MELO3C023172 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023172
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Sister chromatid cohesion 1 protein 3
Location	chr8 : 16375914 .. 16376732 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGATCCAGTGATAAATTTGAAAGAACTGCAGCTTAGCATTCTGGGACAAGAAGTAAAATAATGTTTTATAGGATTTGATAGTCTATCCTAGGAATGTTTTGTAATAAGTTGCTTGTGCTGAAATGTGTAAGTTGGTAAAGATTTCTGATTGTTTTGATTTTTGCAACTTTATTTTAATCGTTGCATTGAAAATATGAGCTGTTACAGTTTTGGTTTCGAGGAGAAAAGAAATGTTTTACTCGCACACGTTGTTGGCCCGTAAAACCCCATTGGGGACCGTGTGGTGTGCAGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTATGAGAAGACTAAAATTCCTGTTGTTGTTGGTGAGTATCTTATTTTATTTGTATTGGAACTTTTACATCCCCACTAAGATGGGGTTTCTCTGCCTTTATTGTTAAATTCTTGGCCATTTGCCATTTGTATTTTCAAGGTGTGGGTTTTCAAGTGCATGTATGAATTTTTGTGAGTTTGGATGACCTCTGATTCTTGTTTGGGATGGACGTCCTTTTTGTAGATGCAATCATGTTTGGAGAAGTTCCTCTTGCCTTGCGGACGTCAAGCTACCTTCTACTGGGTGTTGTGCGGATTTATTCAAAACAAATTGATTATTTAAAACATGATGTCGATGTTTTGGTGATGGAGTTACGAAAAATGCATATGCACGCTTCAGCGATACTCACTTTGCCTGATAGTGCTTATCAAGCACCGTTTTATTCTATTACTTTTCCTGCGACTTTTGATCTTGATGCCCTGGAATTGGATAGTGATATCAACCATGATGGGTAA

mRNA sequence

AAGGATCCAGTGATAAATTTGAAAGAACTGCAGCTTAGCATTCTGGGACAAGAAGTAAAATAATGTTTTATAGGATTTGATAGTCTATCCTAGGAATGTTTTGTAATAAGTTGCTTGTGCTGAAATGTGTAAGTTGGTAAAGATTTCTGATTGTTTTGATTTTTGCAACTTTATTTTAATCGTTGCATTGAAAATATGAGCTGTTACAGTTTTGGTTTCGAGGAGAAAAGAAATGTTTTACTCGCACACGTTGTTGGCCCGTAAAACCCCATTGGGGACCGTGTGGTGTGCAGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTATGAGAAGACTAAAATTCCTGTTGTTGTTGATGCAATCATGTTTGGAGAAGTTCCTCTTGCCTTGCGGACGTCAAGCTACCTTCTACTGGGTGTTGTGCGGATTTATTCAAAACAAATTGATTATTTAAAACATGATGTCGATGTTTTGGTGATGGAGTTACGAAAAATGCATATGCACGCTTCAGCGATACTCACTTTGCCTGATAGTGCTTATCAAGCACCGTTTTATTCTATTACTTTTCCTGCGACTTTTGATCTTGATGCCCTGGAATTGGATAGTGATATCAACCATGATGGGTAA

Coding sequence (CDS)

ATGTTTTACTCGCACACGTTGTTGGCCCGTAAAACCCCATTGGGGACCGTGTGGTGTGCAGCTCATTTGCAGCACCGTCTCAACAAGAAAGACTATGAGAAGACTAAAATTCCTGTTGTTGTTGATGCAATCATGTTTGGAGAAGTTCCTCTTGCCTTGCGGACGTCAAGCTACCTTCTACTGGGTGTTGTGCGGATTTATTCAAAACAAATTGATTATTTAAAACATGATGTCGATGTTTTGGTGATGGAGTTACGAAAAATGCATATGCACGCTTCAGCGATACTCACTTTGCCTGATAGTGCTTATCAAGCACCGTTTTATTCTATTACTTTTCCTGCGACTTTTGATCTTGATGCCCTGGAATTGGATAGTGATATCAACCATGATGGGTAA

Protein sequence

MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLLLGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDALELDSDINHDG*

Homology

[Close]

