MELO3C020903.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C020903.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein LTV1 homolog
Locationchr11 : 3056271 .. 3056423 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTATGACACCTCCAGAATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTGTAATTTATCGTGA

mRNA sequence

GCTTATGACACCTCCAGAATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTGTAATTTATCGTGA

Coding sequence (CDS)

ATGATTGTTTCTAGAGTGAATGTTGATGTCGATGAGAACGTCTACAAAGTTGCTTCCAAGATTGTTGGAGTCAGGGTTCAAAATGTTGTTGACCCTGAAATAGTTGCACTTCTTGATGACTGTAATTTATCGTGA

Protein sequence

MIVSRVNVDVDENVYKVASKIVGVRVQNVVDPEIVALLDDCNLS
BLAST of MELO3C020903.2 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-10
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           M+VS++NVD DENVYKVASKIVG+RVQNVVDPEI ALLDD +LS
Sbjct: 161 MVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLS 204

BLAST of MELO3C020903.2 vs. NCBI nr
Match: XP_004146107.1 (PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus] >XP_011650323.1 PREDICTED: protein LTV1 homolog isoform X1 [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_3G006680 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.6e-10
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           MIVS++NVD DEN YKVASKIVGVRVQNVVDPEI ALLDD +LS
Sbjct: 161 MIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLS 204

BLAST of MELO3C020903.2 vs. NCBI nr
Match: XP_022940362.1 (protein LTV1 homolog [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 9.3e-05
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1   MIVSRVNVDVDENV-YKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           +IVS+   D DEN+ YKVASK VGV+VQN +DPEI ALLDD +LS
Sbjct: 161 VIVSQGTSDADENIMYKVASKTVGVKVQNAIDPEIAALLDDDDLS 205

BLAST of MELO3C020903.2 vs. NCBI nr
Match: XP_022134639.1 (protein LTV1 homolog [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   MIVSRVNVDVDEN-VYKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           ++VS+ N D DEN +YKVASK VGV+VQN VDP+I ALLDD +LS
Sbjct: 164 VLVSKGNNDGDENFIYKVASKTVGVKVQNAVDPDIAALLDDDDLS 208

BLAST of MELO3C020903.2 vs. NCBI nr
Match: XP_023525399.1 (protein LTV1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-04
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0

Query: 1   MIVSRVNVDVDENV-YKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           ++VS+   D DEN+ YKVASK VGV+VQN +DPEI ALLDD +LS
Sbjct: 161 VLVSQGTSDADENIMYKVASKTVGVKVQNAIDPEIAALLDDDDLS 205

BLAST of MELO3C020903.2 vs. TrEMBL
Match: tr|A0A1S3BKZ8|A0A1S3BKZ8_CUCME (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-10
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0

Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           M+VS++NVD DENVYKVASKIVG+RVQNVVDPEI ALLDD +LS
Sbjct: 161 MVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLS 204

BLAST of MELO3C020903.2 vs. TrEMBL
Match: tr|A0A0A0L517|A0A0A0L517_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-10
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0

Query: 1   MIVSRVNVDVDENVYKVASKIVGVRVQNVVDPEIVALLDDCNLS 45
           MIVS++NVD DEN YKVASKIVGVRVQNVVDPEI ALLDD +LS
Sbjct: 161 MIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLS 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008448616.15.6e-1081.82PREDICTED: protein LTV1 homolog [Cucumis melo][more]
XP_004146107.19.6e-1084.09PREDICTED: protein LTV1 homolog isoform X2 [Cucumis sativus] >XP_011650323.1 PRE... [more]
XP_022940362.19.3e-0566.67protein LTV1 homolog [Cucurbita moschata][more]
XP_022134639.11.2e-0466.67protein LTV1 homolog [Momordica charantia][more]
XP_023525399.11.6e-0464.44protein LTV1 homolog [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BKZ8|A0A1S3BKZ8_CUCME3.7e-1081.82protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=4 SV=1[more]
tr|A0A0A0L517|A0A0A0L517_CUCSA6.4e-1084.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020903.2.1MELO3C020903.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None