MELO3C020492.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C020492.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionWI12
Locationchr12 : 238760 .. 239443 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACATCCTTTTTAACTCCATCATTATTTCCCAACGAAACTTATTTTGAACTAATAACCACCCCTTCGGCAGCCGTTCGTCGCAATTACGAAACTGGCAAACCCGGAGTGGTCACCGGAGCAAAGGGAAAGCGTTGGGAGAGTGAGAGCCCTTTATGAGGCGTTGGGTACCAAAGACGTGGAGACTGTGCACCGCCTCCTGGCGCCGGATCTGGAGTGGTGGTTCCATGGTCCCCCCTCGCACCAGTACCTGATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTTTTCGCACCCATCTCCCTCGTCCCACTTGGGCCCACCATCGTTCTGGCGGAAGGCTTCCACCCAAAACGCGCCGTTTCGTGGGTTCACGCATGGACCATTACCGATGGAGTCATTACCCACGTGAAAGAATATCTTAATACTTCTGTTACTGTCAAGCGCTTCTCCTCCGCAGCCACCGACGGGGATTCGCCGTCCATATCGCCGCCGCCTAACTGCGAGAGTTTGTGGCAGAGCAAGGTGTGGAGAGAATCCATGCCTGCTCTTGTTTTGGCTCTTTAAAATTATTAATTAATAGTATAATACATATATACACACATATACATACATATATATGGTGTGTGTTTCTTCTGAACAAATAAATTTTCCTGCTTGTGTACTACCCACTTTTGGTTTGT

mRNA sequence

AACACATCCTTTTTAACTCCATCATTATTTCCCAACGAAACTTATTTTGAACTAATAACCACCCCTTCGGCAGCCGTTCGTCGCAATTACGAAACTGGCAAACCCGGAGTGGTCACCGGAGCAAAGGGAAAGCGTTGGGAGAGTGAGAGCCCTTTATGAGGCGTTGGGTACCAAAGACGTGGAGACTGTGCACCGCCTCCTGGCGCCGGATCTGGAGTGGTGGTTCCATGGTCCCCCCTCGCACCAGTACCTGATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTTTTCGCACCCATCTCCCTCGTCCCACTTGGGCCCACCATCGTTCTGGCGGAAGGCTTCCACCCAAAACGCGCCGTTTCGTGGGTTCACGCATGGACCATTACCGATGGAGTCATTACCCACGTGAAAGAATATCTTAATACTTCTGTTACTGTCAAGCGCTTCTCCTCCGCAGCCACCGACGGGGATTCGCCGTCCATATCGCCGCCGCCTAACTGCGAGAGTTTGTGGCAGAGCAAGGTGTGGAGAGAATCCATGCCTGCTCTTGTTTTGGCTCTTTAAAATTATTAATTAATAGTATAATACATATATACACACATATACATACATATATATGGTGTGTGTTTCTTCTGAACAAATAAATTTTCCTGCTTGTGTACTACCCACTTTTGGTTTGT

Coding sequence (CDS)

ATGCGCCTCCTCACCGGCGCCTCCTCCTCCTTCGTTTTCGCACCCATCTCCCTCGTCCCACTTGGGCCCACCATCGTTCTGGCGGAAGGCTTCCACCCAAAACGCGCCGTTTCGTGGGTTCACGCATGGACCATTACCGATGGAGTCATTACCCACGTGAAAGAATATCTTAATACTTCTGTTACTGTCAAGCGCTTCTCCTCCGCAGCCACCGACGGGGATTCGCCGTCCATATCGCCGCCGCCTAACTGCGAGAGTTTGTGGCAGAGCAAGGTGTGGAGAGAATCCATGCCTGCTCTTGTTTTGGCTCTTTAA

