MELO3C019443 (gene) Melon (DHL92) v3.5.1

NameMELO3C019443
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSerine hydroxymethyltransferase
Locationchr6 : 9743595 .. 9744946 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGGTGAGATTGAAATCCTTTGTCATGAGCGCGCATTTTGGCAGCATTTGATCTTAATCCTCACACGTGGGGAGTTAACGTTCAACCTTATTCATGCACATCTGCAAATTTTTCCGTCTAAACTGGTTATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGTGTGAATTTTTCGTCATCTTTAGCGATGTACTATCCCTTTAATGTCTGTGTAAAAAAAAAAAAAAATTTGGTTCGGGTCCACAAAGTTCTTGGTTTTCTTATCATATGTTCTAGTTACTATGACGTTCTCATTCTCTTGGGTTGCAATTTAGCTGGTTGTTAATATATTCATAATAATTGAATTGTTCTACCTGACACTTAGAAAAGGCTTCAAATGTGGTTGTGTGGAAATTTATTGTAGTTTTTAGCATTTAGGTTATGAATGGCTATGAAACTTAGTGATAGGAAAATGTAACTTATCGAGAGATTATGGTAGAGACTGATTTTAGGACTTAACCCTAGTTTACAAGTGCGTTGGGCCAAGATGTCAACCCATGGATATATTTTTTTTTGGACCAAAACGATTTGGTATTTATTCTTTCATGGTGGATATGTATTTATCAGAAAAACTGAAAGCTTGACCAACATCTATTATTTTTCTCAGCAGTAGGATGTTATTTTTTCTCTTCCTTTTCTACTTGGTTCTAATATACAGTTTTGTTCAACTGTGTGCTTATGTAGTTCTCAGTATTATTTGTTTACATGTGTAATTGTTTCTTCACTTACATTGTTTGGTCCAGTTCATCACTACTTCATACATGTGATCTTGTAATTTTGAATGAAGAATTGTCTCCATTCTGTTTATACTTTGATTGTGGTTTAAAATTTTGTTACAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

mRNA sequence

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Coding sequence (CDS)

ATGGAGACACGAAGGAGATTTGTACGCTCGTGGGGTAATCAGACCCTTCGATCTGTGGATCCTAGGTTGTATGGGATTATAAAGAAAGAGAAACAATTCCAAATCAATGGCATTGAATTGTTTGCTTCTGAAAATTATGTGCGTCGAGCTGTAATGGAAGCACTTGGAAGCCACTTGACTAATAAGTACTCAAAAGGTATTCCTGGTGCGAGGTACTACGGTGGAAATCAATATATAGATTATGATAAGCTTGAGGAGAGGGCGCTTGCCTTTTGCCCTAAACTACTTATCTGTGGAGGGAGCGCGTATCCTCGTGAATTGGATTATGCAAGGTTTAGGCAGAATGCAGATAAGTTTGGAGCAGTTCTGATGTGTGATATGGCTCAAATTAGTGGCCTTGTTGCTGCTAAGGAATGTGCGAGTCTTTTTGAGTACTGTGATGTTGTGACTTCAACTACTCATAAGAGCCTTCGAAGTCCAAGGCGAGGTATAATTTTTTTATAA

Protein sequence

METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGGNQYIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRGIIFL*
BLAST of MELO3C019443 vs. Swiss-Prot
Match: GLYC4_ARATH (Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.4e-34
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEE+AL F PKLLICGGSAYPR+ DYARFR  ADK GA+L+CDMA ISGLVAA+
Sbjct: 167 YIDYDKLEEKALDFRPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQ 226

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           E A+ FEYCDVVT+TTHKSLR PR G+IF
Sbjct: 227 EAANPFEYCDVVTTTTHKSLRGPRAGMIF 255


HSP 2 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 8  VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
          V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4  VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68 PGARYYGGNQYID 81
          PG RYYGGN++ID
Sbjct: 64 PGNRYYGGNEFID 76

