MELO3C021833 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021833
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCysteine--tRNA ligase
Locationchr11 : 6738045 .. 6738218 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGCGGATGATAGAGCATATGGAGTCCATCTCGAGCCTTACTATCACGGAGAGTAGTAAGTGCATCATGATAGTGACAGAGAAGGTGTCGCTCATGAGAAACTTCATCAAGATGTCTGATCCAATGAAGGCTGCTTACTGTAAGGTCCTCTTCTGCGGTGACCCTTAA

mRNA sequence

ATGGCGATGCGGATGATAGAGCATATGGAGTCCATCTCGAGCCTTACTATCACGGAGAGTAGTAAGTGCATCATGATAGTGACAGAGAAGGTGTCGCTCATGAGAAACTTCATCAAGATGTCTGATCCAATGAAGGCTGCTTACTGTAAGGTCCTCTTCTGCGGTGACCCTTAA

Coding sequence (CDS)

ATGGCGATGCGGATGATAGAGCATATGGAGTCCATCTCGAGCCTTACTATCACGGAGAGTAGTAAGTGCATCATGATAGTGACAGAGAAGGTGTCGCTCATGAGAAACTTCATCAAGATGTCTGATCCAATGAAGGCTGCTTACTGTAAGGTCCTCTTCTGCGGTGACCCTTAA

Protein sequence

MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAYCKVLFCGDP*
Homology
[Close]
BLAST of MELO3C021833 vs. TrEMBL
Match: Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.8e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 1  MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 49
          MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY
Sbjct: 1  MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

[Close]
BLAST of MELO3C021833 vs. NCBI nr
Match: gi|46095228|gb|AAS80151.1| (ACT11D09.5 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 5.5e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 1  MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 49
          MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY
Sbjct: 1  MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

The following BLAST results are available for this feature:
BLAST of MELO3C021833 vs. TrEMBL
Match NameE-valueIdentityDescription
Q6E437_CUCME3.8e-17100.00ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1[more]
BLAST of MELO3C021833 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|46095228|gb|AAS80151.1|5.5e-17100.00ACT11D09.5 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021833T1MELO3C021833T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021833Cucumber (Gy14) v1cgymeB524
MELO3C021833Cucurbita maxima (Rimu)cmameB493
MELO3C021833Cucurbita maxima (Rimu)cmameB534
MELO3C021833Cucurbita moschata (Rifu)cmomeB483
MELO3C021833Cucurbita moschata (Rifu)cmomeB524
MELO3C021833Wild cucumber (PI 183967)cpimeB096
MELO3C021833Cucumber (Chinese Long) v2cumeB086
MELO3C021833Watermelon (Charleston Gray)mewcgB076
MELO3C021833Watermelon (97103) v1mewmB087
MELO3C021833Cucurbita pepo (Zucchini)cpemeB672
MELO3C021833Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C021833Cucumber (Gy14) v2cgybmeB083
MELO3C021833Silver-seed gourdcarmeB0429
MELO3C021833Silver-seed gourdcarmeB1022
MELO3C021833Cucumber (Chinese Long) v3cucmeB103
MELO3C021833Watermelon (97103) v2mewmbB130
MELO3C021833Wax gourdmewgoB126