MELO3C019146 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019146
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING/U-box superfamily protein
Location	chr8 : 13088785 .. 13089516 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATCAAATCTCTCAATACTCAACTACGGCAGTGGAAATAGATATAGATCTTCCGATGTCCAGAAGAATCCGGAAGCATCCGTCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTGCAACCGCTTTCAGGTGTTAGAGAACGGTGAGCGACAATTAGTAGAGGAACAAGAAGCATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATCTTCAATGGAGACGACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAACCTAAAATTGATGCAGAGGTGGTAGCAACTGCCCTAATCGAGCAGTGGATTGGGATAAGGGACCAACTGAATTCGAGAAGCTGCCATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGGTTCAATATGTTATTGGGGAAGACGGTAGCTCATTTGGTGGAGAAGATTTTAGAGCGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAGTGAGAGACGAAGATGAAAGAATTTGTATTATATGTTTGGATGAAGTTAGGAAAAAGAAGAATGGGCGATGTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTGAAAAATAGCCATTGTTGTCCAATTTGTAGATTTCAAATGCCAATCAGTTCAGGCTTTGGTGAAGATTTTTGA

mRNA sequence

ATGGAATATCAAATCTCTCAATACTCAACTACGGCAGTGGAAATAGATATAGATCTTCCGATGTCCAGAAGAATCCGGAAGCATCCGTCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTGCAACCGCTTTCAGGTGTTAGAGAACGGTGAGCGACAATTAGTAGAGGAACAAGAAGCATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATCTTCAATGGAGACGACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAACCTAAAATTGATGCAGAGGTGGTAGCAACTGCCCTAATCGAGCAGTGGATTGGGATAAGGGACCAACTGAATTCGAGAAGCTGCCATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGGTTCAATATGTTATTGGGGAAGACGGTAGCTCATTTGGTGGAGAAGATTTTAGAGCGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAGTGAGAGACGAAGATGAAAGAATTTGTATTATATGTTTGGATGAAGTTAGGAAAAAGAAGAATGGGCGATGTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTGAAAAATAGCCATTGTTGTCCAATTTGTAGATTTCAAATGCCAATCAGTTCAGGCTTTGGTGAAGATTTTTGA

Coding sequence (CDS)

ATGGAATATCAAATCTCTCAATACTCAACTACGGCAGTGGAAATAGATATAGATCTTCCGATGTCCAGAAGAATCCGGAAGCATCCGTCACCAATCGAACTAATTGGCTTGCTCTTCACCCTACGTCGCCGTTGCAACCGCTTTCAGGTGTTAGAGAACGGTGAGCGACAATTAGTAGAGGAACAAGAAGCATCAAAAGTTCCTCTATGCGACCACCAATTCCCTGTTGAAATCTTCAATGGAGACGACAATTCTCTATTCCAATACCTTTGTTGTAGCTTCGAAAACTACGAACCTAAAATTGATGCAGAGGTGGTAGCAACTGCCCTAATCGAGCAGTGGATTGGGATAAGGGACCAACTGAATTCGAGAAGCTGCCATAAAGTATTTTCAATGACGGTGAATTTGACAATCACAGATGTTGTGGTTCAATATGTTATTGGGGAAGACGGTAGCTCATTTGGTGGAGAAGATTTTAGAGCGGTTCCAGCATGCGACAAAGCTCTTAAGAAGATGTTGAAGAGATTGGAAGTGAGAGACGAAGATGAAAGAATTTGTATTATATGTTTGGATGAAGTTAGGAAAAAGAAGAATGGGCGATGTGGTTTGGAAATGCCTTGTTTACATGTGTTTCATGGGAAATGCATTGAAAATTGGTTGAAAAATAGCCATTGTTGTCCAATTTGTAGATTTCAAATGCCAATCAGTTCAGGCTTTGGTGAAGATTTTTGA

Protein sequence

MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVEEQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRDEDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFGEDF*

Homology

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BLAST of MELO3C019146 vs. Swiss-Prot
Match: SHGR9_ARATH (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana GN=SGR9 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08
Identity = 27/56 (48.21%), Postives = 31/56 (55.36%), Query Frame = 1


Query: 186 CIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFGE 242
           C+IC +E+ +   GR   EMPC H FH KCI  WL   + CP CRFQ+P    F E
Sbjct: 214 CVICKEEMSE---GRDVCEMPCQHFFHWKCILPWLSKKNTCPFCRFQLPTDDVFSE 266