BLAST of MELO3C019443 vs. Swiss-Prot
Match: GLYC7_ARATH (Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-32
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLE++AL + PK+LICGGS+YPR+ D+AR RQ ADK GAVLMCDMA ISGLVA K
Sbjct: 293 YIDYDKLEDKALDYRPKILICGGSSYPRDWDFARVRQIADKCGAVLMCDMAHISGLVATK 352

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC++ F++CD+VTSTTHK LR PR GIIF
Sbjct: 353 ECSNPFDHCDIVTSTTHKGLRGPRGGIIF 381


HSP 2 Score: 115.2 bits (287), Expect = 7.1e-25
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQYID 81
           NKYS+G+PGARYY GNQYID
Sbjct: 183 NKYSEGMPGARYYTGNQYID 202

BLAST of MELO3C019443 vs. Swiss-Prot
Match: GLYC6_ARATH (Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEE+AL + PK+LICGGS+YPR+ ++ RFR  ADK GAVLM DMAQISGLVAAK
Sbjct: 297 YIDYDKLEEKALDYRPKILICGGSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAK 356

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           E  + F+YCD+VTSTTHKSLR PR GIIF
Sbjct: 357 ESPNPFDYCDIVTSTTHKSLRGPRGGIIF 385


HSP 2 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQYIDYDKL--EERALA 91
           NKYS+G+PGARYY GNQYID  ++  +ERALA
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALA 218

BLAST of MELO3C019443 vs. Swiss-Prot
Match: GLYC5_ARATH (Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.0e-31
Identity = 72/124 (58.06%), Postives = 82/124 (66.13%), Query Frame = 1

Query: 56  GSHLTNKY----SKGIPGARYYGGNQ---------YIDYDKLEERALAFCPKLLICGGSA 115
           G H+T+ Y     K I     Y  N          YIDYDKLEE+A+ F PKL+ICGG++
Sbjct: 132 GGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTS 191

Query: 116 YPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRR 167
           YPRE DYARFR  ADK GA L+CDMA  S LVAA+E A  FEYCDVVT++THKSLR PR 
Sbjct: 192 YPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRA 251


HSP 2 Score: 95.9 bits (237), Expect = 4.5e-19
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 1

Query: 8  VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
          V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4  VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68 PGARYYGGNQYID 81
          PG RYYGG ++ID
Sbjct: 64 PGNRYYGGTEFID 76

BLAST of MELO3C019443 vs. Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-28
Identity = 70/122 (57.38%), Postives = 77/122 (63.11%), Query Frame = 1

Query: 56  GSHLTNKYS---KGIPGARYY--------GGNQYIDYDKLEERALAFCPKLLICGGSAYP 115
           G HLT+ Y    K I  +  +        G +  IDY +LEE AL F PKL+I G SAYP
Sbjct: 130 GGHLTHGYQTDKKKISASSIFFESMPYQIGADGLIDYQRLEENALLFKPKLIISGASAYP 189

Query: 116 RELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRRGI 167
           RE DY R R  ADK GA LMCDMA  SGLVAA+   S F+YCDVVTSTTHK+LR PR GI
Sbjct: 190 REWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGI 249


HSP 2 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 1

Query: 12 GNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGAR 71
          GN  L+ VD  ++ ++ +EK  Q  G+EL ASEN+  RAVMEALGSH TNKY++G PG+R
Sbjct: 6  GNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSR 65

Query: 72 YYGGNQYID 81
          YYGG + +D
Sbjct: 66 YYGGTEVVD 74

BLAST of MELO3C019443 vs. TrEMBL
Match: M0TY90_MUSAM (Serine hydroxymethyltransferase OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 108/186 (58.06%), Postives = 127/186 (68.28%), Query Frame = 1

Query: 8   VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
           V  WG   L +VDP ++ +I+ EK  Q +GIEL ASEN+   AV+EALGS LTNKYS+G+
Sbjct: 4   VAEWGLTPLSAVDPEIHDLIEHEKHRQSHGIELIASENFTSFAVIEALGSALTNKYSEGM 63

Query: 68  PGARYYGGNQ---------------------------YIDYDKLEERALAFCPKLLICGG 127
           PG RYYGG                             YIDYDKLEE+AL F PKL+ICGG
Sbjct: 64  PGNRYYGGASMSSPTPKISATSIYFESLPYKVSSVTGYIDYDKLEEKALDFRPKLIICGG 123

