MELO3C020234 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020234
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TATA-binding protein-associated factor MOT1, putative
Location	chr6 : 14915334 .. 14915756 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCCGAACATGTTTGAGGCATTAACCTTAAGAGAGACCCAAGAGTATGATCTAAATGAAGCTATTCGTGTGCATGATACCCCAGAGGGCACATGTCTGCAAGAAAATCCATATGCATTAACATCATTGGCGCCAAGGTTATGGCCATTTATGAGGCACAGTATCACATCAGTTCGTTATTCAGCTATACGTACTTTGGTAGAATATCTTCAATGTTCTAATTATTTTCCATGGAAAAATTGTAGTTAGTTCAGTACAACGTTCATTACATTTACATGTTCCATGCTAAATTGATATTGATTTTTTCATTTCTTTCATCAACCAATATTCAATTTTACAGGAACGGTTGCTAGAAGCAGGATTGAAACAAAATATTTCTGTGCCTTCTACTGCCATTTGGCCGACTACCATTTTGGGTGA

mRNA sequence

ATGTTTCCGAACATGTTTGAGGCATTAACCTTAAGAGAGACCCAAGAGTATGATCTAAATGAAGCTATTCGTGTGCATGATACCCCAGAGGGCACATGTCTGCAAGAAAATCCATATGCATTAACATCATTGGCGCCAAGGTTATGGCCATTTATGAGGCACAGTATCACATCAGTTCGTTATTCAGCTATACGAACGGTTGCTAGAAGCAGGATTGAAACAAAATATTTCTGTGCCTTCTACTGCCATTTGGCCGACTACCATTTTGGGTGA

Coding sequence (CDS)

ATGTTTCCGAACATGTTTGAGGCATTAACCTTAAGAGAGACCCAAGAGTATGATCTAAATGAAGCTATTCGTGTGCATGATACCCCAGAGGGCACATGTCTGCAAGAAAATCCATATGCATTAACATCATTGGCGCCAAGGTTATGGCCATTTATGAGGCACAGTATCACATCAGTTCGTTATTCAGCTATACGAACGGTTGCTAGAAGCAGGATTGAAACAAAATATTTCTGTGCCTTCTACTGCCATTTGGCCGACTACCATTTTGGGTGA

Protein sequence

MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVRYSAIRTVARSRIETKYFCAFYCHLADYHFG*

Homology

[Close]

BLAST of MELO3C020234 vs. Swiss-Prot
Match: BTAF1_ARATH (TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-12
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 5   MFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVRYSAI 64
           M E L+L E Q  +LNE   +    E   ++E+PYAL+ LAPRLWPF RH ITSVR+SAI
Sbjct: 668 MHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDITSVRFSAI 727

Query: 65  RTVAR 70
           RT+ R
Sbjct: 728 RTLER 732

[Close]

BLAST of MELO3C020234 vs. TrEMBL
Match: A0A0A0L730_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305660 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.1e-30
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           MFPNMFE LTLRETQEYDLNEAIRVHDTPEG CLQENPYALTSLAPRLWPFMRHSITSVR
Sbjct: 97  MFPNMFEVLTLRETQEYDLNEAIRVHDTPEGICLQENPYALTSLAPRLWPFMRHSITSVR 156

Query: 61  YSAIRTVAR 70
           YSAIRT+ R
Sbjct: 157 YSAIRTLER 165

[Close]

BLAST of MELO3C020234 vs. TrEMBL
Match: M5WK27_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000203mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           M P +FEALTL+E  E+DLNE   + DT EG  LQ+NP+ L++LAPRLWPFMRHSITSVR
Sbjct: 84  MIPKIFEALTLKENLEFDLNELGSIDDTGEGISLQDNPFMLSTLAPRLWPFMRHSITSVR 143

Query: 61  YSAIRTVAR 70
           YSAI T+ R
Sbjct: 144 YSAILTLER 152

[Close]