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BLAST of MELO3C019146 vs. Swiss-Prot
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.0e-08
Identity = 29/75 (38.67%), Postives = 39/75 (52.00%), Query Frame = 1


Query: 163 PACDKALKKMLKRLEVRD---EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENW 222
           P   K+  + L R+E+ D   + E  C +C +       GR   EMPC H+FHG CI  W
Sbjct: 189 PPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGR---EMPCKHIFHGDCIVPW 248

Query: 223 LKNSHCCPICRFQMP 235
           L   + CP+CRF++P
Sbjct: 249 LSIRNSCPVCRFELP 260

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BLAST of MELO3C019146 vs. Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 34/99 (34.34%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 150 DGSSFGGEDF--RAVPACDKALKKMLKRLEVRDE--DERI-CIICLDEVRKKKNGRCGLE 209
           D  SF   D+  R  P   KA+ + L  + +  E  D+ + C +CL E  ++++ R   E
Sbjct: 38  DSGSFDLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVR---E 97

Query: 210 MPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFGEDF 244
           MPC H+FH  CI  WL  ++ CP+CR ++P  +   E+F
Sbjct: 98  MPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEF 133

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BLAST of MELO3C019146 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 1


Query: 163 PACDKALKKMLKRLEVRD---EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENW 222
           P   K+  + L R+E+ D     E  C +C +    +   R   EMPC H+FH  CI  W
Sbjct: 173 PPASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAR---EMPCKHLFHDDCIVPW 232

Query: 223 LKNSHCCPICRFQMP 235
           L   + CP+CRF++P
Sbjct: 233 LSIRNSCPVCRFELP 244

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BLAST of MELO3C019146 vs. Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-07
Identity = 26/78 (33.33%), Postives = 39/78 (50.00%), Query Frame = 1


Query: 158 DFRAVPACDKALKKMLKRLEVRDEDERI-CIICLDEVRKKKNGRCGLEMPCLHVFHGKCI 217
           D    P   K + + L R  +R     + C +CL E    +     +EMPC H+FH  CI
Sbjct: 47  DHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEF---EEEETAIEMPCHHLFHSSCI 106

Query: 218 ENWLKNSHCCPICRFQMP 235
             WL  ++ CP+CR+++P
Sbjct: 107 LPWLSKTNSCPLCRYELP 121

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BLAST of MELO3C019146 vs. TrEMBL
Match: A0A0A0L236_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419590 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 3.0e-119
Identity = 207/242 (85.54%), Postives = 223/242 (92.15%), Query Frame = 1


Query: 1   MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60
           MEYQIS+YSTTAVE+DID+P   +I KHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE
Sbjct: 1   MEYQISRYSTTAVEVDIDVPKWTKIPKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60

Query: 61  EQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ 120
           EQE SKVPLCDHQFPVEIFNGD +SLFQYLCCSFENYE KIDAEVVA+ LIEQWI IR+Q
Sbjct: 61  EQEISKVPLCDHQFPVEIFNGDSSSLFQYLCCSFENYESKIDAEVVASVLIEQWIEIRNQ 120

Query: 121 LNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD 180
           +NSRS  KVFSMTVNLTITDVV+QYV+GEDGS+FGGED R VPACDKALKKMLKRLE+R+
Sbjct: 121 VNSRSRDKVFSMTVNLTITDVVLQYVVGEDGSTFGGEDHRVVPACDKALKKMLKRLEMRE 180

Query: 181 EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFG 240
           EDER+C+ICLDEV KKKNGR GLEMPCLHVFHGKCIENW KNSHCCPICRF+MPISS   
Sbjct: 181 EDERVCVICLDEVGKKKNGRIGLEMPCLHVFHGKCIENWFKNSHCCPICRFEMPISSDLD 240

Query: 241 ED 243
           ED
Sbjct: 241 ED 242

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BLAST of MELO3C019146 vs. TrEMBL
Match: A0A0A0K493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067540 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-26
Identity = 75/234 (32.05%), Postives = 121/234 (51.71%), Query Frame = 1


Query: 20  PMSRRIRKHPSP--IELIGLLFTLRRRCNRFQVLENGER---QLVEEQEASKVPLCDHQF 79
           P S+    H SP  ++ I L   +  +C  FQ  E G+     L+ E   S  P    Q 
Sbjct: 31  PQSQNQTPHNSPTFVKQINLKLKVEVKCQHFQADEEGDTFASTLMIEHIVSHHPFPTFQL 90

