MELO3C021564 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021564
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ATP-dependent DNA helicase HFM1
Location	chr9 : 3817354 .. 3818455 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGATCCTGCAACTGGCAACGATGAAGATGAATGCAAAATCATCACTGAAAGAACTGTATTTGACCACATACGTGAGAAAGCCAAAAACTTTCCTATGTTGGCTGCATCAAAAAATAATGCTCATTCACCAGCAGCAGTGACATATAGTCTAACTAAAAATAAGCAGCCGCTAGAACTCCAGGTTGAAGCATTGGAAGAGAAACATAGAATTGAACTTTCCCCTCATGCCAAATTGGATTCATTTTCAGGATTCAGAGACGAAGTACAGAATAATGAATATGTGACTCAACAAAGCCACATCACCTCTGGACCACGTTTCATTGATGATGATAAAGGTATGTATCTATTTGCTTTTAGTCTTAGAATGGAAAATTGATATTAGAATCATTTTTTCTTAAAAATCTAATTAGTTTGTGTATTTTTTCGATTTATACTTGTTTCCTTTCAAATCTTTACAATAGTTTTCACGTTTGAATTTTTGATCATTATGTTTTATTATAGACATAACAAGTTTTTATTTTATAAGAAGAACTAACAATTGTTAATAATAAACAACAATAGGGGAATCTGGTGTCCAGAGAGAAGGAAGTAAAATAATTGTAACTGAGGAAACCATATTCGATCATATTAAAAGAAAGAGCAACAGTTTTCCAGTGATACACAAAAATTGTGAAAATGAAAGGACAGGAGGAGGAGGAGGAGGAGGAGATGGATACAGGAAATTGAATGAGGGTTGTTCAGTGGAATCCATGGGAATGGTGTGTTTTGATATATCGATGATGAAGGAAAACAAGAGGGCACGAGCAGGGCCAGAGAGCAGCAGTGATATGAATAGCAGCAAGTGGAAGAAGCAGCAGCAGAGTCCATCTGTAGGAAACAGAAAGAATTGGTGCTCCTTACAAACTGCCACGGAAACCAGTGAAGTCGATCCTTTTGTTGCGTTTAAGAGCGTTTTTTCATTCCTTTGACTCCTCCTTTCTCAATCTTAATATGTTTTTCTTTTTCTCTCTCGGAGGCTATGCCGTACTTTGGAATAATATAATTAGTCCCGGCTCGGCTGGCAGCACAAGGCAGCCGTCCAATAAAATTTGTCA

mRNA sequence

ATGGCAGCCGATCCTGCAACTGGCAACGATGAAGATGAATGCAAAATCATCACTGAAAGAACTGTATTTGACCACATACGTGAGAAAGCCAAAAACTTTCCTATGTTGGCTGCATCAAAAAATAATGCTCATTCACCAGCAGCAGTGACATATAGTCTAACTAAAAATAAGCAGCCGCTAGAACTCCAGGTTGAAGCATTGGAAGAGAAACATAGAATTGAACTTTCCCCTCATGCCAAATTGGATTCATTTTCAGGATTCAGAGACGAAGTACAGAATAATGAATATGTGACTCAACAAAGCCACATCACCTCTGGACCACGTTTCATTGATGATGATAAAGGGGAATCTGGTGTCCAGAGAGAAGGAAGTAAAATAATTGTAACTGAGGAAACCATATTCGATCATATTAAAAGAAAGAGCAACAGTTTTCCAGTGATACACAAAAATTGTGAAAATGAAAGGACAGGAGGAGGAGGAGGAGGAGGAGATGGATACAGGAAATTGAATGAGGGTTGTTCAGTGGAATCCATGGGAATGGTGTGTTTTGATATATCGATGATGAAGGAAAACAAGAGGGCACGAGCAGGGCCAGAGAGCAGCAGTGATATGAATAGCAGCAAGTGGAAGAAGCAGCAGCAGAGTCCATCTGTAGGAAACAGAAAGAATTGGTGCTCCTTACAAACTGCCACGGAAACCAGTGAAGTCGATCCTTTTGTTGCGTTTAAGAGCGTTTTTTCATTCCTTTGACTCCTCCTTTCTCAATCTTAATATGTTTTTCTTTTTCTCTCTCGGAGGCTATGCCGTACTTTGGAATAATATAATTAGTCCCGGCTCGGCTGGCAGCACAAGGCAGCCGTCCAATAAAATTTGTCA

