CsaV3_2G018120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G018120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Ribosome assembly factor mrt4
Location	chr2 : 15111094 .. 15115559 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATAAAAAAAAAAGAAAAGAAAAAAGAGAAAAGGTAAACCCTAGAGTGAAACACCACTTTTTCTCCGTTTGTTCCATCGCTTGCCGCCAACTCTTCAACCATATTTGATTTCTTTCTTCTTTCTTCTCCCTCTCCATCGCCTCCATTATCGGTCCCCGGTTCACCTCTATACTCAATTTTCTTTCTCCTCCTCTTATCTTCCTCTCTACTGTTGCAAAACTCCATCTCAACGTCTGTATCAACTGTCAAGGTTTTTTTTAGCAGCAATACAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTACGTTTTAATTCCTCTTGGACTTTTCTGTGCATCGTTTCCTGCTGCAAGAAGTTGAATCTGTTTAGTTATTTTGTGTTTGTTGTATCTTACTTGTTTTCGACACTTAGAGAAGTAGATTTTAGCTCATCTGGTTAAAGGAGAGATTGGTTTGATATGTTAGGGGAAGTTGTAGTTGAAAGATGGGTTTTGTGTGTGTGTGTGTGTGTGTTTGCTATATCATGAGGGGAAGTTCATTCTGAAGTGCTTAGTTCACTAGGTTGGCTGCAAATGCACCGGCATTTGTGGTGTTACATTATGTAATAGGACCTGAATGTGAAAATATATGAATATCCTTAGTATGCACACAACTAAGTATATCTTTTTGATTGCTATTTTCATGAGACACCTCTGATGAAATTTGTTTCTTATTAAAAATAGGTAACTTTTTTTCCTTCATTTTACTCTGTGGCAATGGTAAGTAATGGGTGTTTCTAGTTTCTAAGTTTCTGACAAATTTTTTAACACCAAAGAAGATATTTGGTATTTCTTAGACTAGGTATTGTTTAGGCTTGGGATGGTCTTGATATCTTATCATCACTTATGGAGAAATTTTCCACTAGTTGCTTCGTTCTCACAAGGTTACCATAGTTGGTATTTTTTCATGTTTATAGGAACTTTCCTTGTAATTCAGATTTACAAACTAGTTTTTCTCTTTCTTGCTTAAGCGTTGTATTGTTCATCTAAGGCTTTTCAAAGTTCTATTGACTATATTTGATGTGTTTCTTGTGTAAATACTTTAAGAGTGAGGAGTTTGTAGAGGCATCCTGAGAAGGAGTAGCAGTAGGTCATTTGCTAACCTCTTCTTGAACTAATACTTATTACAAATATGATGTTTTGTGAGCAACTAGCGTCAAGCTTGCTTCCCTTGACGGTACGAGAGGCTTTAGTAGTGTGCACTAGAAGATAGTTTTTGTTGTCGAATATGAGGGAAAAATAATTTTACTTTTTAGTATAGGTGTTGCCAGGAGGTGGGTGAGTTGAAAGTTTCTGTCTATGTGCTAAATATAGAGTTGCTTACAACATACGGAACGTGCCTTAAGCTACAGTGTTTGTTACCGGTGATTAATTTCTAAAAAAATATACTTAGTAGGCTGCTTAATGTTGTTAAACAGAAACCAAATAGCAGTAAACCTAGGAGAACTTAATGACTTGCTTTAACTGTAGGAAGATGCTAAAATTTTGTTCTTTTAATTCAAGGTTCTTATTGAATATGGGTTAAAGGATTTGTTATATTATGGGTTAATTTGTATGAGGCAGTTTCTTGTGAAAAGTACGAGGCAGTTGAAGAAGTTGAATGACTTGCGTTGGTAGTAATCAGTGTCAAACTCATGTGGTTTTTAACTTAAAAAGAAAGACGAAAAATATGAACTTAGTCCGATGCAGAATAGTGTTTTGAGTCTTCTATCTAATTGTTCGTGGGATAAATGCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGGCAAGTTCTACTACCTGACTTCTGTATTATTAATTTGCTTCATCATTTCAAATATTGATTAGATACAAATGTACTTCCTCTATGTTGTTTGGTTAGCGAAGATAGCACGACAAAAGATATGAATAATAAATAGCACATTTTAAAACTCAAAAGATAAAATCATAATGAATAGCATTCCTTAGGAGAAATGATGAGAACGTGCTGTTTCCATAACCACTGAAAATAACAATTTTAGCACGTTATGGTAACAGCAAGTAAGGCAACCTTTCTCTCCTTGCTTTAAAAAGCTTCACATAAAAAGGGGGTTACAACCTTTGGCTGCTGGCTTGTGTACCTGTGTCTTAACATGTCCTCTATTCTTTTTCTTCTTGAAGGCATCAATGATTTGGAAATTATATTACTTGACTTTGAAACATATTTTAGCTATACATTATTGTCTCATGCTTCTGATGCTCGTTCACATTTTTAAAGTGTATAAATGTTTAATGAGGCTAAATGGTTGAAAATGAGGATATTCTGTTTGTGAACTCATTTATTGCAATTTTTGAACTTCTGCTGATGGCATTTTGAGATGTCATGCATGGTCTCTCTTATTTTTTTCTAATGAATTGATGTAACCTGACCTGACCAGACCGAGTAGTTTTAATTGGGTTTCCAAATTGAATTTTTTTCCCCCAATGATAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAAGGTTTCTAAGGTGAATCTTCTTTTCCAAATTGCATATACTTTAAGTGTTCTTTTTCTGTAGTTTTTAGGAAGTAACATTCACTCTTCTATTTTCAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTAAGTGAGCATGCAGTGTTTTAAACTTGACAAGCTCTGGCAAAAAGTAGTAATTTTGACAAGTTGCTATTTCATTTTTAATTTAAATACCATGGTATTTAAATTTAATGAATTATGCATTCTTTTTTTTGTTTAGCGGTTGAAGGATCAGATAAATTGTGCTCAATAAATTTCCATATCTATGAATACAAAAGTCCGAAATTTTCATTTGAGAAAGACAGCTTAAAAATGAGATTTTTGGCCCAAAAAAAAAAAATCCCAACTTTGTCTCACATGGTTAGCATTTCAATTCTGTGGGAAGGGACTTCTAGAATAAATTGCTTAAAAGAAAATGCTCGTATATTTGTTATGTTTTACAATAATGCTTGATTTAATTTTTAATGTTTTGTTATACAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTTTGTGCCCCTTTGAACACGACATTTATCGAGTTTTCTTTTTAATAAATCTGATTGCACTTTTTTTGAATGTGGTGATTCAACAAAAAGGTCCGGTATGGTTTTATATAATCTGTGTTATAATTTGCATGTACTTGGTGGTTGGATGCTTTATTGAAGTTTAATGCTATTAGGTTGAGCTTAAGGAAGGTCCACTGGGGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGAGTAAATACACACTTTGTGCTTGCAAGCATTACTTACTTTTTAAAAGTTGGTTACAAAGCAGAAATCTTTGTGGAACAGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGGTTTGTATCTTTTGTCGGCATTGAACAAATTGTCAGGTTCCTTTGGTTTTTGTTCTCTAAGTTTGATTTTTCTTTCATGTAGCAATTTGAAGTTTCATAGAGTGAACTTTTATCTTTTTCTTCTTTACCGTTTACAACCTTACTTGAGTTGTACATTTGTTTGAGTTATATGAACTGACAGTTGGAATTTGAGGCTAAGAGAGAGACATATACTTTGGCATTGACGATTAAGATGTTTGATTTGATTTGGTTGCAGCGAGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCCAACACATAGGAATCCAAATTATGATAATATATATATGAATGCAATGCCAATGCAATGAATGGGTGCCCCTAGGATTCATTGCCATGATATATATATATATATGTGTGTGTGATTGGGATTCCTTCCTTTTTTTTTTTTTTTCTTTTTTCTTTTTTGATTTTGGTTTGTTTTTACAAGTTGTTGAGTGCACCCGGTCATTTATTCACTTAGTGTGTTCTTTAGTTCAACAACTCACAAAGAAATCCTCAATTTTGTTGTGTTAAGTGAGATGGACAATTGGGTATTATGATTTGGTAGATTTCTTCAATAGTATTATTAATCCTCACTCAATCTGCTTTCTTTT