BLAST of MELO3C023172 vs. Swiss-Prot
Match: SCC13_ARATH (Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARK PLGTVWCAAH+  RL K  Y    IP  VD IMF EVPLALRTSS+LL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           +GVVRIYSK++DYL +D ++L   + K  +  S  + LP+ A QAP  S+T P   +LD 
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFV--STQVNLPEDARQAPPESVTLPQALNLDE 120

Query: 121 LELDSD 127
            +L+ D
Sbjct: 121 FDLEDD 124

[Close]

BLAST of MELO3C023172 vs. Swiss-Prot
Match: SSC14_ARATH (Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-26
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS  +LA+K PLGT+W AAHL+ +L K     T I V VD+I+F E P+ALR SS+LL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYS++++YL  D    ++++++     SA + LP     AP++SIT P TFDLD 
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQ--AFRSAAVDLPPEESTAPYHSITLPETFDLDD 120

Query: 121 LEL-DSDI 128
            EL D++I
Sbjct: 121 FELPDNEI 126

[Close]

BLAST of MELO3C023172 vs. Swiss-Prot
Match: SCC12_ARATH (Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-16
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEV-PLALRTSSYL 60
           MFYSH L++RK PLG +W AA+   +L K   + T IP  VD I+  E+  L  R  +YL
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 61  LLGVVRIYSKQIDYLKHDVDVLVMELR----KMHMHASAILTLPDSAYQAPFYSITFPAT 120
           LLGVVRIYSK++D+L  D +  ++ ++    K        ++LP S      +SI  P  
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPAS---IECFSIALPER 120

Query: 121 FDLDALEL 124
           F+LDA +L
Sbjct: 121 FELDAFDL 125

[Close]

BLAST of MELO3C023172 vs. Swiss-Prot
Match: RD21L_AILME (Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 41/126 (32.54%), Postives = 74/126 (58.73%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFY+H L++++ PL  +W AAH + +L K    +  + + ++ I+  +V +ALRTS +LL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATF-DLD 120
           LGVVRIY+++  YL  D +  +++++        ++ LP   ++A + +IT P  F D D
Sbjct: 61  LGVVRIYNRKAKYLLADCNEALLKMKM--TFRPGLVDLPKENFEAAYNAITLPEEFHDFD 120

Query: 121 ALELDS 126
              +++
Sbjct: 121 TQNVNA 124

[Close]

BLAST of MELO3C023172 vs. Swiss-Prot
Match: RD21L_HUMAN (Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21L1 PE=2 SV=3)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-15
Identity = 41/126 (32.54%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFY+H L++++ PL  +W AAH + +L K    +  + + ++ I+  +V +ALRTS +LL
Sbjct: 1   MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKIALRTSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATF-DLD 120
           LGVVRIY+++  YL  D     ++++        ++ LP   ++A + +IT P  F D D
Sbjct: 61  LGVVRIYNRKAKYLLADCSEAFLKMKM--TFCPGLVDLPKENFEASYNAITLPEEFHDFD 120

Query: 121 ALELDS 126
              +++
Sbjct: 121 TQNMNA 124

[Close]

BLAST of MELO3C023172 vs. TrEMBL
Match: A0A0A0L109_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G153290 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-65
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKI VVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKISVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDS YQAPFYSIT PATFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSVYQAPFYSITLPATFDLDA 120

Query: 121 LELDSDINHDG 132
           LELDSDI HDG
Sbjct: 121 LELDSDIYHDG 131

[Close]

BLAST of MELO3C023172 vs. TrEMBL
Match: A0A061E3C1_THECC (Cohesin subunit rad21, putative isoform 1 OS=Theobroma cacao GN=TCM_005931 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK  + AS  + LP+ A QAPF +IT P TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRK--VFASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDSDINHDG 132
           +ELD D+  +G
Sbjct: 121 MELDGDMCTEG 129

[Close]

BLAST of MELO3C023172 vs. TrEMBL
Match: A0A061DVE5_THECC (Cohesin subunit rad21, putative isoform 2 OS=Theobroma cacao GN=TCM_005931 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK  + AS  + LP+ A QAPF +IT P TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRK--VFASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDSDINHDG 132
           +ELD D+  +G
Sbjct: 121 MELDGDMCTEG 129

[Close]