Coding sequence (CDS)

ATGGCAGCCGATCCTGCAACTGGCAACGATGAAGATGAATGCAAAATCATCACTGAAAGAACTGTATTTGACCACATACGTGAGAAAGCCAAAAACTTTCCTATGTTGGCTGCATCAAAAAATAATGCTCATTCACCAGCAGCAGTGACATATAGTCTAACTAAAAATAAGCAGCCGCTAGAACTCCAGGTTGAAGCATTGGAAGAGAAACATAGAATTGAACTTTCCCCTCATGCCAAATTGGATTCATTTTCAGGATTCAGAGACGAAGTACAGAATAATGAATATGTGACTCAACAAAGCCACATCACCTCTGGACCACGTTTCATTGATGATGATAAAGGGGAATCTGGTGTCCAGAGAGAAGGAAGTAAAATAATTGTAACTGAGGAAACCATATTCGATCATATTAAAAGAAAGAGCAACAGTTTTCCAGTGATACACAAAAATTGTGAAAATGAAAGGACAGGAGGAGGAGGAGGAGGAGGAGATGGATACAGGAAATTGAATGAGGGTTGTTCAGTGGAATCCATGGGAATGGTGTGTTTTGATATATCGATGATGAAGGAAAACAAGAGGGCACGAGCAGGGCCAGAGAGCAGCAGTGATATGAATAGCAGCAAGTGGAAGAAGCAGCAGCAGAGTCCATCTGTAGGAAACAGAAAGAATTGGTGCTCCTTACAAACTGCCACGGAAACCAGTGAAGTCGATCCTTTTGTTGCGTTTAAGAGCGTTTTTTCATTCCTTTGA

Protein sequence

MAADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLELQVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQREGSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVCFDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAFKSVFSFL*

Homology

[Close]

BLAST of MELO3C021564 vs. Swiss-Prot
Match: MER3_ARATH (DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana GN=MER3 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-11
Identity = 71/248 (28.63%), Postives = 112/248 (45.16%), Query Frame = 1


Query: 4    DPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLELQ 63
            +P    +ED+C II E TVFDHIREKAK FP L  +  N  S  A   S+ K K      
Sbjct: 916  EPYVTMEEDDCVIINEHTVFDHIREKAKCFPSL--NPLNPTSSPASGKSILKRK------ 975

Query: 64   VEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQREG 123
              +L E +  EL P  + DS     D   N + + Q +   + P +       S  ++  
Sbjct: 976  --SLVENNSPELDPLFQYDSVF---DLPTNTKDIKQSAQQITSPGY------ASFAEKTE 1035

Query: 124  SKIIVTEETIFDHIKRKSNSFPVI-HKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 183
            ++   ++ETIF++I+++S + P +     EN  T              EG + E      
Sbjct: 1036 TERPFSDETIFNYIRKRSKNSPALATSKIENPITISS----------QEGRNAEISPYRT 1095

Query: 184  FDISMMKENKRARAGPESSSDMNSSKWKKQQQS-PSVGNRKNWCSLQTATETSEVDPFVA 243
            + + +    K  R   ++ S++ S      ++S  S+   K +CS   A +++  D F+ 
Sbjct: 1096 YGLLVSPATKIPRITSDAPSEILSFDISMVKRSDTSLEQTKGFCS-TLAGKSNVSDSFLG 1133

Query: 244  FKSVFSFL 250
            FKS+FSFL
Sbjct: 1156 FKSIFSFL 1133

HSP 2 Score: 35.8 bits (81), Expect = 8.2e-01
Identity = 35/137 (25.55%), Postives = 54/137 (39.42%), Query Frame = 1


Query: 45  SPAAVTYSLTKNKQPLELQVEA---LEEKHRIELSPHAKLDSFSG----FRDEVQNNEY- 104
           SP +VT  L +  Q  ++ V+A    EE   I+L     L   +     ++ E +  +Y 
Sbjct: 813 SPYSVTVLLERPHQQTKVTVKADLIFEEYIGIDLHETLLLKKANNNKVNYKSENRMPQYY 872

