0A1S3CDZ0_CUCME (mRNA turnover protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103499647 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV
Sbjct: 13  LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 72

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 73  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 126

[Close]
BLAST of MELO3C023261.2 vs. TrEMBL
Match: tr|A0A0A0LM77|A0A0A0LM77_CUCSA (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYEDYDYARTGSAASEKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFV
Sbjct: 94  LFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 153

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGKSLSPESAGILRALGLR AIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 154 VCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]
BLAST of MELO3C023261.2 vs. TrEMBL
Match: tr|A0A2P4JRK2|A0A2P4JRK2_QUESU (Ribosome assembly factor mrt4 OS=Quercus suber OX=58331 GN=CFP56_49813 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.9e-46
Identity = 92/114 (80.70%), Postives = 104/114 (91.23%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYE+YD+ARTGS A+EKVELKEGPLEQF+HEMEP LRK G+PVRLNKGVVEL+SDFV
Sbjct: 116 LFNEYEEYDFARTGSTATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELLSDFV 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGK LSPESA ILR LG +MA FRL+L+CRWSP +FELYI+ PE+SDVESA
Sbjct: 176 VCEEGKPLSPESARILRLLGTQMATFRLHLICRWSPEEFELYIERPEDSDVESA 229

[Close]
BLAST of MELO3C023261.2 vs. TrEMBL
Match: tr|A0A2N9IEA6|A0A2N9IEA6_FAGSY (Ribosome assembly factor mrt4 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50984 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.8e-46
Identity = 92/114 (80.70%), Postives = 104/114 (91.23%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYE+YD+ARTGS A+EKVELKEGPLEQF+HEMEP LRK G+PVRLNK VVEL+SDFV
Sbjct: 116 LFNEYEEYDFARTGSTATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKAVVELLSDFV 175

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGK LSPESA ILR LG++MA FRL+L+CRWSP DFELYI+ PE+SDVESA
Sbjct: 176 VCEEGKPLSPESARILRLLGIQMAKFRLHLICRWSPEDFELYIERPEDSDVESA 229

[Close]
BLAST of MELO3C023261.2 vs. TrEMBL
Match: tr|B9SRK3|B9SRK3_RICCO (Ribosome assembly factor mrt4 OS=Ricinus communis OX=3988 GN=RCOM_1412310 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 8.4e-46
Identity = 91/114 (79.82%), Postives = 103/114 (90.35%), Query Frame = 0 

Query: 1   LFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFV 60
           LFNEYE+YD+ARTGS A+EKVELKEGPLEQF+HEMEP LRK G+PVRLNKGVVELVSDFV
Sbjct: 69  LFNEYEEYDFARTGSIATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFV 128

Query: 61  VCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 115
           VCEEGK LSPESA ILR LG++MA FRL+L+CRWSP DFELY +G + SDV+SA
Sbjct: 129 VCEEGKHLSPESARILRLLGIKMATFRLHLICRWSPEDFELYREGQDESDVDSA 182

The following BLAST results are available for this feature:
BLAST of MELO3C023261.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460905.26.5e-58100.00PREDICTED: mRNA turnover protein 4 homolog [Cucumis melo][more]
KGN62139.12.1e-5698.25hypothetical protein Csa_2G302060 [Cucumis sativus][more]
XP_011649395.12.1e-5698.25PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus][more]
XP_022933518.11.3e-5391.23mRNA turnover protein 4 homolog [Cucurbita moschata][more]
XP_023529350.11.3e-5391.23mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C023261.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G25260.16.7e-4176.47Ribosomal protein L10 family protein[more]
BLAST of MELO3C023261.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A4FV84|MRT4_BOVIN4.3e-2151.61mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1[more]
sp|Q9UKD2|MRT4_HUMAN4.3e-2146.49mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2[more]
sp|Q9D0I8|MRT4_MOUSE8.1e-2050.54mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1[more]
sp|Q7S302|MRT4_NEUCR2.6e-1031.45Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-... [more]
sp|Q9USZ6|MRT4_SCHPO1.9e-0830.19Ribosome assembly factor mrt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of MELO3C023261.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CDZ0|A0A1S3CDZ0_CUCME4.3e-58100.00mRNA turnover protein 4 homolog OS=Cucumis melo OX=3656 GN=LOC103499647 PE=4 SV=... [more]
tr|A0A0A0LM77|A0A0A0LM77_CUCSA1.4e-5698.25Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV... [more]
tr|A0A2P4JRK2|A0A2P4JRK2_QUESU2.9e-4680.70Ribosome assembly factor mrt4 OS=Quercus suber OX=58331 GN=CFP56_49813 PE=3 SV=1[more]
tr|A0A2N9IEA6|A0A2N9IEA6_FAGSY3.8e-4680.70Ribosome assembly factor mrt4 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50984 PE=3... [more]
tr|B9SRK3|B9SRK3_RICCO8.4e-4679.82Ribosome assembly factor mrt4 OS=Ricinus communis OX=3988 GN=RCOM_1412310 PE=3 S... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0044424 intracellular part
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023261.2.1MELO3C023261.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.90.105.20coord: 10..83
e-value: 9.6E-26
score: 91.5
NoneNo IPR availablePANTHERPTHR21141:SF37MRNA TURNOVER PROTEIN 4 HOMOLOGcoord: 2..99
NoneNo IPR availablePANTHERPTHR2114160S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBERcoord: 2..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023261.2Csa2G302060Cucumber (Chinese Long) v2cumedB092
MELO3C023261.2CSPI02G15560Wild cucumber (PI 183967)cpimedB092
MELO3C023261.2Cucsa.250020Cucumber (Gy14) v1cgymedB418
MELO3C023261.2CsGy2G015540Cucumber (Gy14) v2cgybmedB081
MELO3C023261.2Cla007795Watermelon (97103) v1medwmB118
MELO3C023261.2ClCG02G000650Watermelon (Charleston Gray)medwcgB089
MELO3C023261.2Cla97C02G026920Watermelon (97103) v2medwmbB088
MELO3C023261.2CsaV3_2G018120Cucumber (Chinese Long) v3cucmedB097
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023261.2Wax gourdmedwgoB120
MELO3C023261.2Cucurbita maxima (Rimu)cmamedB572
MELO3C023261.2Cucurbita maxima (Rimu)cmamedB629
MELO3C023261.2Cucurbita moschata (Rifu)cmomedB562
MELO3C023261.2Cucurbita moschata (Rifu)cmomedB618
MELO3C023261.2Cucurbita pepo (Zucchini)cpemedB305
MELO3C023261.2Cucurbita pepo (Zucchini)cpemedB312
MELO3C023261.2Cucurbita pepo (Zucchini)cpemedB787
MELO3C023261.2Bottle gourd (USVL1VR-Ls)lsimedB058
MELO3C023261.2Watermelon (97103) v1medwmB128
MELO3C023261.2Silver-seed gourdcarmedB0726
MELO3C023261.2Silver-seed gourdcarmedB1039