MELO3C020993 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020993
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr1 : 23855414 .. 23855866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

mRNA sequence

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Coding sequence (CDS)

ATGCCCTTTGGGTTGACTAATGCCCCTGCAGCCTTCATGAACTTGATGAATCAGGTGTTTCATCCACACTTAGATCAATTTGTTATTGTGTTCATAGATGACATATTGGTTTATTCTGGGAGTAAAGAAAAGCATGCTGAACACCTCAGAATAGGGTTACAGACACTGCGACACCGAGAATTGTATGCTAAATTCAGTAAGTGCGAATTCTGGCTGGATTGGATAGTATTTTTGGTTCATGTGGTTTCAGCAGAAGGCATTTGTGTCGATCCTCGGAAAACTAAAGCAGTAGATAAGTGGGAAAGACCTACCTTCATCACTAAGATCCGAAGTTTTCTTGGTTTAGCGGGGTATTATTGCCGATTTGTAGAAGGGTTTTCAAAATTGGCACTTCCCTTGACCAACCTAACAAGGAAGAATGTGAAGTTTGAATGGACAGATGCTTGTGAATAG

Protein sequence

MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTDACE*

Homology

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BLAST of MELO3C020993 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.2e-27
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGL NAPA F   MN +  P L++  +V++DDI+V+S S ++H + L +  + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L  +  KCEF      FL HV++ +GI  +P K +A+ K+  PT   +I++FLGL GYY 
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTD 148
           +F+  F+ +A P+T   +KN+K + T+
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTN 480

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BLAST of MELO3C020993 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.4e-25
Identity = 52/138 (37.68%), Postives = 85/138 (61.59%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           +PFGL NAPA F  +++ +   H+ +   V+IDDI+V+S   + H ++LR+ L +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L     K  F    + FL ++V+A+GI  DP+K +A+ +   PT + +++ FLG+  YY 
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEGFSKLALPLTNLTR 139
           +F++ ++K+A PLTNLTR
Sbjct: 370 KFIQDYAKVAKPLTNLTR 387

[Close]

BLAST of MELO3C020993 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.4e-24
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGL NAPA F   MN +  P L++  +V++DDI+++S S  +H   +++    L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L  +  KCEF      FL H+V+ +GI  +P K KA+  +  PT   +IR+FLGL GYY 
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEGFSKLALPLTNLTRKNVKFE 145
           +F+  ++ +A P+T+  +K  K +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKID 476

[Close]

BLAST of MELO3C020993 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-20
Identity = 47/146 (32.19%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG   Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of MELO3C020993 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-20
Identity = 47/146 (32.19%), Postives = 82/146 (56.16%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S S+ +H +H++  LQ L++  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           L    +KCEF    + F+ + +S +G          V +W++P    ++R FLG   Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWT 147
           +F+   S+L  PL NL +K+V+++WT
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWT 679

[Close]

BLAST of MELO3C020993 vs. TrEMBL
Match: A0A061E6T4_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.9e-57
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFHP+LD+FVIVFIDDILVYS   ++HA HLRI LQTLR R+
Sbjct: 699 MPFGLTNAPAAFMDLMNRVFHPYLDKFVIVFIDDILVYSRDNDEHAAHLRIVLQTLRERQ 758

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL H+VS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 759 LYAKFSKCEFWLQEVVFLGHIVSRTGIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYR 818

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VKF W D CE
Sbjct: 819 RFVQGFSLVAAPLTRLTRKGVKFVWDDVCE 848

[Close]

BLAST of MELO3C020993 vs. TrEMBL
Match: A0A061E507_THECC (Retrotransposon protein OS=Theobroma cacao GN=TCM_009505 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.7e-56
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++HA HLRI LQTLR R+
Sbjct: 205 MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLRIVLQTLRERQ 264

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 265 LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 324

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LT K VK+EW D CE
Sbjct: 325 RFVQGFSLIAAPLTRLTSKGVKYEWDDVCE 354

[Close]

BLAST of MELO3C020993 vs. TrEMBL
Match: A0A061FWW2_THECC (RNA-directed DNA polymerase (Reverse transcriptase) OS=Theobroma cacao GN=TCM_012877 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-56
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++HA HL I LQTLR R+
Sbjct: 39  MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLLIVLQTLRERQ 98

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 99  LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 158