Query: 105 --------VTQQSHITSGP-------------RFIDDDKGESG----VQREGSKIIVTEE 149
                       + +TSGP             + IDDD  E         E   +I+ E 
Sbjct: 873 PPMASACIADDDNPVTSGPSNRKDKKDDMPSFKLIDDDSEEEKEPYVTMEEDDCVIINEH 932

[Close]

BLAST of MELO3C021564 vs. TrEMBL
Match: A0A0A0KSF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523170 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.5e-123
Identity = 226/247 (91.50%), Postives = 234/247 (94.74%), Query Frame = 1


Query: 3    ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
            ADPATG DEDECKIITERTVFDHIREKAK+FPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 876  ADPATGKDEDECKIITERTVFDHIREKAKSFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 935

Query: 63   QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
            QVEALEEK RIELSPHAK+DSFSGFRDEV+NNEYVT QSHITSGPRFIDDDKGESGVQRE
Sbjct: 936  QVEALEEKQRIELSPHAKVDSFSGFRDEVRNNEYVTLQSHITSGPRFIDDDKGESGVQRE 995

Query: 123  GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
            GSKIIVTEETIFDHIKRKSN+FPVIHK+ ENERT   G GGD YRK+NEGCSVESMGMVC
Sbjct: 996  GSKIIVTEETIFDHIKRKSNNFPVIHKSSENERT---GEGGDRYRKMNEGCSVESMGMVC 1055

Query: 183  FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
            FDISMMKENKRARAGPESS++MNSSKWKKQQQSPSV NRK W SLQTATET EVDPFVAF
Sbjct: 1056 FDISMMKENKRARAGPESSTNMNSSKWKKQQQSPSVENRKKWRSLQTATETREVDPFVAF 1115

Query: 243  KSVFSFL 250
            KSVFSFL
Sbjct: 1116 KSVFSFL 1119

[Close]

BLAST of MELO3C021564 vs. TrEMBL
Match: A0A0B2R0P1_GLYSO (Putative ATP-dependent DNA helicase HFM1 OS=Glycine soja GN=glysoja_018648 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 90/280 (32.14%), Postives = 137/280 (48.93%), Query Frame = 1


Query: 6    ATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPA---AVTYSLTKNKQP-LE 65
            A G  EDECK ITE+TVFDHIREKAKNF +L+A  +N H P+    ++ +  + K+P   
Sbjct: 948  AFGVVEDECKSITEKTVFDHIREKAKNFSLLSA-YDNIHFPSLEVLLSRNHAREKRPDHR 1007

Query: 66   LQVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQR 125
             +V  L+++ R E+     ++     R   Q++       H T+G   I D    +GV  
Sbjct: 1008 HEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVD----TGVFL 1067

Query: 126  EGSKIIV----TEETIFDHIKRKSNSFPVIHK-NCENE-----------RTGGGGGGGDG 185
               + I     TEET+FDHI+RKS  FP I+K NC                       D 
Sbjct: 1068 PEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDA 1127

Query: 186  YRKLNEGCSVE------------SMGMVCFDISMMKENKRAR---AGPESSSDMN-SSKW 245
            +    E  S+E            +  +  +  S+ +E KR+    + PESS     +S+ 
Sbjct: 1128 FGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRD 1187

Query: 246  KKQQQSPSVGNRKNWCSLQTATETSEVDPFVAFKSVFSFL 250
             K+++  S   R+  CSL++ ++  E++ F+ FKSVFSFL
Sbjct: 1188 SKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL 1222

[Close]

BLAST of MELO3C021564 vs. TrEMBL
Match: K7MFP3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 90/280 (32.14%), Postives = 137/280 (48.93%), Query Frame = 1


Query: 6    ATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPA---AVTYSLTKNKQP-LE 65
            A G  EDECK ITE+TVFDHIREKAKNF +L+A  +N H P+    ++ +  + K+P   
Sbjct: 921  AFGVVEDECKSITEKTVFDHIREKAKNFSLLSA-YDNIHFPSLEVLLSRNHAREKRPDHR 980

Query: 66   LQVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQR 125
             +V  L+++ R E+     ++     R   Q++       H T+G   I D    +GV  
Sbjct: 981  HEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVD----TGVFL 1040