Protein sequence

MRLLTGASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNTSVTVKRFSSAATDGDSPSISPPPNCESLWQSKVWRESMPALVLAL
BLAST of MELO3C020492.2 vs. NCBI nr
Match: XP_023523043.1 (senescence associated gene 20-like [Cucurbita pepo subsp. pepo] >XP_023524551.1 senescence associated gene 20-like [Cucurbita pepo subsp. pepo] >XP_023524552.1 senescence associated gene 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 83/114 (72.81%), Postives = 92/114 (80.70%), Query Frame = 0

Query: 1   MRLLTG-ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNT 60
           MRLLTG +SSSFVFAPIS+V  GPT VLAEG+  KRAVSWVHAWTITDGVITHVKEYLNT
Sbjct: 1   MRLLTGVSSSSFVFAPISIVAFGPT-VLAEGYDTKRAVSWVHAWTITDGVITHVKEYLNT 60

Query: 61  SVTVKRFSSAATDGDSPSISPP---------PNCESLWQSKVWRESMPALVLAL 105
           SVTVKRF++AA D +SPS SPP          NC+S+WQSKV  ES+P LVLAL
Sbjct: 61  SVTVKRFATAA-DEESPSSSPPYAEADTLMTTNCQSVWQSKVCGESVPGLVLAL 112

BLAST of MELO3C020492.2 vs. NCBI nr
Match: XP_022949246.1 (senescence associated gene 20-like [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 5.6e-32
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 0

Query: 1   MRLLTG-ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNT 60
           MRLLTG +SSSFVF PIS+V  GPT VLAEG+  KRAVSWVHAWTITDGVITHVKEYLNT
Sbjct: 1   MRLLTGVSSSSFVFVPISIVAFGPT-VLAEGYDTKRAVSWVHAWTITDGVITHVKEYLNT 60

Query: 61  SVTVKRFSSAATDGDSPSISPP---------PNCESLWQSKVWRESMPALVLAL 105
           SVTVKRF++AA D +SPS SPP          NC+S+WQSKV  ES+P LVLAL
Sbjct: 61  SVTVKRFATAA-DEESPSSSPPYAEADTLTTTNCQSVWQSKVCGESVPGLVLAL 112

BLAST of MELO3C020492.2 vs. NCBI nr
Match: XP_022998178.1 (senescence associated gene 20-like [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 7.3e-32
Identity = 82/114 (71.93%), Postives = 91/114 (79.82%), Query Frame = 0

Query: 1   MRLLTG-ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNT 60
           MRLLTG +SSSFVF PIS+V  GPT VLAEG++ KRAVSWVHAWTITDGVITHVKEYLNT
Sbjct: 1   MRLLTGVSSSSFVFTPISIVAFGPT-VLAEGYNTKRAVSWVHAWTITDGVITHVKEYLNT 60

Query: 61  SVTVKRFSSAATDGDSPSISPP---------PNCESLWQSKVWRESMPALVLAL 105
           SVTVKRF +AA D +SPS SPP          NC+S+WQSKV  ES+P LVLAL
Sbjct: 61  SVTVKRFVTAA-DEESPSSSPPYAEADTLMTTNCQSVWQSKVCGESVPGLVLAL 112

BLAST of MELO3C020492.2 vs. NCBI nr
Match: XP_022154901.1 (senescence associated gene 20 [Momordica charantia])

HSP 1 Score: 137.9 bits (346), Expect = 2.0e-29
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 0

Query: 1   MRLLTG--ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLN 60
           MRLLTG  +SSSFVF+P+S+V  GPT+VLAEG+  KRAVSWVHAWTITDGVITHVKEY N
Sbjct: 1   MRLLTGSSSSSSFVFSPVSVVAFGPTVVLAEGYDAKRAVSWVHAWTITDGVITHVKEYFN 60

Query: 61  TSVTVKRFSSAATDGDSPSISPPPNCESLWQSKV--WRESMPALVLAL 105
           TSVTVKRF++   D      SP  NC+S+WQSKV    +S+P LVLAL
Sbjct: 61  TSVTVKRFATVTDD------SPAANCQSVWQSKVCGGDDSVPGLVLAL 102