Query: 80  PVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRS---CHKVFS 139
           PV +F   + +L + L   F+ +   I+ ++VA  +IE W+   +   + S     +++ 
Sbjct: 91  PVSVFRHGNRTLKRLLFQQFQIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYP 150

Query: 140 MTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD-----EDERI- 199
           + + + +  + + + I +   +        VPA + A++ MLKR+E  +     ED+ I 
Sbjct: 151 LEITIELLLLRMIHAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSIN 210

Query: 200 CIICLDEVRKKKNGRCG--LEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISS 238
           C+ICL+E+ KK  G  G  L+MPCLH+FH +CI  WLK SH CP CRF MPI++
Sbjct: 211 CVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINN 264

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BLAST of MELO3C019146 vs. TrEMBL
Match: A0A0A0K2A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068580 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 79/230 (34.35%), Postives = 116/230 (50.43%), Query Frame = 1


Query: 23  RRIRKHPSPIELIGLLFTLRRRCNRFQVLE---NGERQLVEEQEASKVPLCDHQFPVEIF 82
           R  R  P+  + I L F ++ +C  FQ+ E   +    L++E   S+ P    + P+ I 
Sbjct: 36  RTRRNSPTFFKQIDLNFEVQLKCQHFQIREEETSNTTTLIDEHIVSQHPFATFRLPISIL 95

Query: 83  NGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGI-----RDQLNSRSCHKVFSMTV 142
              D +L   L   F  Y   I+ E +   +I+ W+        DQ NS S  +VF    
Sbjct: 96  EHGDKTLKLLLFREFHMYRDIINIEHLVDEIIKYWVTKVEEEEEDQENSTSS-RVFKKIY 155

Query: 143 NLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLE------VRDEDERICII 202
            L IT  ++ + I      +  +    VP  D A++ MLKR+E      + D+D   C+I
Sbjct: 156 RLEITLELLIFQIVRV-MDYQPQVLMMVPTSDSAMESMLKRVENEEIMKLGDDDCIHCVI 215

Query: 203 CLDEVRKKKNGRCG--LEMPCLHVFHGKCIENWLKNSHCCPICRFQMPIS 237
           CL+E+ K++ G  G  L+MPCLHVFHG+CI  WL  SH CP CRF MPI+
Sbjct: 216 CLEEIGKEEKGSEGVVLQMPCLHVFHGECINKWLNTSHYCPTCRFPMPIN 263

[Close]

BLAST of MELO3C019146 vs. TrEMBL
Match: E5GCQ3_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 75/226 (33.19%), Postives = 118/226 (52.21%), Query Frame = 1


Query: 29  PSPIELIGLLFTLRRRCNRFQVLENGERQ---LVEEQEASKVPLCDHQFPVEIFNGDDNS 88
           P+ +E I L F ++ +C  FQV E G      LV E   S+      Q P+ IF   D +
Sbjct: 42  PTLVEQICLKFKVQLKCQHFQVWEGGNGHSTTLVREHIRSQHSFATFQLPISIFKHGDKT 101

Query: 89  LFQYLCCSFENYEPKIDAEVVATALIEQWIGI----RDQLNSRSC--HKVFSMTVNLTIT 148
           L + L   F+ Y   I+ E++A  +I+ W+       DQ N+ +    K++ + + + + 
Sbjct: 102 LKRILFREFKMYGDIINIELLANEIIKHWVRKVEEEEDQENNSNVLFKKIYPLEIMIRL- 161

Query: 149 DVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD-----EDERI-CIICLDEV 208
            +V + +          +    VP  D A++ MLKR+E  +     +DE I C++CL+E+
Sbjct: 162 -LVSKMIRAVQPRLAMIDQPLMVPTSDSAVESMLKRVENEEIMKSGDDESINCVVCLEEI 221

Query: 209 RKKKNGR--CGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISS 238
            K++ G     L+MPCLH+FH +CI  WLK SH CP CRF MPI +
Sbjct: 222 SKEEKGSETTVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPIDN 265

[Close]

BLAST of MELO3C019146 vs. TrEMBL
Match: E5GCQ4_CUCME (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.0e-23
Identity = 72/224 (32.14%), Postives = 120/224 (53.57%), Query Frame = 1