Query: 126  EGSKIIV----TEETIFDHIKRKSNSFPVIHK-NCENE-----------RTGGGGGGGDG 185
               + I     TEET+FDHI+RKS  FP I+K NC                       D 
Sbjct: 1041 PEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDA 1100

Query: 186  YRKLNEGCSVE------------SMGMVCFDISMMKENKRAR---AGPESSSDMN-SSKW 245
            +    E  S+E            +  +  +  S+ +E KR+    + PESS     +S+ 
Sbjct: 1101 FGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRD 1160

Query: 246  KKQQQSPSVGNRKNWCSLQTATETSEVDPFVAFKSVFSFL 250
             K+++  S   R+  CSL++ ++  E++ F+ FKSVFSFL
Sbjct: 1161 SKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL 1195

[Close]

BLAST of MELO3C021564 vs. TrEMBL
Match: A0A0R0FWV1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G072300 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 90/280 (32.14%), Postives = 137/280 (48.93%), Query Frame = 1


Query: 6    ATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPA---AVTYSLTKNKQP-LE 65
            A G  EDECK ITE+TVFDHIREKAKNF +L+A  +N H P+    ++ +  + K+P   
Sbjct: 916  AFGVVEDECKSITEKTVFDHIREKAKNFSLLSA-YDNIHFPSLEVLLSRNHAREKRPDHR 975

Query: 66   LQVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQR 125
             +V  L+++ R E+     ++     R   Q++       H T+G   I D    +GV  
Sbjct: 976  HEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVD----TGVFL 1035

Query: 126  EGSKIIV----TEETIFDHIKRKSNSFPVIHK-NCENE-----------RTGGGGGGGDG 185
               + I     TEET+FDHI+RKS  FP I+K NC                       D 
Sbjct: 1036 PEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDA 1095

Query: 186  YRKLNEGCSVE------------SMGMVCFDISMMKENKRAR---AGPESSSDMN-SSKW 245
            +    E  S+E            +  +  +  S+ +E KR+    + PESS     +S+ 
Sbjct: 1096 FGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRD 1155

Query: 246  KKQQQSPSVGNRKNWCSLQTATETSEVDPFVAFKSVFSFL 250
             K+++  S   R+  CSL++ ++  E++ F+ FKSVFSFL
Sbjct: 1156 SKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL 1190

[Close]

BLAST of MELO3C021564 vs. TrEMBL
Match: A0A061EDH0_THECC (ATP binding,ATP-dependent helicases,DNA helicases OS=Theobroma cacao GN=TCM_016933 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-18
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 1


Query: 4    DPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLELQ 63
            +PA G ++D+C+I    T+FDHIREKAK+FP+L  S N+A+ P +    LT+ +     +
Sbjct: 940  EPAAGTEKDDCEITIGHTIFDHIREKAKSFPLLTPS-NSAYPPTSGGLILTRKRS----R 999

Query: 64   VEALEEKHRIELSPHAKLDSFSGFRDEVQN----NEYVTQQSHITSGPRFIDDDKGESGV 123
             + LEE  R +   H  LD     R+  QN    N Y+T++ HI SG     D   ESG 
Sbjct: 1000 DQPLEEMERSKTHQHIVLDPSPESREPEQNVHGINSYMTRKYHINSGSSVTIDLTDESGD 1059

Query: 124  QREGSKII----VTEETIFDHIKRKSNSFPVIHKNCENE 155
                 +++    +TEETIFDHI++KS +FPV++    NE
Sbjct: 1060 LPSEPEVLSFKTLTEETIFDHIRKKSRNFPVLNTLNPNE 1093

[Close]

BLAST of MELO3C021564 vs. TAIR10
Match: AT3G27730.1 (AT3G27730.1 ATP binding;ATP-dependent helicases;DNA helicases)

HSP 1 Score: 71.6 bits (174), Expect = 7.6e-13
Identity = 71/248 (28.63%), Postives = 112/248 (45.16%), Query Frame = 1


Query: 4    DPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLELQ 63
            +P    +ED+C II E TVFDHIREKAK FP L  +  N  S  A   S+ K K      
Sbjct: 916  EPYVTMEEDDCVIINEHTVFDHIREKAKCFPSL--NPLNPTSSPASGKSILKRK------ 975

Query: 64   VEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQREG 123
              +L E +  EL P  + DS     D   N + + Q +   + P +       S  ++  
Sbjct: 976  --SLVENNSPELDPLFQYDSVF---DLPTNTKDIKQSAQQITSPGY------ASFAEKTE 1035