BLAST of MELO3C020492.2 vs. NCBI nr
Match: PNS91728.1 (hypothetical protein POPTR_019G125900v3 [Populus trichocarpa])

HSP 1 Score: 108.2 bits (269), Expect = 1.7e-20
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 5   TGASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNTSVTVK 64
           T  S SF+F PIS +    ++VL EGF+    VSWVHAWT+T+G+IT VKEY NTSVTV 
Sbjct: 110 TRPSKSFIFHPISNIVAFGSMVLVEGFNKDWNVSWVHAWTVTNGIITQVKEYFNTSVTVT 169

Query: 65  RFSSAATDGDSPSISPPP--NCESLWQSKVW-RESMPALVLAL 105
           RF    +   SP I+ PP  NC+S+WQSKV   +S+P LVLAL
Sbjct: 170 RFGDGGSIASSPGITSPPRANCQSVWQSKVSDNKSVPGLVLAL 212

BLAST of MELO3C020492.2 vs. TAIR10
Match: AT3G10985.1 (senescence associated gene 20)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-20
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 1   MRLLTG----ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEY 60
           MR+LTG    +SSSF F P+S+V  G T V+AEG     ++SW+HAWT+ +G+IT V+EY
Sbjct: 1   MRVLTGGVSPSSSSFEFVPLSVVSFGST-VIAEGCDAATSISWIHAWTVANGIITQVREY 60

Query: 61  LNTSVTVKRFSSAATDGDSPSISPPPNCESLWQSKVWRES---MPALVLAL 105
            NTS+TV R  +      S  I+PP +C S+W+S+    +   +P LVLA+
Sbjct: 61  SNTSLTVTRIGNVVAGRRSAEIAPPSHCSSVWESQFSGRAGKPVPGLVLAI 110

BLAST of MELO3C020492.2 vs. TAIR10
Match: AT5G01740.1 (Nuclear transport factor 2 (NTF2) family protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.3e-10
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 0

Query: 1   MRLLTG---ASSSFVFAP--ISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKE 60
           MRLLTG      SF F P  + +V  G   V+AEG+   R V WVH W + DGV+T ++E
Sbjct: 59  MRLLTGEPPRQVSFRFEPSSVQVVVPGHDCVIAEGWEGSR-VYWVHVWKLKDGVVTELRE 118

Query: 61  YLNTSVTVKRFSSAATDGDSPSISPPPNCESLWQS---KVWRESMPALVLAL 105
           Y NT +TV  +S  A   D         C ++W+S    + R S+P+L+LA+
Sbjct: 119 YFNTWLTVTDYSLGAVGWDM------GRC-TVWESVPRDLARGSLPSLLLAI 162

BLAST of MELO3C020492.2 vs. Swiss-Prot
Match: sp|Q94AK6|SAG20_ARATH (Senescence associated gene 20 OS=Arabidopsis thaliana OX=3702 GN=SAG20 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-19
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 1   MRLLTG----ASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEY 60
           MR+LTG    +SSSF F P+S+V  G T V+AEG     ++SW+HAWT+ +G+IT V+EY
Sbjct: 1   MRVLTGGVSPSSSSFEFVPLSVVSFGST-VIAEGCDAATSISWIHAWTVANGIITQVREY 60

Query: 61  LNTSVTVKRFSSAATDGDSPSISPPPNCESLWQSKVWRES---MPALVLAL 105
            NTS+TV R  +      S  I+PP +C S+W+S+    +   +P LVLA+
Sbjct: 61  SNTSLTVTRIGNVVAGRRSAEIAPPSHCSSVWESQFSGRAGKPVPGLVLAI 110

BLAST of MELO3C020492.2 vs. Swiss-Prot
Match: sp|P20144|WUN1_SOLTU (Wound-induced protein 1 OS=Solanum tuberosum OX=4113 GN=WUN1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-15
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 1   MRLLTGA----SSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEY 60
           M++LTG     ++SF F   ++   G ++VL EG  P R+++WVHAWT+TDGVIT V+EY
Sbjct: 1   MQILTGTAKFDNASFQFLHKTIDVFG-SVVLVEGCDPTRSITWVHAWTVTDGVITQVREY 60