BLAST of MELO3C020234 vs. TrEMBL
Match: F6I5H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           M P MF AL  +E QE DLNE + + D  EG  +QENPY L++LAPRLWPFMRHSITSVR
Sbjct: 638 MIPKMFGALASKEKQELDLNEVVCIDDLGEGINIQENPYMLSTLAPRLWPFMRHSITSVR 697

Query: 61  YSAIRTVAR 70
           YSAIRT+ R
Sbjct: 698 YSAIRTLER 706

[Close]

BLAST of MELO3C020234 vs. TrEMBL
Match: B9SD95_RICCO (TATA-binding protein-associated factor MOT1, putative OS=Ricinus communis GN=RCOM_1515310 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 5   MFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVRYSAI 64
           M   +T +E QE DLNE I V D  EG  LQE+PY L++LAPRLWPFMRHSITSVRYSAI
Sbjct: 654 MLPKMTAKEKQELDLNEVIHVDDAVEGKDLQESPYMLSTLAPRLWPFMRHSITSVRYSAI 713

Query: 65  RTVAR 70
           RT+ R
Sbjct: 714 RTLER 718

[Close]

BLAST of MELO3C020234 vs. TrEMBL
Match: A0A0D2VHS4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G197700 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           M P MF   T +E Q +DLNE + V +  E   LQENPY L+ LAPRLWPFMRHSITSVR
Sbjct: 670 MMPKMFGTPTAKEKQNFDLNEVVDVEEVGEAKDLQENPYMLSMLAPRLWPFMRHSITSVR 729

Query: 61  YSAIRTVAR 70
           +SAIRT+ R
Sbjct: 730 HSAIRTLER 738

[Close]

BLAST of MELO3C020234 vs. TAIR10
Match: AT3G54280.2 (AT3G54280.2 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1


Query: 5   MFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVRYSAI 64
           M E L+L E Q  +LNE   +    E   ++E+PYAL+ LAPRLWPF RH ITSVR+SAI
Sbjct: 699 MHEELSLGEEQNIELNEMGHIESIGERRDVKESPYALSGLAPRLWPFTRHDITSVRFSAI 758

Query: 65  RTVAR 70
           RT+ R
Sbjct: 759 RTLER 763

[Close]

BLAST of MELO3C020234 vs. NCBI nr
Match: gi|659114355|ref|XP_008457028.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 8.0e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR
Sbjct: 662 MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 721

Query: 61  YSAIRTVAR 70
           YSAIRT+ R
Sbjct: 722 YSAIRTLER 730

[Close]

BLAST of MELO3C020234 vs. NCBI nr
Match: gi|778680790|ref|XP_011651396.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           MFPNMFE LTLRETQEYDLNEAIRVHDTPEG CLQENPYALTSLAPRLWPFMRHSITSVR
Sbjct: 662 MFPNMFEVLTLRETQEYDLNEAIRVHDTPEGICLQENPYALTSLAPRLWPFMRHSITSVR 721

Query: 61  YSAIRTVAR 70
           YSAIRT+ R
Sbjct: 722 YSAIRTLER 730

[Close]

BLAST of MELO3C020234 vs. NCBI nr
Match: gi|700202662|gb|KGN57795.1| (hypothetical protein Csa_3G305660 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           MFPNMFE LTLRETQEYDLNEAIRVHDTPEG CLQENPYALTSLAPRLWPFMRHSITSVR
Sbjct: 97  MFPNMFEVLTLRETQEYDLNEAIRVHDTPEGICLQENPYALTSLAPRLWPFMRHSITSVR 156

Query: 61  YSAIRTVAR 70
           YSAIRT+ R
Sbjct: 157 YSAIRTLER 165

[Close]

BLAST of MELO3C020234 vs. NCBI nr
Match: gi|595842311|ref|XP_007208394.1| (hypothetical protein PRUPE_ppa000203mg [Prunus persica])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           M P +FEALTL+E  E+DLNE   + DT EG  LQ+NP+ L++LAPRLWPFMRHSITSVR
Sbjct: 84  MIPKIFEALTLKENLEFDLNELGSIDDTGEGISLQDNPFMLSTLAPRLWPFMRHSITSVR 143