Query: 124  SKIIVTEETIFDHIKRKSNSFPVI-HKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 183
            ++   ++ETIF++I+++S + P +     EN  T              EG + E      
Sbjct: 1036 TERPFSDETIFNYIRKRSKNSPALATSKIENPITISS----------QEGRNAEISPYRT 1095

Query: 184  FDISMMKENKRARAGPESSSDMNSSKWKKQQQS-PSVGNRKNWCSLQTATETSEVDPFVA 243
            + + +    K  R   ++ S++ S      ++S  S+   K +CS   A +++  D F+ 
Sbjct: 1096 YGLLVSPATKIPRITSDAPSEILSFDISMVKRSDTSLEQTKGFCS-TLAGKSNVSDSFLG 1133

Query: 244  FKSVFSFL 250
            FKS+FSFL
Sbjct: 1156 FKSIFSFL 1133

HSP 2 Score: 35.8 bits (81), Expect = 4.6e-02
Identity = 35/137 (25.55%), Postives = 54/137 (39.42%), Query Frame = 1


Query: 45  SPAAVTYSLTKNKQPLELQVEA---LEEKHRIELSPHAKLDSFSG----FRDEVQNNEY- 104
           SP +VT  L +  Q  ++ V+A    EE   I+L     L   +     ++ E +  +Y 
Sbjct: 813 SPYSVTVLLERPHQQTKVTVKADLIFEEYIGIDLHETLLLKKANNNKVNYKSENRMPQYY 872

Query: 105 --------VTQQSHITSGP-------------RFIDDDKGESG----VQREGSKIIVTEE 149
                       + +TSGP             + IDDD  E         E   +I+ E 
Sbjct: 873 PPMASACIADDDNPVTSGPSNRKDKKDDMPSFKLIDDDSEEEKEPYVTMEEDDCVIINEH 932

[Close]

BLAST of MELO3C021564 vs. NCBI nr
Match: gi|659117787|ref|XP_008458787.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X2 [Cucumis melo])

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 3   ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
           ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 733 ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 792

Query: 63  QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
           QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE
Sbjct: 793 QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 852

Query: 123 GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
           GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC
Sbjct: 853 GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 912

Query: 183 FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
           FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF
Sbjct: 913 FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 972

Query: 243 KSVFSFL 250
           KSVFSFL
Sbjct: 973 KSVFSFL 979

[Close]

BLAST of MELO3C021564 vs. NCBI nr
Match: gi|659117791|ref|XP_008458789.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X3 [Cucumis melo])

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 3   ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
           ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 731 ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 790

Query: 63  QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
           QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE
Sbjct: 791 QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 850

Query: 123 GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
           GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC
Sbjct: 851 GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 910

Query: 183 FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
           FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF
Sbjct: 911 FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 970

Query: 243 KSVFSFL 250
           KSVFSFL
Sbjct: 971 KSVFSFL 977

[Close]

BLAST of MELO3C021564 vs. NCBI nr
Match: gi|659117785|ref|XP_008458786.1| (PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X1 [Cucumis melo])

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1


Query: 3    ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
            ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 918  ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 977

Query: 63   QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
            QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE
Sbjct: 978  QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 1037

Query: 123  GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
            GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC
Sbjct: 1038 GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 1097

Query: 183  FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
            FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF
Sbjct: 1098 FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 1157

Query: 243  KSVFSFL 250
            KSVFSFL
Sbjct: 1158 KSVFSFL 1164

[Close]

BLAST of MELO3C021564 vs. NCBI nr
Match: gi|778703688|ref|XP_011655409.1| (PREDICTED: ATP-dependent DNA helicase MER3 homolog [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 2.2e-123
Identity = 226/247 (91.50%), Postives = 234/247 (94.74%), Query Frame = 1


Query: 3    ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
            ADPATG DEDECKIITERTVFDHIREKAK+FPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 918  ADPATGKDEDECKIITERTVFDHIREKAKSFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 977

Query: 63   QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
            QVEALEEK RIELSPHAK+DSFSGFRDEV+NNEYVT QSHITSGPRFIDDDKGESGVQRE
Sbjct: 978  QVEALEEKQRIELSPHAKVDSFSGFRDEVRNNEYVTLQSHITSGPRFIDDDKGESGVQRE 1037