Query: 29  PSPIELIGLLFTLRRRCNRFQVLENGER---QLVEEQEASKVPLCDHQFPVEIFNGDDNS 88
           P+ ++ I L F L+ +C  F   E G      L+ E   S+      Q P+ IF   D +
Sbjct: 43  PALVKQIDLNFKLQVKCQHFGAGEEGSTFATTLLSEHIISQPTFPALQLPISIFKRGDKT 102

Query: 89  LFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ---LNSRSCHKVFSMTVNLTITDV- 148
           L + L   F+ +   ++ E+V   +I+ WI   ++    NSR   +++ + + + +    
Sbjct: 103 LKRLLFQKFQMFRGIVNVELVVDEIIKHWIRKVEEDQENNSRVFAEIYPLEIRIELLVCR 162

Query: 149 VVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRDE-----DERI-CIICLDEVRK 208
           ++  +I +       ++   VP  D A++ MLKR+E  +E     D+ I C+ICL+++ K
Sbjct: 163 MIPAIIDQP------QEVMMVPTSDNAMESMLKRVENNEELMKLGDDSIDCVICLEKIGK 222

Query: 209 --KKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISS 238
             K++GR  L+MPCLH+FH +CI  WLK SH CP CRF MPI++
Sbjct: 223 EEKRSGRVVLQMPCLHMFHEECIRKWLKTSHFCPTCRFSMPINN 260

[Close]

BLAST of MELO3C019146 vs. TAIR10
Match: AT3G15740.1 (AT3G15740.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 42/100 (42.00%), Postives = 51/100 (51.00%), Query Frame = 1


Query: 143 VQYVIGEDGSSFGGED--------FRAVPACDKALKKMLKRLEVRDEDERICIICLDEVR 202
           VQ  IG   S F GED            PA D+A++  L+ L V  E+E  C+IC+D +R
Sbjct: 127 VQVKIGVTVSRFPGEDDHVDVQVQLAVAPANDEAVEMHLETLVV--ENEGYCVICMDNIR 186

Query: 203 KKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMP 235
              +   G  MPC HVFH  C E WL+NS  CP+CR   P
Sbjct: 187 VGSDVEAG-RMPCSHVFHRTCGEEWLRNSGICPVCRALFP 223

[Close]

BLAST of MELO3C019146 vs. TAIR10
Match: AT1G14200.1 (AT1G14200.1 RING/U-box superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 149 EDGSSFGGEDFRAVPACDKALKKMLKRLEVRDEDERI---CIICLDEVRKKKNGRCGLEM 208
           +D  S GG+  R+ PA    ++ M  R+ + ++ E+    C ICLDE  K   G    EM
Sbjct: 71  DDFFSDGGKQGRS-PALKSEVENM-PRVVIGEDKEKYGGSCAICLDEWSK---GDVAAEM 130

Query: 209 PCLHVFHGKCIENWLKNSHCCPICRFQMPI 236
           PC H FH KC+E WL     CP+CR++MP+
Sbjct: 131 PCKHKFHSKCVEEWLGRHATCPMCRYEMPV 155

[Close]

BLAST of MELO3C019146 vs. TAIR10
Match: AT3G14970.1 (AT3G14970.1 RING/U-box superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-11
Identity = 46/166 (27.71%), Postives = 75/166 (45.18%), Query Frame = 1


Query: 72  HQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRSCHKVFS 131
           H+F   +    D    Q + C   +         V T LI+  + ++       C K+  
Sbjct: 67  HEFDKGLLFSGDREQIQVIVCHILDLIKAPRYIDVVTELIDAILDLK------KCDKIS- 126

Query: 132 MTVNLTITDVVVQYVIG---EDGSSFGGEDFRAVPACDKALKKMLKRLEVRDEDERICII 191
              N+   DVV+  ++    +D            PA ++A+++ L+ + V  E+E  C+I
Sbjct: 127 ---NVKEVDVVINVIVWRFPDDDDDDVDVRLAVAPASNEAVEQHLETVVV--ENESWCVI 186

Query: 192 CLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMP 235
           C+D++R   +   G  MPC HVFH  C E+WL+ S  CP+CR   P
Sbjct: 187 CMDKIRIGLDVAAG-RMPCSHVFHRTCGEDWLRCSGICPVCRAMFP 219

[Close]

BLAST of MELO3C019146 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-10
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1


