MELO3C021868.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021868.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr11 : 6208948 .. 6209580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACGAGCAGTACATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAACAACAAAGAGTTCAGAGTCGACGACGACAGCCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAATCACTTACTACAA

mRNA sequence

TAACGAGCAGTACATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAACAACAAAGAGTTCAGAGTCGACGACGACAGCCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAATCACTTACTACAA

Coding sequence (CDS)

ATGGAGAACATCCACTATATGTACAATGTCCCTATTGTACCTGCTCTAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACTGACACTGACACAAAGCGATCATAGTTACGTTAGTCCAGTAATGATGATTCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCGATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCGTCTTCATACATGAATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGGTACTCGAGCAATCAGATGAGCAACAGCAACAAAAGAATCAAGAGGAAATATAA

Protein sequence

MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYVSPVMMIPTFGTTYYDSGVGQSSDFGRVYYNSEAGRSSTDFGQQYYDLGSDPSSSYMNGHGRGRGEHNEYLYYEVPAAVLEQSDEQQQQKNQEEI

Homology

[Close]

BLAST of MELO3C021868.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 7.2e-25
Identity = 110/138 (79.71%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYXXXXXX 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+Y  XXXX
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSXXXX 136

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXQQYYDLGSDPSSSYMNGHGRGRGE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXX   YDLGSDPSS            
Sbjct: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXYDLGSDPSSXXXXXXXXXXXX 196

Query: 121 HNEYLYYEVPAAVLEQSD 139
           HNEYLYY+VPAAV EQSD
Sbjct: 197 HNEYLYYKVPAAVPEQSD 214

[Close]

BLAST of MELO3C021868.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 7.2e-25
Identity = 110/138 (79.71%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYXXXXXX 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+Y  XXXX
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSXXXX 116

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXQQYYDLGSDPSSSYMNGHGRGRGE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXX   YDLGSDPSS            
Sbjct: 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXYDLGSDPSSXXXXXXXXXXXX 176

Query: 121 HNEYLYYEVPAAVLEQSD 139
           HNEYLYY+VPAAV EQSD
Sbjct: 177 HNEYLYYKVPAAVPEQSD 194

[Close]

BLAST of MELO3C021868.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 189 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 229

[Close]

BLAST of MELO3C021868.2 vs. NCBI nr
Match: XP_008461671.1 (PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 182 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 222

[Close]

BLAST of MELO3C021868.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 110/138 (79.71%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYXXXXXX 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+Y  XXXX
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSXXXX 136

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXQQYYDLGSDPSSSYMNGHGRGRGE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXX   YDLGSDPSS            
Sbjct: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXYDLGSDPSSXXXXXXXXXXXX 196

Query: 121 HNEYLYYEVPAAVLEQSD 139
           HNEYLYY+VPAAV EQSD
Sbjct: 197 HNEYLYYKVPAAVPEQSD 214

[Close]

BLAST of MELO3C021868.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 110/138 (79.71%), Postives = 115/138 (83.33%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTLTLTQSDHSYXXXXXX 60
           MENIHYMY+VPIVPA VQRRRPLVQE DQLEEVDQH EEVPP+T T TQS+H+Y  XXXX
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSXXXX 116

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXQQYYDLGSDPSSSYMNGHGRGRGE 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXX   YDLGSDPSS            
Sbjct: 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXYDLGSDPSSXXXXXXXXXXXX 176

Query: 121 HNEYLYYEVPAAVLEQSD 139
           HNEYLYY+VPAAV EQSD
Sbjct: 177 HNEYLYYKVPAAVPEQSD 194

[Close]

BLAST of MELO3C021868.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 182 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 222

[Close]

BLAST of MELO3C021868.2 vs. TrEMBL
Match: tr|A0A1S3CF42|A0A1S3CF42_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1   MENIHYMYNVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVP 42
           MENIHYMYNV IVPALVQRRRPLVQE +QLEEV QHVEEVP
Sbjct: 189 MENIHYMYNVLIVPALVQRRRPLVQESNQLEEVVQHVEEVP 229

The following BLAST results are available for this feature:

BLAST of MELO3C021868.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449513.1	7.2e-25	79.71	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
XP_016900498.1	7.2e-25	79.71	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008461670.1	1.5e-09	90.24	PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo]	[more]
XP_008461671.1	1.5e-09	90.24	PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C021868.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C021868.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C021868.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLK4\|A0A1S3BLK4_CUCME	4.8e-25	79.71	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
tr\|A0A1S4DWZ9\|A0A1S4DWZ9_CUCME	4.8e-25	79.71	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A1S3CF98\|A0A1S3CF98_CUCME	9.7e-10	90.24	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1	[more]
tr\|A0A1S3CF42\|A0A1S3CF42_CUCME	9.7e-10	90.24	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021868.2.1	MELO3C021868.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021868.2	Watermelon (97103) v2	medwmbB119
MELO3C021868.2	Watermelon (97103) v2	medwmbB123
MELO3C021868.2	Cucumber (Gy14) v2	cgybmedB076
MELO3C021868.2	Cucumber (Gy14) v1	cgymedB526
MELO3C021868.2	Cucurbita maxima (Rimu)	cmamedB582
MELO3C021868.2	Cucurbita maxima (Rimu)	cmamedB614
MELO3C021868.2	Cucurbita moschata (Rifu)	cmomedB570
MELO3C021868.2	Cucurbita moschata (Rifu)	cmomedB604
MELO3C021868.2	Cucurbita pepo (Zucchini)	cpemedB295
MELO3C021868.2	Cucurbita pepo (Zucchini)	cpemedB796
MELO3C021868.2	Wild cucumber (PI 183967)	cpimedB084
MELO3C021868.2	Cucumber (Chinese Long) v2	cumedB084
MELO3C021868.2	Bottle gourd (USVL1VR-Ls)	lsimedB049
MELO3C021868.2	Watermelon (Charleston Gray)	medwcgB072
MELO3C021868.2	Silver-seed gourd	carmedB0805
MELO3C021868.2	Silver-seed gourd	carmedB1033
MELO3C021868.2	Silver-seed gourd	carmedB1035
MELO3C021868.2	Cucumber (Chinese Long) v3	cucmedB091