Query: 123  GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
            GSKIIVTEETIFDHIKRKSN+FPVIHK+ ENERT   G GGD YRK+NEGCSVESMGMVC
Sbjct: 1038 GSKIIVTEETIFDHIKRKSNNFPVIHKSSENERT---GEGGDRYRKMNEGCSVESMGMVC 1097

Query: 183  FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
            FDISMMKENKRARAGPESS++MNSSKWKKQQQSPSV NRK W SLQTATET EVDPFVAF
Sbjct: 1098 FDISMMKENKRARAGPESSTNMNSSKWKKQQQSPSVENRKKWRSLQTATETREVDPFVAF 1157

Query: 243  KSVFSFL 250
            KSVFSFL
Sbjct: 1158 KSVFSFL 1161

[Close]

BLAST of MELO3C021564 vs. NCBI nr
Match: gi|700196195|gb|KGN51372.1| (hypothetical protein Csa_5G523170 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 2.2e-123
Identity = 226/247 (91.50%), Postives = 234/247 (94.74%), Query Frame = 1


Query: 3    ADPATGNDEDECKIITERTVFDHIREKAKNFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 62
            ADPATG DEDECKIITERTVFDHIREKAK+FPMLAASKNNAHSPAAVTYSLTKNKQPLEL
Sbjct: 876  ADPATGKDEDECKIITERTVFDHIREKAKSFPMLAASKNNAHSPAAVTYSLTKNKQPLEL 935

Query: 63   QVEALEEKHRIELSPHAKLDSFSGFRDEVQNNEYVTQQSHITSGPRFIDDDKGESGVQRE 122
            QVEALEEK RIELSPHAK+DSFSGFRDEV+NNEYVT QSHITSGPRFIDDDKGESGVQRE
Sbjct: 936  QVEALEEKQRIELSPHAKVDSFSGFRDEVRNNEYVTLQSHITSGPRFIDDDKGESGVQRE 995

Query: 123  GSKIIVTEETIFDHIKRKSNSFPVIHKNCENERTGGGGGGGDGYRKLNEGCSVESMGMVC 182
            GSKIIVTEETIFDHIKRKSN+FPVIHK+ ENERT   G GGD YRK+NEGCSVESMGMVC
Sbjct: 996  GSKIIVTEETIFDHIKRKSNNFPVIHKSSENERT---GEGGDRYRKMNEGCSVESMGMVC 1055

Query: 183  FDISMMKENKRARAGPESSSDMNSSKWKKQQQSPSVGNRKNWCSLQTATETSEVDPFVAF 242
            FDISMMKENKRARAGPESS++MNSSKWKKQQQSPSV NRK W SLQTATET EVDPFVAF
Sbjct: 1056 FDISMMKENKRARAGPESSTNMNSSKWKKQQQSPSVENRKKWRSLQTATETREVDPFVAF 1115

Query: 243  KSVFSFL 250
            KSVFSFL
Sbjct: 1116 KSVFSFL 1119

The following BLAST results are available for this feature:

BLAST of MELO3C021564 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MER3_ARATH	1.3e-11	28.63	DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana GN=MER3 PE=2 ...	[more]

BLAST of MELO3C021564 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSF5_CUCSA	1.5e-123	91.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G523170 PE=4 SV=1	[more]
A0A0B2R0P1_GLYSO	4.6e-19	32.14	Putative ATP-dependent DNA helicase HFM1 OS=Glycine soja GN=glysoja_018648 PE=4 ...	[more]
K7MFP3_SOYBN	4.6e-19	32.14	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0FWV1_SOYBN	4.6e-19	32.14	Uncharacterized protein OS=Glycine max GN=GLYMA_16G072300 PE=4 SV=1	[more]
A0A061EDH0_THECC	1.0e-18	38.99	ATP binding,ATP-dependent helicases,DNA helicases OS=Theobroma cacao GN=TCM_0169...	[more]

BLAST of MELO3C021564 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27730.1	7.6e-13	28.63	ATP binding;ATP-dependent helicases;DNA helicases	[more]