mRNA sequence

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAAGGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCACTGGGGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGAGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAA

Coding sequence (CDS)

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAAGGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCACTGGGGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGAGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAA

Protein sequence

MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA

Homology

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BLAST of CsaV3_2G018120 vs. NCBI nr
Match: XP_011649395.1 (PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus])

HSP 1 Score: 455.7 bits (1171), Expect = 9.5e-125
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

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BLAST of CsaV3_2G018120 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 425.2 bits (1092), Expect = 1.4e-115
Identity = 209/229 (91.27%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSRLFFGANKVMQ+SLGR+ SDEIRPGLHK+SKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           EDYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EDYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K+LSPESAGILRALG+R A FRLNLVCRWSPGDF+LYI+G +NSDVESA
Sbjct: 181 KALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

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BLAST of CsaV3_2G018120 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata])

HSP 1 Score: 421.8 bits (1083), Expect = 1.5e-114
Identity = 207/229 (90.39%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ SDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

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BLAST of CsaV3_2G018120 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 420.2 bits (1079), Expect = 4.4e-114
Identity = 206/229 (89.96%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ S+EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

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BLAST of CsaV3_2G018120 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 418.7 bits (1075), Expect = 1.3e-113
Identity = 206/229 (89.96%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ SDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+ SD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

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BLAST of CsaV3_2G018120 vs. TAIR10
Match: AT1G25260.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 312.0 bits (798), Expect = 3.1e-85
Identity = 152/217 (70.05%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HK+ +V  IR+AVE Y+SV+VF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           +   + F G+NKVMQ++LGRS  DE+R G++KVSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           ED D++RTGS A E VELKEGPL QF+HEMEP LRKL +PVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELY 218
           K LSP+SA ILR L ++ A F+LNL+CRWSP DFELY
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELY 217

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BLAST of CsaV3_2G018120 vs. TAIR10
Match: AT3G11250.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 32  QAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLH 91
           Q ++ Y  + V   +N+ + + + +R+ L+  S +  G N +M+ S+     +     + 
Sbjct: 19  QLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAIL 78

Query: 92  KVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEME 151
            +  LL GN GL FT    +EV     +Y+    AR G  A   V ++ G  G     ++
Sbjct: 79  NLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTG-----LD 138

Query: 152 PS----LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 198
           PS     + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 139 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

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BLAST of CsaV3_2G018120 vs. TAIR10
Match: AT3G09200.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 0


Query: 32  QAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLH 91
           Q ++ Y  + V   +N+ + + + +R+ L+  S +  G N +M+ S+     +     + 
Sbjct: 19  QLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAIL 78

Query: 92  KVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLGQFSHEME 151
            +  LL GN GL FT    +EV     +Y+    AR G  A   V ++ G  G     ++
Sbjct: 79  NLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTG-----LD 138

Query: 152 PS----LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 198
           PS     + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 139 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

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BLAST of CsaV3_2G018120 vs. Swiss-Prot
Match: sp|A4FV84|MRT4_BOVIN (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 108/209 (51.67%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH+VSK L G  GL FTN  KEEV+  F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + DYAR G+ A+  V L  GPL QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG
Sbjct: 121 TEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW 210
             L+PE A +L+  G   A F++++   W
Sbjct: 181 DVLTPEQARVLKLFGYEMAEFKVSIKYMW 208

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BLAST of CsaV3_2G018120 vs. Swiss-Prot
Match: sp|Q9UKD2|MRT4_HUMAN (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 113/230 (49.13%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH+VSK L G  GL FTN  KEEV   F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + DYAR G+ A+  V L  GPL QF H MEP LR+LGLP  L +GVV L+SD+ VC+EG
Sbjct: 121 TEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW--SPGDFELYIDGPENSDVES 229
             L+PE A +L+  G   A F++ +   W    G F+   D    S  ES
Sbjct: 181 DVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229

