MELO3C020213.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C020213.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Locationchr06 : 16506947 .. 16507129 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

mRNA sequence

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

Coding sequence (CDS)

ATGTGGCGAGCATCTGGAATAACTAATGAATTACAACTCTATTGTACCGCAATTGGTGCATTAGTCTTTGCAGCCTTAATGCTTTTTGCTGGTTGGTTTCATTATCACAAGGCTGCTCCAAAATTGGCTTGGTTCCAAAATGTAGAATCCATGTTGAATCACCATTTAACGGGTCTCCAGTAA

Protein sequence

MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGLQ
BLAST of MELO3C020213.2 vs. NCBI nr
Match: YP_004841783.1 (photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo] >AEM76892.1 photosystem I P700 apoprotein A1 (chloroplast) [Cucumis melo subsp. melo] >ASY96362.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo subsp. agrestis] >ASY96449.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo subsp. agrestis] >ASY96536.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo subsp. agrestis] >ASY96622.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. conomon] >ASY96710.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. makuwa] >ASY96797.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. momordica] >ASY96884.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. dudaim] >ASY96971.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. cantalupo] >ASY97058.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. cantalupo] >ASY97145.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. inodorus] >ASY97232.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. cantalupo] >ASY97319.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. flexuosus] >ASY97406.1 photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Cucumis melo var. flexuosus])

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. NCBI nr
Match: AEN56132.1 (hypothetical protein (mitochondrion) [Cucumis melo subsp. melo])

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. NCBI nr
Match: AFA27130.1 (photosystem I P700 apoprotein A1, partial (plastid) [Belosynapsis ciliata])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. NCBI nr
Match: AFA27163.1 (photosystem I P700 apoprotein A1, partial (plastid) [Tradescantia ohiensis])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. NCBI nr
Match: YP_007889716.1 (photosystem I P700 apoprotein A1 (chloroplast) [Vigna angularis] >BAN14920.1 photosystem I P700 apoprotein A1 (chloroplast) [Vigna angularis])

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

BLAST of MELO3C020213.2 vs. TAIR10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 120.6 bits (301), Expect = 3.4e-28
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGIT+ELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 IWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TAIR10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-08
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 2   WRASGITNELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLAWFQNVESMLNHHLTGL 60
           W   G+     LY  A+  L  +AL L  GW H   K  P+++WF+N ES LNHHL+GL
Sbjct: 124 WYTIGLRTNEDLYTGALFLLFLSALSLIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGL 182

BLAST of MELO3C020213.2 vs. Swiss-Prot
Match: sp|A4GG97|PSAA_PHAVU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris OX=3885 GN=psaA PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-28
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHLTGL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLTGL 202

BLAST of MELO3C020213.2 vs. Swiss-Prot
Match: sp|Q2QD89|PSAA_CUCSA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psaA PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-28
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. Swiss-Prot
Match: sp|Q0ZJ20|PSAA_VITVI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psaA PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.6e-28
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. Swiss-Prot
Match: sp|Q7YJX2|PSAA_CALFG (Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glaucus OX=212734 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 LWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. Swiss-Prot
Match: sp|Q09X17|PSAA_MORIN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           +WRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ+VESMLNHHL GL
Sbjct: 144 IWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TrEMBL
Match: tr|A0A286NG17|A0A286NG17_CUCME (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. flexuosus OX=1120798 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TrEMBL
Match: tr|A0A249RXK9|A0A249RXK9_CUCME (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. agrestis OX=217619 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TrEMBL
Match: tr|G3ETY5|G3ETY5_CUCME (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. melo OX=412675 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TrEMBL
Match: tr|A0A249RZM5|A0A249RZM5_CUCMN (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. cantalupensis OX=3658 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

BLAST of MELO3C020213.2 vs. TrEMBL
Match: tr|A0A249RYL0|A0A249RYL0_CUCME (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. makuwa OX=1194695 GN=psaA PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1   MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLTGL 60
           MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHL GL
Sbjct: 144 MWRASGITNELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGL 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_004841783.14.5e-2698.31photosystem I P700 apoprotein A1 [Cucumis melo subsp. melo] >AEM76892.1 photosys... [more]
AEN56132.14.5e-2698.31hypothetical protein (mitochondrion) [Cucumis melo subsp. melo][more]
AFA27130.11.3e-2596.61photosystem I P700 apoprotein A1, partial (plastid) [Belosynapsis ciliata][more]
AFA27163.11.3e-2596.61photosystem I P700 apoprotein A1, partial (plastid) [Tradescantia ohiensis][more]
YP_007889716.11.3e-2596.61photosystem I P700 apoprotein A1 (chloroplast) [Vigna angularis] >BAN14920.1 pho... [more]
Match NameE-valueIdentityDescription
ATCG00350.13.4e-2893.22Photosystem I, PsaA/PsaB protein[more]
ATCG00340.11.8e-0844.07Photosystem I, PsaA/PsaB protein[more]
Match NameE-valueIdentityDescription
sp|A4GG97|PSAA_PHAVU4.3e-2896.61Photosystem I P700 chlorophyll a apoprotein A1 OS=Phaseolus vulgaris OX=3885 GN=... [more]
sp|Q2QD89|PSAA_CUCSA5.6e-2896.61Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis sativus OX=3659 GN=psa... [more]
sp|Q0ZJ20|PSAA_VITVI5.6e-2896.61Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera OX=29760 GN=psa... [more]
sp|Q7YJX2|PSAA_CALFG1.2e-2794.92Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus floridus var. glau... [more]
sp|Q09X17|PSAA_MORIN1.6e-2794.92Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica OX=248361 GN=psaA... [more]
Match NameE-valueIdentityDescription
tr|A0A286NG17|A0A286NG17_CUCME3.0e-2698.31Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. flexuosus OX... [more]
tr|A0A249RXK9|A0A249RXK9_CUCME3.0e-2698.31Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. agrestis O... [more]
tr|G3ETY5|G3ETY5_CUCME3.0e-2698.31Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo subsp. melo OX=41... [more]
tr|A0A249RZM5|A0A249RZM5_CUCMN3.0e-2698.31Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. cantalupensi... [more]
tr|A0A249RYL0|A0A249RYL0_CUCME3.0e-2698.31Photosystem I P700 chlorophyll a apoprotein A1 OS=Cucumis melo var. makuwa OX=11... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0016021integral component of membrane
GO:0009522photosystem I
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR006243PSI_PsaA
IPR036408PSI_PsaA/B_sf
IPR001280PSI_PsaA/B
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0015979 photosynthesis
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
cellular_component GO:0009536 plastid
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020213.2.1MELO3C020213.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPRINTSPR00257PHOTSYSPSAABcoord: 13..37
score: 63.41
coord: 52..60
score: 27.12
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 1..59
e-value: 1.5E-25
score: 89.4
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3DG3DSA:1.20.1130.10coord: 1..60
e-value: 3.9E-22
score: 79.8
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILYSSF81558Photosystem I subunits PsaA/PsaBcoord: 1..59
IPR006243Photosystem I PsaAPANTHERPTHR30128:SF8PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1coord: 1..59
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 1..59

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None