MELO3C022601.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C022601.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosomal protein L23a
Locationchr10 : 16639623 .. 16641299 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAGAAGAAGATTTTTCCATTTTTCAAAATCACACTGTATTCCTTATCATTCCAAATAAAAATGCCCAAGAGACAAGCTTTCCTTTTCGTTTTTACCTTTCATTTCTTCGCATTCTTTTATCTAGGGCTGCACCACCACCAGATTCGTAGCCGCCGGTAACCTCTCTCTTGAATGCTTCTTAATTTTTTTCGTTATCTCAGGATTTCAGGATCTTTCCCTTCCTCTTACCTCTTTTGTTATAATATTCTTGTTTAACATTGTTTGGGTTAAATTTGTGTGTTGTGATTTTGGTTCCGTGGAGTAACTGTTGTTCATATCGTTTTTCTTCTCATCTTCATTATTGCTTGCTTGGTCTGTAGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGGTATGTGCGCTTTGTCTTTGTTAAAGTATTAGTGTACTATGTCCTTTTTCCTCTTAATTTTGCTCACTGCATTTTCATTTTTGTGTTTTAGATGGTACTTTTCGTTTTCTTGTTTTAATGGTAGCTCCCAAGTTCTTGAGATGGTTTAATGGATATTTTCAGTATGTAATAAACTACTCTCTCCCTTGATGCTTATGAGGTTTTGCAATGCAGAGTTTGTATTTAATTTGATGGTTTTGCAGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGGTATGGTGAATGAATTTAGAAGCAACACTTTGATACCAAAGAATACCATGTTGCTTGTTTACATGCCAAATATTAGTATCTAGGGTTAAATTACAACTACCCTAAACTACATTGTGATGATGACAAAGTATAATCCTACTTATGTAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAAACTTCCTAGGAAAGTATTTGCATTTCAGTGTCCACAATTTTGTTTAAATATATTTGACTGCATCTTGTTGGAATCCTAATCTTTCTTGCTGTTTTTTCTTCTATATATATTGGTAATTAGCTTGCAGCTAGCTCTGGTTGATTGAGTTCAAAACACTCGTGGAGTGTGTTTGAATTATTTGTATTTCAAACACCTTTTTAACATTTCTGAATTCTCATCTTCATAACCTGGCTGTATGGCACCCTACCCGCTCTGTTTTGGCCTTGTCCACTAGGAGTGGAAAGTGGGTCTAGAGGAAATAAGTTGAAACTATGATGGTGCTTATTTAGAATTTAAGGGCCCGTTTGGTAACGTTTCTATTCTCTGTTTCTTGTTTCTTGTTTCCTGTTTCTTCTTTTTTTAGAACAAGAAACAGTAATGCGTTTGATAACTGTT

mRNA sequence

AAAAAAAAAAAAAGAAGAAGATTTTTCCATTTTTCAAAATCACACTGTATTCCTTATCATTCCAAATAAAAATGCCCAAGAGACAAGCTTTCCTTTTCGTTTTTACCTTTCATTTCTTCGCATTCTTTTATCTAGGGCTGCACCACCACCAGATTCGTAGCCGCCGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAAACTTCCTAGGAAAGTATTTGCATTTcAGTGTCCACAATTTTGTTTAAATATATTTGACTGCATCTTGTTGGAATCCTAATCTTTCTTGCTGTTTTTTCTTCTATATATATTGGTAATTAGCTTGCAGCTAGCTCTGGTTGATTGAGTTCAAAACACTCGTGGAGTGTGTTTGAATTATTTGTATTTCAAACACCTTTTTAACATTTCTGAATTCTCATCTTCATAACCTGGCTGTATGGCACCCTACCCGCTCTGTTTTGGCCTTGTCCACTAGGAGTGGAAAGTGGGTCTAGAGGAAATAAGTTGAAACTATGATGGTGCTTATTTAGAATTTAAGGGCCCGTTTGGTAACGTTTCTATTCTCTGTTTCTTGTTTCTTGTTTCCTGTTTCTTCTTTTTTTAGAACAAGAAACAGTAATGCGTTTGATAACTGTT

