MELO3C022601 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022601
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L23
Locationchr10 : 15945619 .. 15946495 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGGTATGTGCGCTTTGTCTTTGTTAAAGTATTAGTGTACTATGTCCTTTTTCCTCTTAATTTTGCTCACTGCATTTTCATTTTTGTGTTTTAGATGGTACTTTTCGTTTTCTTGTTTTAATGGTAGCTCCCAAGTTCTTGAGATGGTTTAATGGATATTTTCAGTATGTAATAAACTACTCTCTCCCTTGATGCTTATGAGGTTTTGCAATGCAGAGTTTGTATTTAATTTGATGGTTTTGCAGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGGTATGGTGAATGAATTTAGAAGCAACACTTTGATACCAAAGAATACCATGTTGCTTGTTTACATGCCAAATATTAGTATCTAGGGTTAAATTACAACTACCCTAAACTACATTGTGATGATGACAAAGTATAATCCTACTTATGTAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAA

mRNA sequence

TGTAGGTGGGTAATTTCGATACAGCTATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAA

Coding sequence (CDS)

ATGGCGCCAAAGGCTGACATGACCAAAAAGGCTGATCCCAAAGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTTAAGAAGAAGGCTAAGAAAATCAGAACATCGGTCACATTCCATCGCCCGAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTATGAACAAGTTGGATCAGTATCAAATTCTTAAATATCCACTCACCACTGAGTCTGCGATGAAGAAGATTGAGGATAATAACATCCTTGTTTTTGTTGTTGATATTCGTGCCGACAAGAAAAAGATTAAAGATGCTGTCAAGAAGATGTATAACATTCAAACCAAGAAAGTCAACACTCTAATCAGACCTGATGGAACAAAGAAGGCATACGTTCGGTTAACCCCAGACTATGATGCTTTGGACGTGGCAAACAAGATCGGAATTATCTAA

Protein sequence

MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII*
Homology
[Close]
BLAST of MELO3C022601 vs. Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-70
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRA+KKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.3e-69
Identity = 134/154 (87.01%), Postives = 139/154 (90.26%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS    NKLDQY ILKYPLTTESAMKKIEDNN LVF+VDI+ADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-68
Identity = 134/154 (87.01%), Postives = 137/154 (88.96%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A + KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS  P NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIK AVKKMY+IQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of MELO3C022601 vs. Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-68
Identity = 133/154 (86.36%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.2e-68
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. TrEMBL
Match: A0A0A0KNR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.0e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. TrEMBL
Match: A0A0A0KQU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-75
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKK AKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 152

[Close]
BLAST of MELO3C022601 vs. TrEMBL
Match: A0A0A0KS61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 2.8e-75
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD +KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRA+KK IKDAVKKMY+IQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]
BLAST of MELO3C022601 vs. TrEMBL
Match: W9R299_9ROSA (60S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.9e-73
Identity = 141/153 (92.16%), Postives = 146/153 (95.42%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKK+DPKAQA KTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKSDPKAQASKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           S  P +KLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SAPPRHKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. TrEMBL
Match: M5X1F0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.7e-72
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD TKK+DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRP+TLKK+RNPKYPR
Sbjct: 1   MAPAKADNTKKSDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPRTLKKERNPKYPR 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS  P NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. TAIR10
Match: AT2G39460.1 (AT2G39460.1 ribosomal protein L23AA)

HSP 1 Score: 259.6 bits (662), Expect = 1.2e-69
Identity = 133/154 (86.36%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. TAIR10
Match: AT3G55280.1 (AT3G55280.1 ribosomal protein L23AB)

HSP 1 Score: 258.1 bits (658), Expect = 3.5e-69
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 1 

Query: 1   MAP-KADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTK 120
           IS TP NKLD YQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of MELO3C022601 vs. NCBI nr
Match: gi|659120521|ref|XP_008460233.1| (PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.1e-79
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK
Sbjct: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. NCBI nr
Match: gi|659120523|ref|XP_008460234.1| (PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65
           DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM
Sbjct: 6   DMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPM 65

Query: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125
           NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI
Sbjct: 66  NKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLI 125

Query: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 154
           RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 126 RPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. NCBI nr
Match: gi|449464192|ref|XP_004149813.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 2.8e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. NCBI nr
Match: gi|659127083|ref|XP_008463516.1| (PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 2.8e-76
Identity = 147/153 (96.08%), Postives = 150/153 (98.04%), Query Frame = 1 

