MELO3C020008 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020008
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative S-adenosyl-L-methionine-dependent methyltransferase Rv1896c
Location	chr3 : 19446619 .. 19446891 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAAAAAATCTGCCGTCGTTCTACGACCGGCGAATCGAACAGAAACGCAATGAAATCGAGATGGCGGAAACAGGGCAGATAGGTAAAGGATTTGAATTCAAAGAGGAAGATGGATGGGAGAAGAAGTTGTCAATCGAAAAGTCAAAGTCAACGAGAGAGAGAAAAACGCAGGCGGGGCCACCGGAACAAGATCTGCAGTTAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACAAAGTCCGATCAGGCTCCGTTTTTTAA

mRNA sequence

ATGGCTGGAAAAAATCTGCCGTCGTTCTACGACCGGCGAATCGAACAGAAACGCAATGAAATCGAGATGGCGGAAACAGGGCAGATAGGTAAAGGATTTGAATTCAAAGAGGAAGATGGATGGGAGAAGAAGTTGTCAATCGAAAAGTCAAAGTCAACGAGAGAGAGAAAAACGCAGGCGGGGCCACCGGAACAAGATCTGCAGTTAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACAAAGTCCGATCAGGCTCCGTTTTTTAA

Coding sequence (CDS)

ATGGCTGGAAAAAATCTGCCGTCGTTCTACGACCGGCGAATCGAACAGAAACGCAATGAAATCGAGATGGCGGAAACAGGGCAGATAGGTAAAGGATTTGAATTCAAAGAGGAAGATGGATGGGAGAAGAAGTTGTCAATCGAAAAGTCAAAGTCAACGAGAGAGAGAAAAACGCAGGCGGGGCCACCGGAACAAGATCTGCAGTTAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACAAAGTCCGATCAGGCTCCGTTTTTTAA

Protein sequence

MAGKNLPSFYDRRIEQKRNEIEMAETGQIGKGFEFKEEDGWEKKLSIEKSKSTRERKTQAGPPEQDLQLISFLRLRYVRRDDKVRSGSVF*

Homology

[Close]

BLAST of MELO3C020008 vs. TrEMBL
Match: A0A0A0KBS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014575 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-19
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 14 IEQKRNEIEMAETGQIGKGFEFKEEDGWEKKLSIEKSKSTRERKTQAGPPE-------QD 73
          +EQKR EIE AETGQIG+G EFKEED W+KKLS+EKSKSTRE + + G          + 
Sbjct: 1  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74 LQLISFLRLRYVRRDDKVRSGSVF 91
            +ISFLRLRYVRRDD+V+SGS+F
Sbjct: 61 AVIISFLRLRYVRRDDEVQSGSIF 84

[Close]

BLAST of MELO3C020008 vs. NCBI nr
Match: gi|700190633|gb|KGN45837.1| (hypothetical protein Csa_6G014575 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-19
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 14 IEQKRNEIEMAETGQIGKGFEFKEEDGWEKKLSIEKSKSTRERKTQAGPPE-------QD 73
          +EQKR EIE AETGQIG+G EFKEED W+KKLS+EKSKSTRE + + G          + 
Sbjct: 1  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74 LQLISFLRLRYVRRDDKVRSGSVF 91
            +ISFLRLRYVRRDD+V+SGS+F
Sbjct: 61 AVIISFLRLRYVRRDDEVQSGSIF 84

The following BLAST results are available for this feature:

BLAST of MELO3C020008 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBS8_CUCSA	3.8e-19	63.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014575 PE=4 SV=1	[more]

BLAST of MELO3C020008 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190633\|gb\|KGN45837.1\|	5.4e-19	63.10	hypothetical protein Csa_6G014575 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020008T1	MELO3C020008T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020008	CSPI06G02170	Wild cucumber (PI 183967)	cpimeB476
MELO3C020008	CsaV3_6G002330	Cucumber (Chinese Long) v3	cucmeB487

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020008	Wax gourd	mewgoB331
MELO3C020008	Wax gourd	mewgoB353
MELO3C020008	Cucumber (Gy14) v1	cgymeB536
MELO3C020008	Cucurbita maxima (Rimu)	cmameB272
MELO3C020008	Cucurbita maxima (Rimu)	cmameB676
MELO3C020008	Cucurbita moschata (Rifu)	cmomeB263
MELO3C020008	Cucurbita moschata (Rifu)	cmomeB668
MELO3C020008	Cucumber (Chinese Long) v2	cumeB478
MELO3C020008	Watermelon (Charleston Gray)	mewcgB268
MELO3C020008	Watermelon (97103) v1	mewmB333
MELO3C020008	Cucurbita pepo (Zucchini)	cpemeB165
MELO3C020008	Cucurbita pepo (Zucchini)	cpemeB397
MELO3C020008	Bottle gourd (USVL1VR-Ls)	lsimeB256
MELO3C020008	Cucumber (Gy14) v2	cgybmeB418
MELO3C020008	Silver-seed gourd	carmeB0021
MELO3C020008	Silver-seed gourd	carmeB0269
MELO3C020008	Watermelon (97103) v2	mewmbB280