BLAST of MELO3C023172 vs. TrEMBL
Match: A0A0J8BKI4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g218720 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 77/128 (60.16%), Postives = 95/128 (74.22%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHT LARK PLGTVWCAAHLQH+L K  Y  T IP  V+ I+F EVP+ALR S +LL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYASTNIPSTVERIIFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSKQ+DYL HD +VL + LR    H +  + LP++A QA F +IT P T+ LDA
Sbjct: 61  LGVVRIYSKQVDYLHHDCNVLFVSLRNAFRHVN--VNLPENATQAQFNAITLPETYALDA 120

Query: 121 LELDSDIN 129
           L++D D++
Sbjct: 121 LDIDDDLS 126

[Close]

BLAST of MELO3C023172 vs. TrEMBL
Match: D7T2W2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01440 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-35
Identity = 78/131 (59.54%), Postives = 98/131 (74.81%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHT LARK PLGTVWCAAHLQH+L K  Y  T IP  V+ IMF EVP+ALR S +LL
Sbjct: 1   MFYSHTFLARKGPLGTVWCAAHLQHKLKKSHYTATDIPSTVERIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSK++DYL  D +++++ +RK    +S  + LP+ A  APF+SIT P TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLYQDCNIVLIGIRK--AFSSIEVNLPEDASHAPFHSITLPDTFELDA 120

Query: 121 LELDSDINHDG 132
           L+LD+D   +G
Sbjct: 121 LDLDADFYVEG 129

[Close]

BLAST of MELO3C023172 vs. TAIR10
Match: AT3G59550.1 (AT3G59550.1 Rad21/Rec8-like family protein)

HSP 1 Score: 137.1 bits (344), Expect = 7.8e-33
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARK PLGTVWCAAH+  RL K  Y    IP  VD IMF EVPLALRTSS+LL
Sbjct: 1   MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPLALRTSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           +GVVRIYSK++DYL +D ++L   + K  +  S  + LP+ A QAP  S+T P   +LD 
Sbjct: 61  VGVVRIYSKKVDYLYNDWNLLNTWVAKAFV--STQVNLPEDARQAPPESVTLPQALNLDE 120

Query: 121 LELDSD 127
            +L+ D
Sbjct: 121 FDLEDD 124

[Close]

BLAST of MELO3C023172 vs. TAIR10
Match: AT5G16270.1 (AT5G16270.1 sister chromatid cohesion 1 protein 4)

HSP 1 Score: 120.9 bits (302), Expect = 5.8e-28
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS  +LA+K PLGT+W AAHL+ +L K     T I V VD+I+F E P+ALR SS+LL
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYS++++YL  D    ++++++     SA + LP     AP++SIT P TFDLD 
Sbjct: 61  LGVVRIYSRKVNYLFDDCSEALLKVKQ--AFRSAAVDLPPEESTAPYHSITLPETFDLDD 120

Query: 121 LEL-DSDI 128
            EL D++I
Sbjct: 121 FELPDNEI 126

[Close]

BLAST of MELO3C023172 vs. TAIR10
Match: AT5G40840.2 (AT5G40840.2 Rad21/Rec8-like family protein)

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-17
Identity = 52/128 (40.62%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEV-PLALRTSSYL 60
           MFYSH L++RK PLG +W AA+   +L K   + T IP  VD I+  E+  L  R  +YL
Sbjct: 1   MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60

Query: 61  LLGVVRIYSKQIDYLKHDVDVLVMELR----KMHMHASAILTLPDSAYQAPFYSITFPAT 120
           LLGVVRIYSK++D+L  D +  ++ ++    K        ++LP S      +SI  P  
Sbjct: 61  LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPAS---IECFSIALPER 120

Query: 121 FDLDALEL 124
           F+LDA +L
Sbjct: 121 FELDAFDL 125

[Close]

BLAST of MELO3C023172 vs. TAIR10
Match: AT5G05490.1 (AT5G05490.1 Rad21/Rec8-like family protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 6  TLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLLLGVVR 65
          TLLARK PLG +W AA L  ++N+K  +K  I  + + I+   VP+ALR S  L+ GVV 
Sbjct: 16 TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVPMALRLSGILMGGVVI 75

Query: 66 IYSKQIDYLKHDVDVLVMEL 86
          +Y +++  L  DV+  ++E+
Sbjct: 76 VYERKVKLLFDDVNRFLVEI 95

[Close]

BLAST of MELO3C023172 vs. NCBI nr
Match: gi|659121743|ref|XP_008460792.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120

Query: 121 LELDSDINHDG 132
           LELDSDINHDG
Sbjct: 121 LELDSDINHDG 131

[Close]

BLAST of MELO3C023172 vs. NCBI nr
Match: gi|778692207|ref|XP_011653424.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 2.5e-65
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKI VVVDAIMFGEVPLALRTSSYLL
Sbjct: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKISVVVDAIMFGEVPLALRTSSYLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDS YQAPFYSIT PATFDLDA
Sbjct: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSVYQAPFYSITLPATFDLDA 120

Query: 121 LELDSDINHDG 132
           LELDSDI HDG
Sbjct: 121 LELDSDIYHDG 131

[Close]

BLAST of MELO3C023172 vs. NCBI nr
Match: gi|590724877|ref|XP_007052592.1| (Cohesin subunit rad21, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-36
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK  + AS  + LP+ A QAPF +IT P TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRK--VFASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDSDINHDG 132
           +ELD D+  +G
Sbjct: 121 MELDGDMCTEG 129

[Close]

BLAST of MELO3C023172 vs. NCBI nr
Match: gi|590724873|ref|XP_007052591.1| (Cohesin subunit rad21, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-36
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQHRL K  Y    IP  VD IMF EVP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTAADIPSTVDLIMFPEVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           LGVVRIYSK++DYL HD +++++ LRK  + AS  + LP+ A QAPF +IT P TF+LDA
Sbjct: 61  LGVVRIYSKKVDYLFHDCNIVLIGLRK--VFASVQVDLPEDARQAPFQAITLPQTFNLDA 120

Query: 121 LELDSDINHDG 132
           +ELD D+  +G
Sbjct: 121 MELDGDMCTEG 129

[Close]

BLAST of MELO3C023172 vs. NCBI nr
Match: gi|645250805|ref|XP_008231383.1| (PREDICTED: sister chromatid cohesion 1 protein 3 [Prunus mume])

HSP 1 Score: 159.1 bits (401), Expect = 5.4e-36
Identity = 82/130 (63.08%), Postives = 96/130 (73.85%), Query Frame = 1


Query: 1   MFYSHTLLARKTPLGTVWCAAHLQHRLNKKDYEKTKIPVVVDAIMFGEVPLALRTSSYLL 60
           MFYS T LARK PLGTVWCAAHLQ RL K  Y  T IP  VD IMF +VP+ALR S +LL
Sbjct: 1   MFYSQTFLARKGPLGTVWCAAHLQSRLKKSHYTSTDIPSTVDRIMFPDVPIALRMSGHLL 60

Query: 61  LGVVRIYSKQIDYLKHDVDVLVMELRKMHMHASAILTLPDSAYQAPFYSITFPATFDLDA 120
           +GVVRIYSK++DYL  D +V++  LRK    AS  L LP++A QAP  SIT P TFDLDA
Sbjct: 61  VGVVRIYSKKVDYLYQDCNVVLTSLRK--AFASIDLNLPENARQAPVQSITLPDTFDLDA 120

Query: 121 LELDSDINHD 131
           L+LD+D+ HD
Sbjct: 121 LDLDTDLAHD 128

The following BLAST results are available for this feature:

BLAST of MELO3C023172 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SCC13_ARATH	1.4e-31	57.14	Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2	[more]
SSC14_ARATH	1.0e-26	50.00	Sister chromatid cohesion 1 protein 4 OS=Arabidopsis thaliana GN=SYN4 PE=2 SV=1	[more]
SCC12_ARATH	6.2e-16	40.63	Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2	[more]
RD21L_AILME	1.4e-15	32.54	Double-strand-break repair protein rad21-like protein 1 OS=Ailuropoda melanoleuc...	[more]
RD21L_HUMAN	3.1e-15	32.54	Double-strand-break repair protein rad21-like protein 1 OS=Homo sapiens GN=RAD21...	[more]