[Close]

BLAST of CsaV3_2G018120 vs. Swiss-Prot
Match: sp|Q9D0I8|MRT4_MOUSE (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.7e-53
Identity = 108/209 (51.67%), Postives = 143/209 (68.42%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH+VSK L G  GL FTN  KEEV   F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + D+AR G+ A+  V L  GPL QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG
Sbjct: 121 TEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW 210
             L+PE A IL+  G   A F++ +   W
Sbjct: 181 DVLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of CsaV3_2G018120 vs. Swiss-Prot
Match: sp|Q86HD3|MRT4_DICDI (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.8e-41
Identity = 83/216 (38.43%), Postives = 132/216 (61.11%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           M KSKR+  V ++K  K   + KK +V  I+  V+ Y  +++FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
            STS+  FG NKV+ + LG+S+ DE++P LHK+++ L G  GL FTN PK++V   F  Y
Sbjct: 61  -STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++ +CE G
Sbjct: 121 SEKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFEL 217
            +++PE + +L+      + F+ ++   W+  +F L
Sbjct: 181 VAVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of CsaV3_2G018120 vs. Swiss-Prot
Match: sp|Q7S302|MRT4_NEUCR (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-34
Identity = 85/234 (36.32%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKR +   L++  KK R+ K+ + E IR+ + NY   FVF+++NMRN   K++R++L
Sbjct: 1   MPKSKRAKVYNLTQVTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKEL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
            +  R+FFG  K+   +LG +  D    GL K+SK L G+ GL FTN    E++  F   
Sbjct: 61  -NDCRIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNL 120

Query: 121 EDYDYARTGSAASEKVELKEGPL----GQ--------FSHEMEPSLRKLGLPVRLNKGVV 180
              D+AR GS A+  + +  GPL    G+         SH +EP LR+LG+P R+ KG V
Sbjct: 121 TQVDFARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKV 180

Query: 181 EL------VSDFVVCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFEL 217
            L        D+V+C+EG++L      +L+   +  + FR+ L+  WS    E+
Sbjct: 181 CLGDEAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of CsaV3_2G018120 vs. TrEMBL
Match: tr|A0A0A0LM77|A0A0A0LM77_CUCSA (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 6.5e-106
Identity = 200/207 (96.62%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 26  MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSR---LFFGANKVMQISLGRSD 85
           MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSR   L   +NKVMQISLGRSD
Sbjct: 1   MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDFSNKVMQISLGRSD 60

Query: 86  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 145
           SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP
Sbjct: 61  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 120

Query: 146 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 205
           LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR
Sbjct: 121 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 180

Query: 206 LNLVCRWSPGDFELYIDGPENSDVESA 230
           LNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 181 LNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of CsaV3_2G018120 vs. TrEMBL
Match: tr|A0A2P6PDT8|A0A2P6PDT8_ROSCH (Ribosome assembly factor mrt4 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0224251 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 4.5e-99
Identity = 178/229 (77.73%), Postives = 208/229 (90.83%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTK+KGR+HK+++V  I+QA E+YNSV+VF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKRKGREHKEAVVNTIKQAAEDYNSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSR F G+NKVMQI+LGRS+SDEI+ GLHKVS++LHGN GLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIALGRSESDEIKNGLHKVSEVLHGNAGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           E+YD+ARTGS A+EKVEL+EGPL QFSHEMEP LRK G+PVRLNKGVVELV+D+VVCEEG
Sbjct: 121 EEYDFARTGSIATEKVELQEGPLEQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K LSPESA ILR LG +TA FRL+L+CRWSPG+FELY+ GP +S VES+
Sbjct: 181 KPLSPESARILRLLGSKTATFRLHLICRWSPGEFELYVPGPGDSGVESS 229

[Close]

