CSPI06G02170 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G02170
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 1605216 .. 1605536 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA

mRNA sequence

ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA

Coding sequence (CDS)

ATGGCCGGAAAAGATCTGCCGTCGTTCTACGAGTGGCGAATGGAACAGAAACGCGAAGAAATCGAGAAGGCGGAAACAGGGCAGATAGGTGAAGGATTGGAATTCAAAGAGGAAGATAGATGGAAGAAGAAGTTGTCAATGGAAAAGTCAAAGTCAACGAGAGAAGGAGAGAGGGAGAGAGGGAGAGAGAGACGCAGGCGTGCCACCGGAACAAGGTCTGCACTTATAATCTCTTTCCTTCGTCTTCGTTACGTCCGGAGAGACGACGAAGTCCAAACAGGCTCCATTTTTTTTAAAAGAAAATATTTATCAACACAATGA
Homology
[Close]
BLAST of CSPI06G02170 vs. TrEMBL
Match: A0A0A0KBS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014575 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-39
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 14  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 73
           MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS
Sbjct: 1   MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74  ALIISFLRLRYVRRDDEVQTGSIFFKRKYLSTQ 107
           A+IISFLRLRYVRRDDEVQ+GSIF+KRKYLSTQ
Sbjct: 61  AVIISFLRLRYVRRDDEVQSGSIFYKRKYLSTQ 93

[Close]
BLAST of CSPI06G02170 vs. NCBI nr
Match: gi|700190633|gb|KGN45837.1| (hypothetical protein Csa_6G014575 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.5e-39
Identity = 90/93 (96.77%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 14  MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 73
           MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS
Sbjct: 1   MEQKREEIEKAETGQIGEGLEFKEEDRWKKKLSMEKSKSTREGERERGRERRRRATGTRS 60

Query: 74  ALIISFLRLRYVRRDDEVQTGSIFFKRKYLSTQ 107
           A+IISFLRLRYVRRDDEVQ+GSIF+KRKYLSTQ
Sbjct: 61  AVIISFLRLRYVRRDDEVQSGSIFYKRKYLSTQ 93

The following BLAST results are available for this feature:
BLAST of CSPI06G02170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G02170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBS8_CUCSA3.9e-3996.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014575 PE=4 SV=1[more]
BLAST of CSPI06G02170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G02170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190633|gb|KGN45837.1|5.5e-3996.77hypothetical protein Csa_6G014575 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G02170.1CSPI06G02170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G02170MELO3C020008Melon (DHL92) v3.5.1cpimeB476
CSPI06G02170MELO3C020008.2Melon (DHL92) v3.6.1cpimedB464
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G02170Cucurbita pepo (Zucchini)cpecpiB199
CSPI06G02170Cucurbita pepo (Zucchini)cpecpiB461
CSPI06G02170Bottle gourd (USVL1VR-Ls)cpilsiB451
CSPI06G02170Bottle gourd (USVL1VR-Ls)cpilsiB465
CSPI06G02170Cucumber (Gy14) v2cgybcpiB288
CSPI06G02170Silver-seed gourdcarcpiB0024
CSPI06G02170Silver-seed gourdcarcpiB0301
CSPI06G02170Silver-seed gourdcarcpiB0709
CSPI06G02170Cucumber (Chinese Long) v3cpicucB357
CSPI06G02170Cucumber (Chinese Long) v3cpicucB364
CSPI06G02170Watermelon (97103) v2cpiwmbB447
CSPI06G02170Watermelon (97103) v2cpiwmbB508
CSPI06G02170Wax gourdcpiwgoB583
CSPI06G02170Cucumber (Gy14) v1cgycpiB213
CSPI06G02170Cucumber (Gy14) v1cgycpiB491
CSPI06G02170Cucurbita maxima (Rimu)cmacpiB314
CSPI06G02170Cucurbita maxima (Rimu)cmacpiB777
CSPI06G02170Cucurbita maxima (Rimu)cmacpiB783
CSPI06G02170Cucurbita maxima (Rimu)cmacpiB784
CSPI06G02170Cucurbita moschata (Rifu)cmocpiB305
CSPI06G02170Cucurbita moschata (Rifu)cmocpiB768
CSPI06G02170Cucurbita moschata (Rifu)cmocpiB773
CSPI06G02170Cucumber (Chinese Long) v2cpicuB308
CSPI06G02170Cucumber (Chinese Long) v2cpicuB314
CSPI06G02170Watermelon (Charleston Gray)cpiwcgB450
CSPI06G02170Watermelon (Charleston Gray)cpiwcgB516
CSPI06G02170Watermelon (97103) v1cpiwmB502
CSPI06G02170Watermelon (97103) v1cpiwmB553