MELO3C022992 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022992
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein .
Locationchr5 : 5718895 .. 5719407 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGCAGTGAAGATCAATCTAATAAGTTAAAAGCAAAGACTGCTAGAGCAAAAAAAAGATGTCTTTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTTCAACAGAGGCTCACCGGCCAAGGCTAACTCAAAATGATCCGGAAATGAAGTCGTTGGTGGGTGGTCATATTGGTGACAAAACCAAACCTTACCATGGAGCAAAAGGGTGCAAGAAAGGCCCACATCCCAACTGCAAGCAACACCATGGTTGACTCAAAGGGTCTTTCTCTGACGAGATTAGGCCATGCTGTTAGGGAGAACTAAATAAAACTACTGCATGCAAAAGCCTATATTGGCTGCCCCTCAACGATTATGCATGGTTTCTAAATATTGTAGTCTAATGTTTGTGTGTTGAAGTTGGTGTCTTTGTAATATGGTTGTTTGTTGTGAGATCTAATATCTATCTATATATATGCTTTTCTTTTGTTTTTGGCAATTCTAGCAAGATCTTTAA

mRNA sequence

TTTGCAGTGAAGATCAATCTAATAAGTTAAAAGCAAAGACTGCTAGAGCAAAAAAAAGATGTCTTTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTTCAACAGAGGCTCACCGGCCAAGGCTAACTCAAAATGATCCGGAAATGAAGTCGTTGGTGGGTGGTCATATTGGTGACAAAACCAAACCTTACCATGGAGCAAAAGGGTGCAAGAAAGGCCCACATCCCAACTGCAAGCAACACCATGGTTGACTCAAAGGGTCTTTCTCTGACGAGATTAGGCCATGCTGTTAGGGAGAACTAAATAAAACTACTGCATGCAAAAGCCTATATTGGCTGCCCCTCAACGATTATGCATGGTTTCTAAATATTGTAGTCTAATGTTTGTGTGTTGAAGTTGGTGTCTTTGTAATATGGTTGTTTGTTGTGAGATCTAATATCTATCTATATATATGCTTTTCTTTTGTTTTTGGCAATTCTAGCAAGATCTTTAA

Coding sequence (CDS)

ATGTCTTTAAAATGGGTTATGGTATTTGCAATTGCAATGGTGCTTCTCACTGCTGAGACTTCAACAGAGGCTCACCGGCCAAGGCTAACTCAAAATGATCCGGAAATGAAGTCGTTGGTGGGTGGTCATATTGGTGACAAAACCAAACCTTACCATGGAGCAAAAGGGTGCAAGAAAGGCCCACATCCCAACTGCAAGCAACACCATGGTTGA

Protein sequence

MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDPEMKSLVGGHIGDKTKPYHGAKGCKKGPHPNCKQHHG*
Homology
[Close]
BLAST of MELO3C022992 vs. TrEMBL
Match: A0A0A0LII8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176170 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-26
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDPEMKSLVGGHIGDKTKPYHGAKGCKKG 60
          MSLKWVMVFAIAMVLLTAET+TEAHRP LT NDPEMKS+V GH GDKT P HG KGCKKG
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMV-GHAGDKTIPAHGGKGCKKG 60

Query: 61 PHPNCKQHHG 71
          PH NCK+HHG
Sbjct: 61 PHSNCKEHHG 69

[Close]
BLAST of MELO3C022992 vs. NCBI nr
Match: gi|700206484|gb|KGN61603.1| (hypothetical protein Csa_2G176170 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-26
Identity = 59/70 (84.29%), Postives = 62/70 (88.57%), Query Frame = 1 

Query: 1  MSLKWVMVFAIAMVLLTAETSTEAHRPRLTQNDPEMKSLVGGHIGDKTKPYHGAKGCKKG 60
          MSLKWVMVFAIAMVLLTAET+TEAHRP LT NDPEMKS+V GH GDKT P HG KGCKKG
Sbjct: 1  MSLKWVMVFAIAMVLLTAETATEAHRPTLTPNDPEMKSMV-GHAGDKTIPAHGGKGCKKG 60