BLAST of CsaV3_2G018120 vs. TrEMBL
Match: tr|M5XU08|M5XU08_PRUPE (Ribosome assembly factor mrt4 OS=Prunus persica OX=3760 GN=PRUPE_1G562900 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.1e-97
Identity = 177/229 (77.29%), Postives = 207/229 (90.39%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HK+++V  IRQA E+Y+SV+VF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKETIVNSIRQAAEDYSSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSR F G+NKVMQISLGRSDSDEIRP LHK+SK+LHGN GLCFTNLPKEEVERLF+EY
Sbjct: 61  KSTSRFFLGSNKVMQISLGRSDSDEIRPDLHKISKVLHGNAGLCFTNLPKEEVERLFSEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           ++YD+ARTGS A+EKVEL+EGPL QF+HEMEP LRK G+PVRLNKGVVELVSDF+VC+EG
Sbjct: 121 KEYDFARTGSIATEKVELQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFLVCDEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K LSPESA ILR LG++ A FRL+L+ RWSPG+FELY  GP++S VES+
Sbjct: 181 KPLSPESARILRLLGIKMATFRLHLISRWSPGEFELYGPGPDDSGVESS 229

[Close]

BLAST of CsaV3_2G018120 vs. TrEMBL
Match: tr|D7T050|D7T050_VITVI (Ribosome assembly factor mrt4 OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01000 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 7.2e-97
Identity = 179/229 (78.17%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR HK+S+V  IRQAVENY+S++VF+ ENMRNLKFKE RE+L
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSR F G+NKVMQI++GRS +DEIRPGL KVSKLLHG+TGL FTNLPKEEV+RLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           E+YD+ARTGS A EKVELKEGPL QF+HEMEP LRK G+PVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
             LSPESA ILR LG++ A FRL+LVCRWSP +F+LY +G ++SDVES+
Sbjct: 181 TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS 229

[Close]

BLAST of CsaV3_2G018120 vs. TrEMBL
Match: tr|A0A2N9IEA6|A0A2N9IEA6_FAGSY (Ribosome assembly factor mrt4 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50984 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.1e-96
Identity = 174/229 (75.98%), Postives = 205/229 (89.52%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKT+KKGR+HK+++V  IR+A E Y+  +VF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTRKKGREHKEAVVNAIREAAETYSWAYVFSFENMRNLKFKEFRDQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SR F G+NKVMQ++LGRS +DE+R G+++VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRFFLGSNKVMQVALGRSAADEVRSGIYQVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           E+YD+ARTGS A+EKVELKEGPL QF+HEMEP LRK G+PVRLNK VVEL+SDFVVCEEG
Sbjct: 121 EEYDFARTGSTATEKVELKEGPLEQFTHEMEPFLRKQGMPVRLNKAVVELLSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K LSPESA ILR LG++ A FRL+L+CRWSP DFELYI+ PE+SDVESA
Sbjct: 181 KPLSPESARILRLLGIQMAKFRLHLICRWSPEDFELYIERPEDSDVESA 229

The following BLAST results are available for this feature:

BLAST of CsaV3_2G018120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649395.1	9.5e-125	100.00	PREDICTED: mRNA turnover protein 4 homolog [Cucumis sativus]	[more]
XP_022157470.1	1.4e-115	91.27	mRNA turnover protein 4 homolog [Momordica charantia]	[more]
XP_022933518.1	1.5e-114	90.39	mRNA turnover protein 4 homolog [Cucurbita moschata]	[more]
XP_023529350.1	4.4e-114	89.96	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022969955.1	1.3e-113	89.96	mRNA turnover protein 4 homolog [Cucurbita maxima]	[more]

BLAST of CsaV3_2G018120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G25260.1	3.1e-85	70.05	Ribosomal protein L10 family protein	[more]
AT3G11250.1	1.2e-12	25.88	Ribosomal protein L10 family protein	[more]
AT3G09200.1	1.6e-12	25.88	Ribosomal protein L10 family protein	[more]