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VK+EW D CE
Sbjct: 159 RFVQGFSLIAAPLTRLTRKGVKYEWDDVCE 188

[Close]

BLAST of MELO3C020993 vs. TrEMBL
Match: A0A061GPE8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-56
Identity = 107/150 (71.33%), Postives = 125/150 (83.33%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN VFHP+LD+FVIVFIDDILVYS + ++HA HLRI LQTLR R+
Sbjct: 713 MPFGLTNAPAVFMDLMNMVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLRIVLQTLRERQ 772

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVV   GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 773 LYAKFSKCEFWLKEVVFLGHVVFGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 832

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VK+EW D CE
Sbjct: 833 RFVQGFSLIAAPLTRLTRKGVKYEWDDVCE 862

[Close]

BLAST of MELO3C020993 vs. TrEMBL
Match: A0A061DME7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003025 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.4e-56
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++H  HL I LQTLR R+
Sbjct: 220 MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHVAHLHIVLQTLRERQ 279

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 280 LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 339

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +  PLT LTRK VKFEW D CE
Sbjct: 340 RFVQGFSMIVAPLTRLTRKGVKFEWDDVCE 369

[Close]

BLAST of MELO3C020993 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-16
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1


Query: 48  HLRIGLQTLRHRELYAKFSKCEFWLDWIVFLVH--VVSAEGICVDPRKTKAVDKWERPTF 107
           HL + LQ     + YA   KC F    I +L H  ++S EG+  DP K +A+  W  P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 ITKIRSFLGLAGYYCRFVEGFSKLALPLTNLTRKNVKFEWTD 148
            T++R FLGL GYY RFV+ + K+  PLT L +KN   +WT+
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTE 103

[Close]

BLAST of MELO3C020993 vs. NCBI nr
Match: gi|590693137|ref|XP_007044250.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 108/150 (72.00%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPAAFM+LMN+VFHP+LD+FVIVFIDDILVYS   ++HA HLRI LQTLR R+
Sbjct: 699 MPFGLTNAPAAFMDLMNRVFHPYLDKFVIVFIDDILVYSRDNDEHAAHLRIVLQTLRERQ 758

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL H+VS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 759 LYAKFSKCEFWLQEVVFLGHIVSRTGIYVDPKKVEAILQWEQPKTVTEIRSFLGLAGYYR 818

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VKF W D CE
Sbjct: 819 RFVQGFSLVAAPLTRLTRKGVKFVWDDVCE 848

[Close]

BLAST of MELO3C020993 vs. NCBI nr
Match: gi|590693080|ref|XP_007044234.1| (Retrotransposon protein [Theobroma cacao])

HSP 1 Score: 225.7 bits (574), Expect = 5.4e-56
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++HA HLRI LQTLR R+
Sbjct: 205 MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLRIVLQTLRERQ 264

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 265 LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 324

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LT K VK+EW D CE
Sbjct: 325 RFVQGFSLIAAPLTRLTSKGVKYEWDDVCE 354

[Close]

BLAST of MELO3C020993 vs. NCBI nr
Match: gi|590665874|ref|XP_007036856.1| (RNA-directed DNA polymerase (Reverse transcriptase) [Theobroma cacao])

HSP 1 Score: 225.3 bits (573), Expect = 7.0e-56
Identity = 107/150 (71.33%), Postives = 126/150 (84.00%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++HA HL I LQTLR R+
Sbjct: 39  MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLLIVLQTLRERQ 98

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 99  LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 158

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VK+EW D CE
Sbjct: 159 RFVQGFSLIAAPLTRLTRKGVKYEWDDVCE 188

[Close]

BLAST of MELO3C020993 vs. NCBI nr
Match: gi|590580431|ref|XP_007014066.1| (Uncharacterized protein TCM_038736 [Theobroma cacao])

HSP 1 Score: 225.3 bits (573), Expect = 7.0e-56
Identity = 107/150 (71.33%), Postives = 125/150 (83.33%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN VFHP+LD+FVIVFIDDILVYS + ++HA HLRI LQTLR R+
Sbjct: 713 MPFGLTNAPAVFMDLMNMVFHPYLDKFVIVFIDDILVYSKNDDEHAAHLRIVLQTLRERQ 772

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVV   GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 773 LYAKFSKCEFWLKEVVFLGHVVFGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 832