Query: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPMNKLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKK 120
           SVTP NKLDQYQILKYPLTTESAMKKIEDNN LVF+VDIRADKKKIKDAVKKMY+IQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of MELO3C022601 vs. NCBI nr
Match: gi|659120525|ref|XP_008460235.1| (PREDICTED: 60S ribosomal protein L23a isoform X3 [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 8.1e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 7   MTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMN 66
           MTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMN
Sbjct: 1   MTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPMN 60

Query: 67  KLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIR 126
           KLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIR
Sbjct: 61  KLDQYQILKYPLTTESAMKKIEDNNILVFVVDIRADKKKIKDAVKKMYNIQTKKVNTLIR 120

Query: 127 PDGTKKAYVRLTPDYDALDVANKIGII 154
           PDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 PDGTKKAYVRLTPDYDALDVANKIGII 147

The following BLAST results are available for this feature:
BLAST of MELO3C022601 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL23A_DAUCA3.0e-7088.3160S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1[more]
RL23A_TOBAC3.3e-6987.0160S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1[more]
RL23A_FRIAG1.3e-6887.0160S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1[more]
R23A1_ARATH2.1e-6886.3660S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2[more]
R23A2_ARATH6.2e-6885.7160S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1[more]
BLAST of MELO3C022601 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNR3_CUCSA2.0e-7696.08Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505240 PE=3 SV=1[more]
A0A0A0KQU4_CUCSA1.3e-7596.73Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264270 PE=3 SV=1[more]
A0A0A0KS61_CUCSA2.8e-7594.77Uncharacterized protein OS=Cucumis sativus GN=Csa_5G180850 PE=3 SV=1[more]
W9R299_9ROSA5.9e-7392.1660S ribosomal protein L23A OS=Morus notabilis GN=L484_025406 PE=3 SV=1[more]
M5X1F0_PRUPE1.7e-7292.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012791mg PE=3 SV=1[more]
BLAST of MELO3C022601 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G39460.11.2e-6986.36 ribosomal protein L23AA[more]
AT3G55280.13.5e-6985.71 ribosomal protein L23AB[more]
BLAST of MELO3C022601 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120521|ref|XP_008460233.1|2.1e-79100.00PREDICTED: 60S ribosomal protein L23a isoform X1 [Cucumis melo][more]
gi|659120523|ref|XP_008460234.1|1.6e-76100.00PREDICTED: 60S ribosomal protein L23a isoform X2 [Cucumis melo][more]
gi|449464192|ref|XP_004149813.1|2.8e-7696.08PREDICTED: 60S ribosomal protein L23a-like [Cucumis sativus][more]
gi|659127083|ref|XP_008463516.1|2.8e-7696.08PREDICTED: 60S ribosomal protein L23a-like [Cucumis melo][more]
gi|659120525|ref|XP_008460235.1|8.1e-76100.00PREDICTED: 60S ribosomal protein L23a isoform X3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001014Ribosomal_L23/L25_CS
IPR005633Ribosomal_L23/L25_N
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR013025Ribosomal_L25/23
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022601T1MELO3C022601T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
scor
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
score: 1.1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 69..153
score: 1.1
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146
score: 2.73
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 21
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..139
score: 7.3
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 6..153
score: 4.6E
NoneNo IPR availablePANTHERPTHR11620:SF14SUBFAMILY NOT NAMEDcoord: 6..153
score: 4.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C022601Csa5G264270Cucumber (Chinese Long) v2cumeB344
MELO3C022601Cla016913Watermelon (97103) v1mewmB078
MELO3C022601ClCG11G000840Watermelon (Charleston Gray)mewcgB044
MELO3C022601Cla97C11G207200Watermelon (97103) v2mewmbB048
MELO3C022601BhiUN306G45Wax gourdmewgoB056
MELO3C022601CSPI05G11980Wild cucumber (PI 183967)cpimeB372
MELO3C022601CsGy5G009510Cucumber (Gy14) v2cgybmeB312
MELO3C022601Carg27080Silver-seed gourdcarmeB0731
MELO3C022601CsaV3_5G012620Cucumber (Chinese Long) v3cucmeB372
MELO3C022601CsaV3_5G012820Cucumber (Chinese Long) v3cucmeB379
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022601Cucurbita maxima (Rimu)cmameB650
MELO3C022601Cucurbita pepo (Zucchini)cpemeB372
MELO3C022601Bottle gourd (USVL1VR-Ls)lsimeB083
MELO3C022601Silver-seed gourdcarmeB0659