Query: 61  LNTSVTVKRFSSAATDGDSPSISPPPNCESLWQSKVWR---ESMPALVLAL 105
            NTS+TV RF  +    D  SI+   +C S+W+S +     +S+P LVLAL
Sbjct: 61  FNTSLTVTRFGKS----DISSIT-TLHCPSVWESSLPNRVGKSVPGLVLAL 105

BLAST of MELO3C020492.2 vs. TrEMBL
Match: tr|A0A2K1WT77|A0A2K1WT77_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G125900v3 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 5   TGASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNTSVTVK 64
           T  S SF+F PIS +    ++VL EGF+    VSWVHAWT+T+G+IT VKEY NTSVTV 
Sbjct: 110 TRPSKSFIFHPISNIVAFGSMVLVEGFNKDWNVSWVHAWTVTNGIITQVKEYFNTSVTVT 169

Query: 65  RFSSAATDGDSPSISPPP--NCESLWQSKVW-RESMPALVLAL 105
           RF    +   SP I+ PP  NC+S+WQSKV   +S+P LVLAL
Sbjct: 170 RFGDGGSIASSPGITSPPRANCQSVWQSKVSDNKSVPGLVLAL 212

BLAST of MELO3C020492.2 vs. TrEMBL
Match: tr|A0A061GYQ0|A0A061GYQ0_THECC (Senescence associated gene 20, putative OS=Theobroma cacao OX=3641 GN=TCM_042245 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/109 (50.46%), Postives = 80/109 (73.39%), Query Frame = 0

Query: 1   MRLLTGASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNTS 60
           MRLLTG++  F+F P+ +   G ++V+ EG++ +R VSWVHAWT+T+G+IT V+EY NTS
Sbjct: 135 MRLLTGSTEPFIFVPLRVAAFG-SLVIVEGYNKERDVSWVHAWTVTNGIITQVREYFNTS 194

Query: 61  VTVKRFSSAATDGDSPSISPPP----NCESLWQSKVWRE-SMPALVLAL 105
           +TV R S+  ++G  PSIS  P    NC+S+WQSK+  + ++P LVLAL
Sbjct: 195 LTVARLSN--SEGGPPSISSAPTVLANCQSIWQSKLCDDKAVPGLVLAL 240

BLAST of MELO3C020492.2 vs. TrEMBL
Match: tr|A0A1R3K5H8|A0A1R3K5H8_9ROSI (Wound-induced protein, Wun1 OS=Corchorus olitorius OX=93759 GN=COLO4_11170 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 53/105 (50.48%), Postives = 77/105 (73.33%), Query Frame = 0

Query: 1   MRLLTGASSSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLNTS 60
           M LLTG++  F+F P+++  +G ++V+ EGF+    V WVHAWT+T+G+IT V+EY NTS
Sbjct: 68  MHLLTGSTERFLFVPLTVSAIG-SLVIVEGFNKDCNVCWVHAWTVTNGIITQVREYFNTS 127

Query: 61  VTVKRFSSAATDGDSPSISPPPNCESLWQSKVW-RESMPALVLAL 105
           +TV R S+  +D  SPS + P NC+S+WQSK+   +S+P LVLAL
Sbjct: 128 LTVARLSN--SDEGSPSPTVPVNCQSVWQSKLCDSKSVPGLVLAL 169

BLAST of MELO3C020492.2 vs. TrEMBL
Match: tr|A0A2N9EI45|A0A2N9EI45_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2202 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 61/117 (52.14%), Postives = 76/117 (64.96%), Query Frame = 0

Query: 1   MRLLTGAS--SSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTITDGVITHVKEYLN 60
           MRLLTG+S   SFVF P S+V  G T VL EG+  +R+VSWVHAWT+TDG+IT V+EY N
Sbjct: 60  MRLLTGSSKEDSFVFVPQSIVAFGST-VLVEGYDKERSVSWVHAWTVTDGIITQVREYFN 119