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +A PLT LTRK VK+EW D CE
Sbjct: 833 RFVQGFSLIAAPLTRLTRKGVKYEWDDVCE 862

[Close]

BLAST of MELO3C020993 vs. NCBI nr
Match: gi|590714158|ref|XP_007049837.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 1


Query: 1   MPFGLTNAPAAFMNLMNQVFHPHLDQFVIVFIDDILVYSGSKEKHAEHLRIGLQTLRHRE 60
           MPFGLTNAPA FM+LMN+VFHP+LD+FVIVFIDDILVYS + ++H  HL I LQTLR R+
Sbjct: 220 MPFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHVAHLHIVLQTLRERQ 279

Query: 61  LYAKFSKCEFWLDWIVFLVHVVSAEGICVDPRKTKAVDKWERPTFITKIRSFLGLAGYYC 120
           LYAKFSKCEFWL  +VFL HVVS  GI VDP+K +A+ +WE+P  +T+IRSFLGLAGYY 
Sbjct: 280 LYAKFSKCEFWLKEVVFLGHVVSGAGIYVDPKKIEAILQWEQPRTVTEIRSFLGLAGYYR 339

Query: 121 RFVEGFSKLALPLTNLTRKNVKFEWTDACE 151
           RFV+GFS +  PLT LTRK VKFEW D CE
Sbjct: 340 RFVQGFSMIVAPLTRLTRKGVKFEWDDVCE 369

The following BLAST results are available for this feature:

BLAST of MELO3C020993 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL3_DROME	5.2e-27	39.46	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POL5_DROME	8.4e-25	37.68	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
POL2_DROME	5.4e-24	37.50	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
TF212_SCHPO	6.2e-20	32.19	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	6.2e-20	32.19	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO3C020993 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061E6T4_THECC	9.9e-57	72.00	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV...	[more]
A0A061E507_THECC	3.7e-56	71.33	Retrotransposon protein OS=Theobroma cacao GN=TCM_009505 PE=4 SV=1	[more]
A0A061FWW2_THECC	4.9e-56	71.33	RNA-directed DNA polymerase (Reverse transcriptase) OS=Theobroma cacao GN=TCM_01...	[more]
A0A061GPE8_THECC	4.9e-56	71.33	Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1	[more]
A0A061DME7_THECC	8.4e-56	70.67	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003025 PE=4 SV...	[more]

BLAST of MELO3C020993 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	1.5e-16	41.18	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of MELO3C020993 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590693137\|ref\|XP_007044250.1\|	1.4e-56	72.00	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590693080\|ref\|XP_007044234.1\|	5.4e-56	71.33	Retrotransposon protein [Theobroma cacao]	[more]
gi\|590665874\|ref\|XP_007036856.1\|	7.0e-56	71.33	RNA-directed DNA polymerase (Reverse transcriptase) [Theobroma cacao]	[more]
gi\|590580431\|ref\|XP_007014066.1\|	7.0e-56	71.33	Uncharacterized protein TCM_038736 [Theobroma cacao]	[more]
gi\|590714158\|ref\|XP_007049837.1\|	1.2e-55	70.67	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020993T1	MELO3C020993T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..73 score: 1.3
IPR000477	Reverse transcriptase domain	PROFILE	PS50878	RT_POL	coord: 1..117 score: 9
None	No IPR available	GENE3D	G3DSA:3.30.70.270		coord: 1..70 score: 1.
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..150 score: 1.3
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 1..150 score: 1.3
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 1..150 score: 4.23

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020993	Watermelon (97103) v2	mewmbB219
MELO3C020993	Wax gourd	mewgoB262
MELO3C020993	Cucumber (Gy14) v1	cgymeB082
MELO3C020993	Cucurbita moschata (Rifu)	cmomeB322
MELO3C020993	Wild cucumber (PI 183967)	cpimeB549
MELO3C020993	Cucumber (Chinese Long) v2	cumeB543
MELO3C020993	Watermelon (Charleston Gray)	mewcgB173
MELO3C020993	Watermelon (97103) v1	mewmB194
MELO3C020993	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C020993	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C020993	Cucumber (Gy14) v2	cgybmeB481
MELO3C020993	Silver-seed gourd	carmeB0433
MELO3C020993	Cucumber (Chinese Long) v3	cucmeB560