Query: 61  YSAIRTVAR 70
           YSAI T+ R
Sbjct: 144 YSAILTLER 152

[Close]

BLAST of MELO3C020234 vs. NCBI nr
Match: gi|645215128|ref|XP_008219029.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Prunus mume])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-17
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 1   MFPNMFEALTLRETQEYDLNEAIRVHDTPEGTCLQENPYALTSLAPRLWPFMRHSITSVR 60
           M P +FEALTL+E  E+DLNE   + DT EG  LQ+NP+ L++LAPRLWPFMRHSITSVR
Sbjct: 664 MIPKIFEALTLKENIEFDLNELGSIDDTGEGISLQDNPFMLSTLAPRLWPFMRHSITSVR 723

Query: 61  YSAIRTVAR 70
           YSAI T+ R
Sbjct: 724 YSAILTLER 732

The following BLAST results are available for this feature:

BLAST of MELO3C020234 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTAF1_ARATH	2.2e-12	55.38	TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE...	[more]

BLAST of MELO3C020234 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L730_CUCSA	8.1e-30	94.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G305660 PE=4 SV=1	[more]
M5WK27_PRUPE	1.2e-17	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000203mg PE=4 SV=1	[more]
F6I5H6_VITVI	2.1e-17	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00350 PE=4 SV=...	[more]
B9SD95_RICCO	1.1e-15	67.69	TATA-binding protein-associated factor MOT1, putative OS=Ricinus communis GN=RCO...	[more]
A0A0D2VHS4_GOSRA	1.9e-15	62.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G197700 PE=4 SV=1	[more]

BLAST of MELO3C020234 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54280.2	1.2e-13	55.38	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP b...	[more]

BLAST of MELO3C020234 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114355\|ref\|XP_008457028.1\|	8.0e-31	97.10	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo]	[more]
gi\|778680790\|ref\|XP_011651396.1\|	1.2e-29	94.20	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus]	[more]
gi\|700202662\|gb\|KGN57795.1\|	1.2e-29	94.20	hypothetical protein Csa_3G305660 [Cucumis sativus]	[more]
gi\|595842311\|ref\|XP_007208394.1\|	1.7e-17	66.67	hypothetical protein PRUPE_ppa000203mg [Prunus persica]	[more]
gi\|645215128\|ref\|XP_008219029.1\|	2.3e-17	66.67	PREDICTED: TATA-binding protein-associated factor BTAF1 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020234T1	MELO3C020234T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020234	CsaV3_3G021050	Cucumber (Chinese Long) v3	cucmeB249

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020234	Wax gourd	mewgoB542
MELO3C020234	Cucumber (Gy14) v1	cgymeB609
MELO3C020234	Cucurbita maxima (Rimu)	cmameB243
MELO3C020234	Cucurbita maxima (Rimu)	cmameB431
MELO3C020234	Cucurbita moschata (Rifu)	cmomeB231
MELO3C020234	Cucurbita moschata (Rifu)	cmomeB421
MELO3C020234	Wild cucumber (PI 183967)	cpimeB243
MELO3C020234	Cucumber (Chinese Long) v2	cumeB246
MELO3C020234	Watermelon (Charleston Gray)	mewcgB427
MELO3C020234	Watermelon (97103) v1	mewmB461
MELO3C020234	Cucurbita pepo (Zucchini)	cpemeB529
MELO3C020234	Cucurbita pepo (Zucchini)	cpemeB586
MELO3C020234	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C020234	Cucumber (Gy14) v2	cgybmeB212
MELO3C020234	Silver-seed gourd	carmeB0515
MELO3C020234	Silver-seed gourd	carmeB0756
MELO3C020234	Watermelon (97103) v2	mewmbB434