Query: 61  TSVTVKRFSSA---ATDGDSPSISPPP-------NCESLWQSKVW-RESMPALVLAL 105
           TSV V RF  +      G S +IS P         C+S+W+SK+    S+P LVLAL
Sbjct: 120 TSVIVARFGDSKGQGVGGASQTISSPAVTLKSVNKCQSVWESKLCDNNSVPGLVLAL 175

BLAST of MELO3C020492.2 vs. TrEMBL
Match: tr|A0A059A8H8|A0A059A8H8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00155 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 55/110 (50.00%), Postives = 76/110 (69.09%), Query Frame = 0

Query: 1   MRLLTGAS---SSFVFAPISLVPLGPTIVLAEGFHPKRAVSWVHAWTIT-DGVITHVKEY 60
           MRLLTGA+    +F+F P+S+   GPT VLAEG  P R++ WVHAWT++ DG++T V+EY
Sbjct: 80  MRLLTGAAEPDDTFLFVPVSVTSFGPT-VLAEGSDPARSIFWVHAWTVSADGIVTQVREY 139

Query: 61  LNTSVTVKRFSSAATDGDSPSISPPPNCESLWQSKVWR--ESMPALVLAL 105
            NTS+TV RF  +     S +   P +C+SLW+S V R  +S+P LVLA+
Sbjct: 140 FNTSLTVTRFGDSPPSDPSTAEIAPLHCQSLWESSVSRAGKSVPGLVLAI 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023523043.11.9e-3272.81senescence associated gene 20-like [Cucurbita pepo subsp. pepo] >XP_023524551.1 ... [more]
XP_022949246.15.6e-3271.93senescence associated gene 20-like [Cucurbita moschata][more]
XP_022998178.17.3e-3271.93senescence associated gene 20-like [Cucurbita maxima][more]
XP_022154901.12.0e-2967.59senescence associated gene 20 [Momordica charantia][more]
PNS91728.11.7e-2055.34hypothetical protein POPTR_019G125900v3 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
AT3G10985.12.7e-2045.05senescence associated gene 20[more]
AT5G01740.13.3e-1039.29Nuclear transport factor 2 (NTF2) family protein[more]
Match NameE-valueIdentityDescription
sp|Q94AK6|SAG20_ARATH4.8e-1945.05Senescence associated gene 20 OS=Arabidopsis thaliana OX=3702 GN=SAG20 PE=2 SV=1[more]
sp|P20144|WUN1_SOLTU3.2e-1545.05Wound-induced protein 1 OS=Solanum tuberosum OX=4113 GN=WUN1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A2K1WT77|A0A2K1WT77_POPTR1.1e-2055.34Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G125900v3 PE=... [more]
tr|A0A061GYQ0|A0A061GYQ0_THECC1.4e-2050.46Senescence associated gene 20, putative OS=Theobroma cacao OX=3641 GN=TCM_042245... [more]
tr|A0A1R3K5H8|A0A1R3K5H8_9ROSI2.7e-1950.48Wound-induced protein, Wun1 OS=Corchorus olitorius OX=93759 GN=COLO4_11170 PE=4 ... [more]
tr|A0A2N9EI45|A0A2N9EI45_FAGSY4.7e-1952.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2202 PE=4 SV=1[more]
tr|A0A059A8H8|A0A059A8H8_EUCGR4.7e-1950.00Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009798Wun1-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007568 aging
biological_process GO:0009620 response to fungus
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020492.2.1MELO3C020492.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009798Wound-induced protein Wun1-likePFAMPF07107WI12coord: 1..104
e-value: 3.5E-29
score: 101.0
IPR009798Wound-induced protein Wun1-likePANTHERPTHR33703FAMILY NOT NAMEDcoord: 1..104
NoneNo IPR availablePANTHERPTHR33703:SF4SUBFAMILY NOT NAMEDcoord: 1..104

The following gene(s) are paralogous to this gene:

None