Query: 61 PHPNCKQHHG 71
          PH NCK+HHG
Sbjct: 61 PHSNCKEHHG 69

The following BLAST results are available for this feature:
BLAST of MELO3C022992 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LII8_CUCSA1.9e-2684.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G176170 PE=4 SV=1[more]
BLAST of MELO3C022992 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206484|gb|KGN61603.1|2.7e-2684.29hypothetical protein Csa_2G176170 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU49906melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022992T1MELO3C022992T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU49906MU49906transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022992Cla97C06G116590Watermelon (97103) v2mewmbB388
MELO3C022992CSPI02G10380Wild cucumber (PI 183967)cpimeB141
MELO3C022992CsGy2G010430Cucumber (Gy14) v2cgybmeB122
MELO3C022992CsaV3_2G012800Cucumber (Chinese Long) v3cucmeB143
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022992Silver-seed gourdcarmeB0233
MELO3C022992Silver-seed gourdcarmeB0238
MELO3C022992Silver-seed gourdcarmeB0778
MELO3C022992Silver-seed gourdcarmeB0939
MELO3C022992Silver-seed gourdcarmeB1046
MELO3C022992Cucumber (Chinese Long) v3cucmeB232
MELO3C022992Watermelon (97103) v2mewmbB384
MELO3C022992Watermelon (97103) v2mewmbB403
MELO3C022992Wax gourdmewgoB450
MELO3C022992Wax gourdmewgoB479
MELO3C022992Wax gourdmewgoB470
MELO3C022992Melon (DHL92) v3.5.1memeB147
MELO3C022992Cucumber (Gy14) v1cgymeB434
MELO3C022992Cucumber (Gy14) v1cgymeB624
MELO3C022992Cucurbita maxima (Rimu)cmameB234
MELO3C022992Cucurbita maxima (Rimu)cmameB338
MELO3C022992Cucurbita maxima (Rimu)cmameB576
MELO3C022992Cucurbita maxima (Rimu)cmameB760
MELO3C022992Cucurbita maxima (Rimu)cmameB845
MELO3C022992Cucurbita moschata (Rifu)cmomeB221
MELO3C022992Cucurbita moschata (Rifu)cmomeB331
MELO3C022992Cucurbita moschata (Rifu)cmomeB467
MELO3C022992Cucurbita moschata (Rifu)cmomeB752
MELO3C022992Cucurbita moschata (Rifu)cmomeB828
MELO3C022992Wild cucumber (PI 183967)cpimeB226
MELO3C022992Cucumber (Chinese Long) v2cumeB131
MELO3C022992Cucumber (Chinese Long) v2cumeB231
MELO3C022992Watermelon (Charleston Gray)mewcgB385
MELO3C022992Watermelon (Charleston Gray)mewcgB388
MELO3C022992Watermelon (Charleston Gray)mewcgB402
MELO3C022992Watermelon (97103) v1mewmB410
MELO3C022992Watermelon (97103) v1mewmB413
MELO3C022992Watermelon (97103) v1mewmB430
MELO3C022992Cucurbita pepo (Zucchini)cpemeB137
MELO3C022992Cucurbita pepo (Zucchini)cpemeB310
MELO3C022992Cucurbita pepo (Zucchini)cpemeB578
MELO3C022992Cucurbita pepo (Zucchini)cpemeB694
MELO3C022992Cucurbita pepo (Zucchini)cpemeB804
MELO3C022992Bottle gourd (USVL1VR-Ls)lsimeB025
MELO3C022992Bottle gourd (USVL1VR-Ls)lsimeB360
MELO3C022992Bottle gourd (USVL1VR-Ls)lsimeB364
MELO3C022992Cucumber (Gy14) v2cgybmeB195