BLAST of MELO3C023172 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L109_CUCSA	1.7e-65	96.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G153290 PE=4 SV=1	[more]
A0A061E3C1_THECC	1.7e-36	61.83	Cohesin subunit rad21, putative isoform 1 OS=Theobroma cacao GN=TCM_005931 PE=4 ...	[more]
A0A061DVE5_THECC	1.7e-36	61.83	Cohesin subunit rad21, putative isoform 2 OS=Theobroma cacao GN=TCM_005931 PE=4 ...	[more]
A0A0J8BKI4_BETVU	1.1e-35	60.16	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g218720 PE=4 S...	[more]
D7T2W2_VITVI	1.4e-35	59.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01440 PE=4 SV=...	[more]

BLAST of MELO3C023172 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59550.1	7.8e-33	57.14	Rad21/Rec8-like family protein	[more]
AT5G16270.1	5.8e-28	50.00	sister chromatid cohesion 1 protein 4	[more]
AT5G40840.2	3.5e-17	40.63	Rad21/Rec8-like family protein	[more]
AT5G05490.1	2.2e-11	41.25	Rad21/Rec8-like family protein	[more]

BLAST of MELO3C023172 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121743\|ref\|XP_008460792.1\|	2.4e-68	100.00	PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis melo]	[more]
gi\|778692207\|ref\|XP_011653424.1\|	2.5e-65	96.95	PREDICTED: sister chromatid cohesion 1 protein 3 [Cucumis sativus]	[more]
gi\|590724877\|ref\|XP_007052592.1\|	2.4e-36	61.83	Cohesin subunit rad21, putative isoform 2 [Theobroma cacao]	[more]
gi\|590724873\|ref\|XP_007052591.1\|	2.4e-36	61.83	Cohesin subunit rad21, putative isoform 1 [Theobroma cacao]	[more]
gi\|645250805\|ref\|XP_008231383.1\|	5.4e-36	63.08	PREDICTED: sister chromatid cohesion 1 protein 3 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006910	Rad21_Rec8_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0048229	gametophyte development
biological_process	GO:1903047	mitotic cell cycle process
biological_process	GO:0006996	organelle organization
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
biological_process	GO:0008150	biological_process
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0043232	intracellular non-membrane-bounded organelle
cellular_component	GO:0031981	nuclear lumen
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023172T1	MELO3C023172T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006910	Rad21/Rec8-like protein, N-terminal	PFAM	PF04825	Rad21_Rec8_N	coord: 1..91 score: 1.1
None	No IPR available	PANTHER	PTHR12585	SCC1 / RAD21 FAMILY MEMBER	coord: 2..126 score: 7.5
None	No IPR available	PANTHER	PTHR12585:SF36	SISTER CHROMATID COHESION 1 PROTEIN 3	coord: 2..126 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023172	Csa4G153290	Cucumber (Chinese Long) v2	cumeB331
MELO3C023172	Cla000830	Watermelon (97103) v1	mewmB582
MELO3C023172	ClCG04G000290	Watermelon (Charleston Gray)	mewcgB526
MELO3C023172	Cla97C04G068650	Watermelon (97103) v2	mewmbB534
MELO3C023172	Bhi03G002132	Wax gourd	mewgoB642
MELO3C023172	CSPI04G10410	Wild cucumber (PI 183967)	cpimeB332
MELO3C023172	Cucsa.038060	Cucumber (Gy14) v1	cgymeB011
MELO3C023172	Lsi01G018800	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023172	CsGy4G010090	Cucumber (Gy14) v2	cgybmeB287
MELO3C023172	CsaV3_4G010560	Cucumber (Chinese Long) v3	cucmeB338

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023172	Silver-seed gourd	carmeB0195
MELO3C023172	Silver-seed gourd	carmeB0288
MELO3C023172	Wax gourd	mewgoB658
MELO3C023172	Cucurbita maxima (Rimu)	cmameB613
MELO3C023172	Cucurbita maxima (Rimu)	cmameB808
MELO3C023172	Cucurbita maxima (Rimu)	cmameB810
MELO3C023172	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023172	Cucurbita moschata (Rifu)	cmomeB792
MELO3C023172	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023172	Watermelon (97103) v1	mewmB588
MELO3C023172	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C023172	Cucurbita pepo (Zucchini)	cpemeB451