Query: 128 SAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSP 167
           SAYPR+ DYARFR  ADK GA+L+CDMA ISGLVAA+E A+ FE CDVVT+TTHKSLR P
Sbjct: 124 SAYPRDWDYARFRSIADKCGALLLCDMAHISGLVAAQEAANPFESCDVVTTTTHKSLRGP 183

BLAST of MELO3C019443 vs. TrEMBL
Match: A0A0A0LAD1_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.3e-37
Identity = 81/89 (91.01%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEERAL F PKLLICGGSAYPRELDYARFRQ ADK GAVLMCDMAQISGLVAAK
Sbjct: 283 YIDYDKLEERALDFRPKLLICGGSAYPRELDYARFRQIADKCGAVLMCDMAQISGLVAAK 342

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC S FEYCDVVTSTTHKSLR PR GIIF
Sbjct: 343 ECVSPFEYCDVVTSTTHKSLRGPRGGIIF 371

BLAST of MELO3C019443 vs. TrEMBL
Match: A0A0A0LAD1_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-32
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQYIDYDKL--EERALA 91
           NKYS+G+PGARYYGGNQYID  ++   ERALA
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALA 204


HSP 2 Score: 156.4 bits (394), Expect = 3.1e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YID+DKLEERAL F PK+LICGGS+YPRELDY RFRQ ADK GAVL+CDMAQISGLVAAK
Sbjct: 301 YIDFDKLEERALDFRPKILICGGSSYPRELDYTRFRQIADKCGAVLLCDMAQISGLVAAK 360

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC+S FEYCD+VTSTTHKSLR PR GIIF
Sbjct: 361 ECSSPFEYCDIVTSTTHKSLRGPRGGIIF 389

BLAST of MELO3C019443 vs. TrEMBL
Match: S8BXF1_9LAMI (Serine hydroxymethyltransferase OS=Genlisea aurea GN=M569_15761 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.4e-24
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           M  RR  VR WGN +L++ DP ++ I++KEKQ Q  GIEL ASEN+V +AVMEALGSHLT
Sbjct: 131 MVARRNAVREWGNVSLQNADPEIFQIMEKEKQRQFKGIELIASENFVCKAVMEALGSHLT 190

Query: 61  NKYSKGIPGARYYGGNQYID 81
           NKYS+G+PGARYYGGNQYID
Sbjct: 191 NKYSEGMPGARYYGGNQYID 210


HSP 2 Score: 155.2 bits (391), Expect = 6.9e-35
Identity = 80/126 (63.49%), Postives = 91/126 (72.22%), Query Frame = 1

Query: 56  GSHLTNKYSKGIPGARYYGGNQ---------------YIDYDKLEERALAFCPKLLICGG 115
           G HL++ Y   +PG +    +                YIDYDK+EE+A+ F PK+LICGG
Sbjct: 230 GGHLSHGYC--VPGGKKVSASSIFFESLPYKVNPQTGYIDYDKMEEKAMDFRPKILICGG 289

Query: 116 SAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSP 167
           S+YPRE DYARFRQ ADK GAVLMCDMA ISGLVAAKECAS F+YCDVVTSTTHKSLR P
Sbjct: 290 SSYPREWDYARFRQVADKIGAVLMCDMAHISGLVAAKECASPFDYCDVVTSTTHKSLRGP 349

BLAST of MELO3C019443 vs. TrEMBL
Match: B9RJC7_RICCO (Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_1033180 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-23
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ L   DP ++ I++KEKQ QI GIEL ASEN+V RAVMEALGSHLT
Sbjct: 95  LESRRAMVRAWGNQPLPFADPEIHEIMEKEKQRQIKGIELIASENFVCRAVMEALGSHLT 154

Query: 61  NKYSKGIPGARYYGGNQYID 81
           NKYS+G+PG+RYY GNQ ID
Sbjct: 155 NKYSEGLPGSRYYTGNQLID 174


HSP 2 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           Y+DYDKLEERAL F PK+LICGGS+YPR+ DYARFRQ ADK GA L+CDMAQISGL+AAK
Sbjct: 292 YVDYDKLEERALDFRPKILICGGSSYPRDWDYARFRQIADKCGAFLLCDMAQISGLIAAK 351