Coding sequence (CDS)

ATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAA

Protein sequence

MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of MELO3C022601.2 vs. NCBI nr
Match: XP_008460233.1 (PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 6.3e-32
Identity = 127/153 (83.01%), Postives = 129/153 (84.31%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKKMY+IQTKK
Sbjct: 61  SATPRNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 8.2e-32
Identity = 127/153 (83.01%), Postives = 129/153 (84.31%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKKMY+IQTKK
Sbjct: 61  SATPRNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. NCBI nr
Match: XP_022134285.1 (60S ribosomal protein L23A [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 1.4e-31
Identity = 87/153 (56.86%), Postives = 88/153 (57.52%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                                                            VKKMY+IQTKK
Sbjct: 61  SATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 1.8e-31
Identity = 121/153 (79.08%), Postives = 122/153 (79.74%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKKMY+IQTKK
Sbjct: 61  SATPRNKLDQYQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. TAIR10
Match: AT2G39460.1 (ribosomal protein L23AA)

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 110 VKKMYNIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. TAIR10
Match: AT3G55280.1 (ribosomal protein L23AB)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 62/154 (40.26%), Postives = 65/154 (42.21%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPX 60
           M+P K D+TKK                     K AKK       HRPK       PKYP 
Sbjct: 1   MSPAKVDVTKKXXXXXXXXXXXXXXXXXXXXXKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTK 120
                                                             VKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match: sp|Q9AT35|RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-27
Identity = 78/154 (50.65%), Postives = 83/154 (53.90%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPX 60
           M+P K D+TKK+D KAQALKTAKAVKSG T  KK KK       HRP+      NPKYP 
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTK 120
                                                             VKKMY+IQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match: sp|O22644|RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-26
Identity = 77/154 (50.00%), Postives = 81/154 (52.60%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSG-PTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPX 60
           MAP A + KK D KAQALK AKAVKSG  T +KKAKK       HRPK      NPKYP 
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTK 120
                                                             VKKMY+IQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match: sp|Q07761|RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 98/154 (63.64%), Postives = 103/154 (66.88%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPX 60
           MAP KAD +KK+                 T KKK++K       HRPK      NPKYP 
Sbjct: 1   MAPAKADPSKKSXXXXXXXXXXXXXXXXSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTK 120
                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKKMY+IQTK
Sbjct: 61  ISAPGRNKLDQYGILKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match: sp|Q8LD46|R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0 

Query: 110 VKKMYNIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match: sp|Q9M3C3|R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 62/154 (40.26%), Postives = 65/154 (42.21%), Query Frame = 0 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPX 60
           M+P K D+TKK                     K AKK       HRPK       PKYP 
Sbjct: 1   MSPAKVDVTKKXXXXXXXXXXXXXXXXXXXXXKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTK 120
                                                             VKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601.2 vs. TrEMBL
Match: tr|A0A1S3CBK7|A0A1S3CBK7_CUCME (60S ribosomal protein L23a isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499114 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. TrEMBL
Match: tr|A0A1S3CFM9|A0A1S3CFM9_CUCME (60S ribosomal protein L23a OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 86/153 (56.21%), Postives = 88/153 (57.52%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD +KKADPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                                                            VKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. TrEMBL
Match: tr|A0A0A0KNR3|A0A0A0KNR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 120/153 (78.43%), Postives = 121/153 (79.08%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. TrEMBL
Match: tr|W9R299|W9R299_9ROSA (60S ribosomal protein L23A OS=Morus notabilis OX=981085 GN=L484_025406 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 85/153 (55.56%), Postives = 87/153 (56.86%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD TKK+DPKAQA KTAKAVKSGPTFKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                                                            VKKMY+IQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601.2 vs. TrEMBL
Match: tr|A0A1S2YJW5|A0A1S2YJW5_CICAR (60S ribosomal protein L23a-like OS=Cicer arietinum OX=3827 GN=LOC101509208 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.1e-30
Identity = 83/153 (54.25%), Postives = 87/153 (56.86%), Query Frame = 0 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKXXXXXXXHRPKXXXXXXNPKYPXX 60
           MAPKAD++KK DPKAQALKTAKAVKSGP+FKKKAKK       HRPK      NPKYP  
Sbjct: 1   MAPKADVSKKTDPKAQALKTAKAVKSGPSFKKKAKKIRTSVTFHRPKTQTKDRNPKYPRI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKMYNIQTKK 120
                                                            VKKMY+IQ KK
Sbjct: 61  SATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