BLAST of MELO3C021564 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117787\|ref\|XP_008458787.1\|	1.3e-139	100.00	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X2 [Cucumis melo]	[more]
gi\|659117791\|ref\|XP_008458789.1\|	1.3e-139	100.00	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X3 [Cucumis melo]	[more]
gi\|659117785\|ref\|XP_008458786.1\|	1.3e-139	100.00	PREDICTED: probable ATP-dependent DNA helicase HFM1 isoform X1 [Cucumis melo]	[more]
gi\|778703688\|ref\|XP_011655409.1\|	2.2e-123	91.50	PREDICTED: ATP-dependent DNA helicase MER3 homolog [Cucumis sativus]	[more]
gi\|700196195\|gb\|KGN51372.1\|	2.2e-123	91.50	hypothetical protein Csa_5G523170 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0051026	chiasma assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU67008	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021564T1	MELO3C021564T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU67008	MU67008	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C021564	Csa5G523170	Cucumber (Chinese Long) v2	cumeB360
MELO3C021564	Cla010419	Watermelon (97103) v1	mewmB003
MELO3C021564	ClCG09G019150	Watermelon (Charleston Gray)	mewcgB002
MELO3C021564	Cla97C09G180600	Watermelon (97103) v2	mewmbB038
MELO3C021564	Bhi06G000446	Wax gourd	mewgoB022
MELO3C021564	CSPI05G18310	Wild cucumber (PI 183967)	cpimeB350
MELO3C021564	Cucsa.011370	Cucumber (Gy14) v1	cgymeB336
MELO3C021564	CmaCh04G026930	Cucurbita maxima (Rimu)	cmameB634
MELO3C021564	CmoCh04G028240	Cucurbita moschata (Rifu)	cmomeB624
MELO3C021564	Lsi02G015800	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C021564	CsGy5G017950	Cucumber (Gy14) v2	cgybmeB300
MELO3C021564	Carg04449	Silver-seed gourd	carmeB0682
MELO3C021564	CsaV3_5G027240	Cucumber (Chinese Long) v3	cucmeB359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021564	Silver-seed gourd	carmeB0260
MELO3C021564	Silver-seed gourd	carmeB0370
MELO3C021564	Silver-seed gourd	carmeB0441
MELO3C021564	Cucumber (Chinese Long) v3	cucmeB000
MELO3C021564	Cucumber (Chinese Long) v3	cucmeB164
MELO3C021564	Watermelon (97103) v2	mewmbB013
MELO3C021564	Wax gourd	mewgoB002
MELO3C021564	Wax gourd	mewgoB044
MELO3C021564	Melon (DHL92) v3.5.1	memeB012
MELO3C021564	Melon (DHL92) v3.5.1	memeB013
MELO3C021564	Cucumber (Gy14) v1	cgymeB114
MELO3C021564	Cucumber (Gy14) v1	cgymeB549
MELO3C021564	Cucurbita maxima (Rimu)	cmameB081
MELO3C021564	Cucurbita maxima (Rimu)	cmameB212
MELO3C021564	Cucurbita maxima (Rimu)	cmameB251
MELO3C021564	Cucurbita moschata (Rifu)	cmomeB075
MELO3C021564	Cucurbita moschata (Rifu)	cmomeB196
MELO3C021564	Cucurbita moschata (Rifu)	cmomeB239
MELO3C021564	Wild cucumber (PI 183967)	cpimeB000
MELO3C021564	Wild cucumber (PI 183967)	cpimeB162
MELO3C021564	Cucumber (Chinese Long) v2	cumeB005
MELO3C021564	Cucumber (Chinese Long) v2	cumeB172
MELO3C021564	Watermelon (Charleston Gray)	mewcgB006
MELO3C021564	Watermelon (Charleston Gray)	mewcgB017
MELO3C021564	Watermelon (97103) v1	mewmB007
MELO3C021564	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C021564	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C021564	Cucurbita pepo (Zucchini)	cpemeB467
MELO3C021564	Cucurbita pepo (Zucchini)	cpemeB550
MELO3C021564	Cucurbita pepo (Zucchini)	cpemeB594
MELO3C021564	Bottle gourd (USVL1VR-Ls)	lsimeB163
MELO3C021564	Bottle gourd (USVL1VR-Ls)	lsimeB234
MELO3C021564	Cucumber (Gy14) v2	cgybmeB001
MELO3C021564	Cucumber (Gy14) v2	cgybmeB140