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           ECAS FEYCD+VTSTTHKSLR PR GIIF
Sbjct: 352 ECASPFEYCDIVTSTTHKSLRGPRGGIIF 380

BLAST of MELO3C019443 vs. TAIR10
Match: AT4G13930.1 (AT4G13930.1 serine hydroxymethyltransferase 4)

HSP 1 Score: 145.2 bits (365), Expect = 3.6e-35
Identity = 70/89 (78.65%), Postives = 76/89 (85.39%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEE+AL F PKLLICGGSAYPR+ DYARFR  ADK GA+L+CDMA ISGLVAA+
Sbjct: 167 YIDYDKLEEKALDFRPKLLICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQ 226

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           E A+ FEYCDVVT+TTHKSLR PR G+IF
Sbjct: 227 EAANPFEYCDVVTTTTHKSLRGPRAGMIF 255


HSP 2 Score: 101.3 bits (251), Expect = 6.0e-22
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 8  VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
          V SWGN +L SVDP ++ +I+KEK+ Q  GIEL ASEN+   AV+EALGS LTNKYS+GI
Sbjct: 4  VSSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGI 63

Query: 68 PGARYYGGNQYID 81
          PG RYYGGN++ID
Sbjct: 64 PGNRYYGGNEFID 76

BLAST of MELO3C019443 vs. TAIR10
Match: AT1G36370.1 (AT1G36370.1 serine hydroxymethyltransferase 7)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-33
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLE++AL + PK+LICGGS+YPR+ D+AR RQ ADK GAVLMCDMA ISGLVA K
Sbjct: 293 YIDYDKLEDKALDYRPKILICGGSSYPRDWDFARVRQIADKCGAVLMCDMAHISGLVATK 352

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC++ F++CD+VTSTTHK LR PR GIIF
Sbjct: 353 ECSNPFDHCDIVTSTTHKGLRGPRGGIIF 381


HSP 2 Score: 115.2 bits (287), Expect = 4.0e-26
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WG+Q +   DP ++ +++KEKQ Q+ GIEL ASEN+V RAVMEALGSHLT
Sbjct: 123 LESRRAAVRAWGDQPIHLADPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLT 182

Query: 61  NKYSKGIPGARYYGGNQYID 81
           NKYS+G+PGARYY GNQYID
Sbjct: 183 NKYSEGMPGARYYTGNQYID 202

BLAST of MELO3C019443 vs. TAIR10
Match: AT1G22020.1 (AT1G22020.1 serine hydroxymethyltransferase 6)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 66/89 (74.16%), Postives = 74/89 (83.15%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEE+AL + PK+LICGGS+YPR+ ++ RFR  ADK GAVLM DMAQISGLVAAK
Sbjct: 297 YIDYDKLEEKALDYRPKILICGGSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAK 356

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           E  + F+YCD+VTSTTHKSLR PR GIIF
Sbjct: 357 ESPNPFDYCDIVTSTTHKSLRGPRGGIIF 385


HSP 2 Score: 121.3 bits (303), Expect = 5.6e-28
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           +E+RR  VR+WGNQ++   DP ++  ++KEKQ Q  GIEL ASEN+V RAVMEALGSHLT
Sbjct: 127 IESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLT 186

Query: 61  NKYSKGIPGARYYGGNQYIDYDKL--EERALA 91
           NKYS+G+PGARYY GNQYID  ++  +ERALA
Sbjct: 187 NKYSEGMPGARYYTGNQYIDQIEILCQERALA 218

BLAST of MELO3C019443 vs. TAIR10
Match: AT4G13890.1 (AT4G13890.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-32
Identity = 72/124 (58.06%), Postives = 82/124 (66.13%), Query Frame = 1

Query: 56  GSHLTNKY----SKGIPGARYYGGNQ---------YIDYDKLEERALAFCPKLLICGGSA 115
           G H+T+ Y     K I     Y  N          YIDYDKLEE+A+ F PKL+ICGG++
Sbjct: 132 GGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTS 191