BLAST of CsaV3_2G018120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A4FV84\|MRT4_BOVIN	1.6e-54	51.67	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
sp\|Q9UKD2\|MRT4_HUMAN	1.6e-54	49.13	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
sp\|Q9D0I8\|MRT4_MOUSE	1.7e-53	51.67	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
sp\|Q86HD3\|MRT4_DICDI	5.8e-41	38.43	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
sp\|Q7S302\|MRT4_NEUCR	1.1e-34	36.32	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of CsaV3_2G018120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM77\|A0A0A0LM77_CUCSA	6.5e-106	96.62	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]
tr\|A0A2P6PDT8\|A0A2P6PDT8_ROSCH	4.5e-99	77.73	Ribosome assembly factor mrt4 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g022425...	[more]
tr\|M5XU08\|M5XU08_PRUPE	1.1e-97	77.29	Ribosome assembly factor mrt4 OS=Prunus persica OX=3760 GN=PRUPE_1G562900 PE=3 S...	[more]
tr\|D7T050\|D7T050_VITVI	7.2e-97	78.17	Ribosome assembly factor mrt4 OS=Vitis vinifera OX=29760 GN=VIT_12s0034g01000 PE...	[more]
tr\|A0A2N9IEA6\|A0A2N9IEA6_FAGSY	2.1e-96	75.98	Ribosome assembly factor mrt4 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50984 PE=3...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000027	ribosomal large subunit assembly
GO:0042254	ribosome biogenesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR033867	Mrt4
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008150	biological_process
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G018120.1	CsaV3_2G018120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.90.105.20		coord: 125..203 e-value: 1.7E-68 score: 231.8
None	No IPR available	GENE3D	G3DSA:3.30.70.1730		coord: 30..124 e-value: 1.7E-68 score: 231.8 coord: 204..210 e-value: 1.7E-68 score: 231.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21141:SF37	MRNA TURNOVER PROTEIN 4 HOMOLOG	coord: 1..214
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..214
None	No IPR available	SUPERFAMILY	SSF160369	Ribosomal protein L10-like	coord: 20..143
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 19..120 e-value: 2.6E-19 score: 69.1
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 21..184 e-value: 1.89459E-83 score: 247.491

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G018120	CSPI02G15560	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G018120	Cucsa.250020	Cucumber (Gy14) v1	cgycucB380
CsaV3_2G018120	CsGy2G015540	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G018120	Cla007795	Watermelon (97103) v1	cucwmB154
CsaV3_2G018120	MELO3C023261	Melon (DHL92) v3.5.1	cucmeB104
CsaV3_2G018120	ClCG02G000650	Watermelon (Charleston Gray)	cucwcgB139
CsaV3_2G018120	Lsi10G007120	Bottle gourd (USVL1VR-Ls)	cuclsiB106
CsaV3_2G018120	MELO3C023261.2	Melon (DHL92) v3.6.1	cucmedB097
CsaV3_2G018120	Cla97C02G026920	Watermelon (97103) v2	cucwmbB124
CsaV3_2G018120	Bhi10G001904	Wax gourd	cucwgoB189

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G018120	Cucumber (Chinese Long) v3	cuccucB092
CsaV3_2G018120	Silver-seed gourd	carcucB0268
CsaV3_2G018120	Silver-seed gourd	carcucB0756
CsaV3_2G018120	Silver-seed gourd	carcucB1102
CsaV3_2G018120	Cucurbita maxima (Rimu)	cmacucB0652
CsaV3_2G018120	Cucurbita maxima (Rimu)	cmacucB0695
CsaV3_2G018120	Cucurbita moschata (Rifu)	cmocucB0680
CsaV3_2G018120	Cucurbita moschata (Rifu)	cmocucB0638
CsaV3_2G018120	Cucurbita moschata (Rifu)	cmocucB0642
CsaV3_2G018120	Cucurbita pepo (Zucchini)	cpecucB0335
CsaV3_2G018120	Cucurbita pepo (Zucchini)	cpecucB0887
CsaV3_2G018120	Wild cucumber (PI 183967)	cpicucB329
CsaV3_2G018120	Watermelon (97103) v2	cucwmbB104
CsaV3_2G018120	Wax gourd	cucwgoB196