MELO3C019393 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019393
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Adenine phosphoribosyltransferase
Location	chr6 : 9041619 .. 9041993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

mRNA sequence

ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

Coding sequence (CDS)

ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

Protein sequence

MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA*

Homology

[Close]

BLAST of MELO3C019393 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L  QD   TR E++R L  IPEL+ +DR R +R LM+N
Sbjct: 571 DIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRN 630

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 631 VDDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of MELO3C019393 vs. TrEMBL
Match: A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 32  ENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCL 91
           +  E + +IR+ ++  NDQ   I EWP +  Q +DA   EV++QL+ IPELS  DR   +
Sbjct: 14  QTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLM 73

Query: 92  RKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA 125
             LM N+ DMKA   +  E+K+DYC V+L+D+A
Sbjct: 74  WTLMCNVHDMKALWEISNELKLDYCTVMLEDNA 106

[Close]

BLAST of MELO3C019393 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 37  VNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQ 96
           V  I  A++  N+QLR IAEWP   + +++  R E  R LR +PEL+ LDRA   R L+ 
Sbjct: 535 VEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLS 594

Query: 97  NLADMKAFLVVPEEMKMDYCKVILQD 123
            + D++ F+++PE+ +  +C+V+L+D
Sbjct: 595 RMDDLRGFVLMPEDEREGFCRVLLRD 620

[Close]

BLAST of MELO3C019393 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1


Query: 32  ENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCL 91
           ++ E V+VI + +E  NDQL+ IA W K     E    +EV++QL+ I EL   DR + +
Sbjct: 36  QHYEAVDVISNEMEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLM 95

Query: 92  RKLMQNLADMKAFLVVPEEMKMDYCKVILQDD 124
           + +   + D++ FL  P ++K++YC+V+L+D+
Sbjct: 96  QIIFHMVDDIEGFLSCPTKLKLEYCRVLLEDN 127

[Close]

BLAST of MELO3C019393 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1


Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L  QD   TR E++R L  IPEL+ +DR R +R LM+N
Sbjct: 571 DIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRN 630

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 631 VDDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of MELO3C019393 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L  QD   TR E++RQL  IPEL+ +DR R +  +M N
Sbjct: 423 DIVRIAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHN 482

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 483 IDDMKAFLEVPDNMKYSYCNIILQEN 508

[Close]

BLAST of MELO3C019393 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-15
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEW  L  QD   TR EV+RQL  IPEL+ +DR R +R L+ N
Sbjct: 165 DILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHN 224

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +IL+++
Sbjct: 225 VNDMKAFLEVPDNMK-PYCSIILEEN 249

[Close]

BLAST of MELO3C019393 vs. NCBI nr
Match: gi|700203303|gb|KGN58436.1| (hypothetical protein Csa_3G643760 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 6.1e-13
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 32  ENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCL 91
           +  E + +IR+ ++  NDQ   I EWP +  Q +DA   EV++QL+ IPELS  DR   +
Sbjct: 14  QTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLM 73

Query: 92  RKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA 125
             LM N+ DMKA   +  E+K+DYC V+L+D+A
Sbjct: 74  WTLMCNVHDMKALWEISNELKLDYCTVMLEDNA 106

[Close]

BLAST of MELO3C019393 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 31  NENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARC 90
           +E  E V VIR  +E  N+QL+ IA+WPK     E   R +V++QL+ IP+L   DRA+ 
Sbjct: 213 SERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKL 272

Query: 91  LRKLMQNLADMKAFLVVPEEMKMDYCKVILQD 123
           ++ L ++L  ++ FL +P E+K++YC ++LQ+
Sbjct: 273 MQILFRSLEAIEGFLSIPTELKLEYCNILLQN 304

The following BLAST results are available for this feature:

BLAST of MELO3C019393 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	2.2e-17	53.49	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LEB9_CUCSA	4.2e-13	43.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1	[more]
E5GBB2_CUCME	2.0e-10	39.53	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFW0_CUCSA	1.7e-09	35.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1	[more]

BLAST of MELO3C019393 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136287\|gb\|ADN34114.1\|	3.1e-17	53.49	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659133698\|ref\|XP_008466863.1\|	4.1e-17	52.33	PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	6.5e-15	52.33	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]
gi\|700203303\|gb\|KGN58436.1\|	6.1e-13	43.01	hypothetical protein Csa_3G643760 [Cucumis sativus]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	2.3e-12	40.22	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58848	melon EST collection version 4.0	transcribed_cluster
MU59094	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019393T1	MELO3C019393T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU59094	MU59094	transcribed_cluster
MU58848	MU58848	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019393	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019393	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019393	Wild cucumber (PI 183967)	cpimeB241
MELO3C019393	Cucumber (Chinese Long) v2	cumeB166
MELO3C019393	Watermelon (Charleston Gray)	mewcgB427
MELO3C019393	Watermelon (97103) v1	mewmB461
MELO3C019393	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019393	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019393	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019393	Cucumber (Gy14) v2	cgybmeB210
MELO3C019393	Silver-seed gourd	carmeB0041
MELO3C019393	Silver-seed gourd	carmeB0651
MELO3C019393	Cucumber (Chinese Long) v3	cucmeB247
MELO3C019393	Watermelon (97103) v2	mewmbB434
MELO3C019393	Wax gourd	mewgoB530
MELO3C019393	Cucumber (Gy14) v1	cgymeB002
MELO3C019393	Cucurbita maxima (Rimu)	cmameB298
MELO3C019393	Cucurbita maxima (Rimu)	cmameB691