Query: 116 YPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSPRR 167
           YPRE DYARFR  ADK GA L+CDMA  S LVAA+E A  FEYCDVVT++THKSLR PR 
Sbjct: 192 YPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRA 251


HSP 2 Score: 95.9 bits (237), Expect = 2.5e-20
Identity = 46/73 (63.01%), Postives = 53/73 (72.60%), Query Frame = 1

Query: 8  VRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGI 67
          V SWGN  L  VDP +Y +I+KEK  Q  GIEL A+EN+   AVMEALGS LTNKYS+G+
Sbjct: 4  VYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGM 63

Query: 68 PGARYYGGNQYID 81
          PG RYYGG ++ID
Sbjct: 64 PGNRYYGGTEFID 76

BLAST of MELO3C019443 vs. TAIR10
Match: AT4G32520.1 (AT4G32520.1 serine hydroxymethyltransferase 3)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 56/88 (63.64%), Postives = 62/88 (70.45%), Query Frame = 1

Query: 79  IDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKE 138
           +DYD LE+ A  F PKL+I G SAY R+ DY R R+ AD  GA LM DMA ISGLVAA  
Sbjct: 238 VDYDMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASV 297

Query: 139 CASLFEYCDVVTSTTHKSLRSPRRGIIF 167
            A  FEYCD+VT+TTHKSLR PR G+IF
Sbjct: 298 VADPFEYCDIVTTTTHKSLRGPRGGMIF 325


HSP 2 Score: 87.8 bits (216), Expect = 6.9e-18
Identity = 46/77 (59.74%), Postives = 52/77 (67.53%), Query Frame = 1

Query: 16  LRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLTNKYSKGIPGARYYGG 75
           L  VDP +  II KEK  Q   +EL ASEN+  RAVMEA+GS LTNKYS+G+PG RYYGG
Sbjct: 83  LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142

Query: 76  NQYIDY--DKLEERALA 91
           N+YID      + RALA
Sbjct: 143 NEYIDQLETLCQNRALA 159

BLAST of MELO3C019443 vs. NCBI nr
Match: gi|659112103|ref|XP_008456065.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 82/89 (92.13%), Postives = 82/89 (92.13%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEERAL F PKLLICGGSAYPRELDYARFRQ ADK GAVLMCDMAQISGLVAAK
Sbjct: 283 YIDYDKLEERALDFRPKLLICGGSAYPRELDYARFRQIADKCGAVLMCDMAQISGLVAAK 342

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           ECAS FEYCDVVTSTTHKSLR PR GIIF
Sbjct: 343 ECASPFEYCDVVTSTTHKSLRGPRGGIIF 371

BLAST of MELO3C019443 vs. NCBI nr
Match: gi|659112103|ref|XP_008456065.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQYIDYDKL--EERALA 91
           NKYS+G+PGARYYGGNQYID  ++   ERALA
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALA 204


HSP 2 Score: 162.5 bits (410), Expect = 6.2e-37
Identity = 81/89 (91.01%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YIDYDKLEERAL F PKLLICGGSAYPRELDYARFRQ ADK GAVLMCDMAQISGLVAAK
Sbjct: 283 YIDYDKLEERALDFRPKLLICGGSAYPRELDYARFRQIADKCGAVLMCDMAQISGLVAAK 342

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC S FEYCDVVTSTTHKSLR PR GIIF
Sbjct: 343 ECVSPFEYCDVVTSTTHKSLRGPRGGIIF 371

BLAST of MELO3C019443 vs. NCBI nr
Match: gi|449457095|ref|XP_004146284.1| (PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 73/92 (79.35%), Postives = 81/92 (88.04%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           METRR  VRSWGNQTLR+ DP+LYGI++KEKQ QINGIEL ASENYV RAVMEALGSHLT
Sbjct: 113 METRRSSVRSWGNQTLRAADPKLYGIMEKEKQRQINGIELIASENYVCRAVMEALGSHLT 172