The following BLAST results are available for this feature:
BLAST of MELO3C022601.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460233.17.4e-33100.00PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo][more]
XP_022939581.16.3e-3283.0160S ribosomal protein L23a [Cucurbita moschata][more]
XP_022993268.18.2e-3283.0160S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal... [more]
XP_022134285.11.4e-3156.8660S ribosomal protein L23A [Momordica charantia][more]
XP_022154290.11.8e-3179.0860S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p... [more]
BLAST of MELO3C022601.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39460.12.8e-1897.73ribosomal protein L23AA[more]
AT3G55280.11.8e-1740.26ribosomal protein L23AB[more]
BLAST of MELO3C022601.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9AT35|RL23A_DAUCA4.1e-2750.6560S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
sp|O22644|RL23A_FRIAG2.1e-2650.0060S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
sp|Q07761|RL23A_TOBAC1.6e-1863.6460S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
sp|Q8LD46|R23A1_ARATH5.1e-1797.7360S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
sp|Q9M3C3|R23A2_ARATH3.3e-1640.2660S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of MELO3C022601.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CBK7|A0A1S3CBK7_CUCME4.9e-33100.0060S ribosomal protein L23a isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499114 PE... [more]
tr|A0A1S3CFM9|A0A1S3CFM9_CUCME2.7e-3156.2160S ribosomal protein L23a OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1[more]
tr|A0A0A0KNR3|A0A0A0KNR3_CUCSA2.7e-3178.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505240 PE=3 SV=1[more]
tr|W9R299|W9R299_9ROSA1.3e-3055.5660S ribosomal protein L23A OS=Morus notabilis OX=981085 GN=L484_025406 PE=3 SV=1[more]
tr|A0A1S2YJW5|A0A1S2YJW5_CICAR5.1e-3054.2560S ribosomal protein L23a-like OS=Cicer arietinum OX=3827 GN=LOC101509208 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR001014Ribosomal_L23/L25_CS
IPR012677Nucleotide-bd_a/b_plait_sf
IPR013025Ribosomal_L25/23
IPR005633Ribosomal_L23/L25_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022601.2.1MELO3C022601.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 1.2E-18
score: 67.0
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 9.7E-14
score: 51.4
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 21.916
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 34..153
e-value: 3.9E-58
score: 196.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availablePANTHERPTHR11620:SF14SUBFAMILY NOT NAMEDcoord: 1..153
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILYSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022601.2Csa5G264270Cucumber (Chinese Long) v2cumedB360
MELO3C022601.2CSPI05G11980Wild cucumber (PI 183967)cpimedB365
MELO3C022601.2CsGy5G009510Cucumber (Gy14) v2cgybmedB311
MELO3C022601.2Cla016913Watermelon (97103) v1medwmB077
MELO3C022601.2ClCG11G000840Watermelon (Charleston Gray)medwcgB044
MELO3C022601.2Cla97C11G207200Watermelon (97103) v2medwmbB044
MELO3C022601.2BhiUN306G45Wax gourdmedwgoB055
MELO3C022601.2Carg27080Silver-seed gourdcarmedB0742
MELO3C022601.2CsaV3_5G012820Cucumber (Chinese Long) v3cucmedB371
MELO3C022601.2CsaV3_5G012620Cucumber (Chinese Long) v3cucmedB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022601.2Cucurbita maxima (Rimu)cmamedB734
MELO3C022601.2Cucurbita pepo (Zucchini)cpemedB430
MELO3C022601.2Bottle gourd (USVL1VR-Ls)lsimedB088
MELO3C022601.2Silver-seed gourdcarmedB0669