Query: 61  NKYSKGIPGARYYGGNQYIDYDKL--EERALA 91
           NKYS+G+PGARYYGGNQYID  ++   ERALA
Sbjct: 173 NKYSEGMPGARYYGGNQYIDEIEILCRERALA 204


HSP 2 Score: 156.4 bits (394), Expect = 4.5e-35
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           Y+DYDKLEE+AL F PK+LICGGS+YPRE DYARFRQ ADK GAVL+CDMAQISGL+AAK
Sbjct: 303 YVDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLLCDMAQISGLIAAK 362

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           ECAS FEYCD+VTSTTHKSLR PR GIIF
Sbjct: 363 ECASPFEYCDIVTSTTHKSLRGPRGGIIF 391

BLAST of MELO3C019443 vs. NCBI nr
Match: gi|747089415|ref|XP_011092343.1| (PREDICTED: serine hydroxymethyltransferase 6-like [Sesamum indicum])

HSP 1 Score: 122.5 bits (306), Expect = 7.1e-25
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           ME+RR  VR+WGNQ+LR  DP ++ I++KEK+ Q  GIEL ASEN+V  AVMEALGSHLT
Sbjct: 133 MESRRDAVRAWGNQSLRDADPDIFEIMEKEKERQYKGIELIASENFVCNAVMEALGSHLT 192

Query: 61  NKYSKGIPGARYYGGNQYIDYDKLE----ERALA 91
           NKYS+G+PGARYYGGNQYI  D++E    ERALA
Sbjct: 193 NKYSEGMPGARYYGGNQYI--DEIETLCCERALA 224


HSP 2 Score: 156.4 bits (394), Expect = 4.5e-35
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = 1

Query: 78  YIDYDKLEERALAFCPKLLICGGSAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAK 137
           YID+DKLEERAL F PK+LICGGS+YPRELDY RFRQ ADK GAVL+CDMAQISGLVAAK
Sbjct: 301 YIDFDKLEERALDFRPKILICGGSSYPRELDYTRFRQIADKCGAVLLCDMAQISGLVAAK 360

Query: 138 ECASLFEYCDVVTSTTHKSLRSPRRGIIF 167
           EC+S FEYCD+VTSTTHKSLR PR GIIF
Sbjct: 361 ECSSPFEYCDIVTSTTHKSLRGPRGGIIF 389

BLAST of MELO3C019443 vs. NCBI nr
Match: gi|527185784|gb|EPS59049.1| (hypothetical protein M569_15761 [Genlisea aurea])

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1

Query: 1   METRRRFVRSWGNQTLRSVDPRLYGIIKKEKQFQINGIELFASENYVRRAVMEALGSHLT 60
           M  RR  VR WGN +L++ DP ++ I++KEKQ Q  GIEL ASEN+V +AVMEALGSHLT
Sbjct: 131 MVARRNAVREWGNVSLQNADPEIFQIMEKEKQRQFKGIELIASENFVCKAVMEALGSHLT 190

Query: 61  NKYSKGIPGARYYGGNQYID 81
           NKYS+G+PGARYYGGNQYID
Sbjct: 191 NKYSEGMPGARYYGGNQYID 210


HSP 2 Score: 155.2 bits (391), Expect = 9.9e-35
Identity = 80/126 (63.49%), Postives = 91/126 (72.22%), Query Frame = 1

Query: 56  GSHLTNKYSKGIPGARYYGGNQ---------------YIDYDKLEERALAFCPKLLICGG 115
           G HL++ Y   +PG +    +                YIDYDK+EE+A+ F PK+LICGG
Sbjct: 230 GGHLSHGYC--VPGGKKVSASSIFFESLPYKVNPQTGYIDYDKMEEKAMDFRPKILICGG 289

Query: 116 SAYPRELDYARFRQNADKFGAVLMCDMAQISGLVAAKECASLFEYCDVVTSTTHKSLRSP 167
           S+YPRE DYARFRQ ADK GAVLMCDMA ISGLVAAKECAS F+YCDVVTSTTHKSLR P
Sbjct: 290 SSYPREWDYARFRQVADKIGAVLMCDMAHISGLVAAKECASPFDYCDVVTSTTHKSLRGP 349

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GLYC4_ARATH6.4e-3478.65Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1[more]
GLYC7_ARATH2.1e-3273.03Serine hydroxymethyltransferase 7 OS=Arabidopsis thaliana GN=SHM7 PE=2 SV=1[more]
GLYC6_ARATH2.3e-3174.16Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1[more]
GLYC5_ARATH3.0e-3158.06Serine hydroxymethyltransferase 5 OS=Arabidopsis thaliana GN=SHM5 PE=3 SV=1[more]
GLYC1_DICDI5.3e-2857.38Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
M0TY90_MUSAM1.3e-4958.06Serine hydroxymethyltransferase OS=Musa acuminata subsp. malaccensis PE=3 SV=1[more]
A0A0A0LAD1_CUCSA4.3e-3791.01Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1[more]
A0A0A0LAD1_CUCSA7.2e-3279.35Serine hydroxymethyltransferase OS=Cucumis sativus GN=Csa_3G221750 PE=3 SV=1[more]
S8BXF1_9LAMI9.4e-2468.75Serine hydroxymethyltransferase OS=Genlisea aurea GN=M569_15761 PE=3 SV=1[more]
B9RJC7_RICCO4.7e-2368.75Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_1033180 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G13930.13.6e-3578.65 serine hydroxymethyltransferase 4[more]
AT1G36370.11.2e-3373.03 serine hydroxymethyltransferase 7[more]
AT1G22020.11.3e-3274.16 serine hydroxymethyltransferase 6[more]
AT4G13890.11.7e-3258.06 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein[more]
AT4G32520.11.5e-2563.64 serine hydroxymethyltransferase 3[more]
Match NameE-valueIdentityDescription
gi|659112103|ref|XP_008456065.1|2.1e-3792.13PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo][more]
gi|659112103|ref|XP_008456065.1|1.0e-3179.35PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis melo][more]
gi|449457095|ref|XP_004146284.1|1.0e-3179.35PREDICTED: serine hydroxymethyltransferase 7-like [Cucumis sativus][more]
gi|747089415|ref|XP_011092343.1|7.1e-2567.02PREDICTED: serine hydroxymethyltransferase 6-like [Sesamum indicum][more]
gi|527185784|gb|EPS59049.1|1.3e-2368.75hypothetical protein M569_15761 [Genlisea aurea][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001085Ser_HO-MeTrfase
IPR015421PyrdxlP-dep_Trfase_major
IPR015424PyrdxlP-dep_Trfase
IPR019798Ser_HO-MeTrfase_PLP_BS
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003824catalytic activity
GO:0004372glycine hydroxymethyltransferase activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0006544glycine metabolic process
GO:0006563L-serine metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006260 DNA replication
biological_process GO:0006281 DNA repair
biological_process GO:0006310 DNA recombination
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006730 one-carbon metabolic process
biological_process GO:0032259 methylation
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005575 cellular_component
cellular_component GO:0005657 replication fork
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0043140 ATP-dependent 3'-5' DNA helicase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019443T1MELO3C019443T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001085Serine hydroxymethyltransferasePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 1..166
score: 1.6
IPR001085Serine hydroxymethyltransferasePFAMPF00464SHMTcoord: 77..166
score: 9.5
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1GENE3DG3DSA:3.40.640.10coord: 79..166
score: 1.2E-29coord: 45..78
score: 5.
IPR015424Pyridoxal phosphate-dependent transferaseunknownSSF53383PLP-dependent transferasescoord: 6..166
score: 6.3
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding sitePROSITEPS00096SHMTcoord: 147..163
scor
NoneNo IPR availablePANTHERPTHR11680:SF7SERINE HYDROXYMETHYLTRANSFERASE 6-RELATEDcoord: 1..166
score: 1.6

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019443CmaCh16G003850Cucurbita maxima (Rimu)cmameB298
MELO3C019443CmaCh04G005310Cucurbita maxima (Rimu)cmameB691
MELO3C019443CmoCh04G005680Cucurbita moschata (Rifu)cmomeB683
MELO3C019443Cp4.1LG01g01850Cucurbita pepo (Zucchini)cpemeB412
The following gene(s) are paralogous to this gene:

None