Query: 163 PACDKALKKMLKRLEVRDEDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKN 222
           P   KA    +  +E+ D  E  C+ICL+E + ++  +   EMPC H FHG CIE WL  
Sbjct: 91  PPASKASIDAMPIVEI-DGCEGECVICLEEWKSEETVK---EMPCKHRFHGGCIEKWLGF 150

Query: 223 SHCCPICRFQMPI 236
              CP+CR++MP+
Sbjct: 151 HGSCPVCRYEMPV 159

[Close]

BLAST of MELO3C019146 vs. TAIR10
Match: AT5G02750.1 (AT5G02750.1 RING/U-box superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-10
Identity = 27/56 (48.21%), Postives = 31/56 (55.36%), Query Frame = 1


Query: 186 CIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFGE 242
           C+IC +E+ +   GR   EMPC H FH KCI  WL   + CP CRFQ+P    F E
Sbjct: 214 CVICKEEMSE---GRDVCEMPCQHFFHWKCILPWLSKKNTCPFCRFQLPTDDVFSE 266

[Close]

BLAST of MELO3C019146 vs. NCBI nr
Match: gi|659111483|ref|XP_008455760.1| (PREDICTED: RING finger protein 141-like [Cucumis melo])

HSP 1 Score: 506.5 bits (1303), Expect = 2.6e-140
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1


Query: 1   MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60
           MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE
Sbjct: 1   MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60

Query: 61  EQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ 120
           EQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ
Sbjct: 61  EQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ 120

Query: 121 LNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD 180
           LNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD
Sbjct: 121 LNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD 180

Query: 181 EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFG 240
           EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFG
Sbjct: 181 EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFG 240

Query: 241 EDF 244
           EDF
Sbjct: 241 EDF 243

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BLAST of MELO3C019146 vs. NCBI nr
Match: gi|778697734|ref|XP_011654386.1| (PREDICTED: RING finger protein 141-like [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 4.2e-119
Identity = 207/242 (85.54%), Postives = 223/242 (92.15%), Query Frame = 1


Query: 1   MEYQISQYSTTAVEIDIDLPMSRRIRKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60
           MEYQIS+YSTTAVE+DID+P   +I KHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE
Sbjct: 1   MEYQISRYSTTAVEVDIDVPKWTKIPKHPSPIELIGLLFTLRRRCNRFQVLENGERQLVE 60

Query: 61  EQEASKVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQ 120
           EQE SKVPLCDHQFPVEIFNGD +SLFQYLCCSFENYE KIDAEVVA+ LIEQWI IR+Q
Sbjct: 61  EQEISKVPLCDHQFPVEIFNGDSSSLFQYLCCSFENYESKIDAEVVASVLIEQWIEIRNQ 120

Query: 121 LNSRSCHKVFSMTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD 180
           +NSRS  KVFSMTVNLTITDVV+QYV+GEDGS+FGGED R VPACDKALKKMLKRLE+R+
Sbjct: 121 VNSRSRDKVFSMTVNLTITDVVLQYVVGEDGSTFGGEDHRVVPACDKALKKMLKRLEMRE 180

Query: 181 EDERICIICLDEVRKKKNGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISSGFG 240
           EDER+C+ICLDEV KKKNGR GLEMPCLHVFHGKCIENW KNSHCCPICRF+MPISS   
Sbjct: 181 EDERVCVICLDEVGKKKNGRIGLEMPCLHVFHGKCIENWFKNSHCCPICRFEMPISSDLD 240

Query: 241 ED 243
           ED
Sbjct: 241 ED 242

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BLAST of MELO3C019146 vs. NCBI nr
Match: gi|778730182|ref|XP_011659721.1| (PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 75/234 (32.05%), Postives = 121/234 (51.71%), Query Frame = 1


Query: 20  PMSRRIRKHPSP--IELIGLLFTLRRRCNRFQVLENGER---QLVEEQEASKVPLCDHQF 79
           P S+    H SP  ++ I L   +  +C  FQ  E G+     L+ E   S  P    Q 
Sbjct: 31  PQSQNQTPHNSPTFVKQINLKLKVEVKCQHFQADEEGDTFASTLMIEHIVSHHPFPTFQL 90

Query: 80  PVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRS---CHKVFS 139
           PV +F   + +L + L   F+ +   I+ ++VA  +IE W+   +   + S     +++ 
Sbjct: 91  PVSVFRHGNRTLKRLLFQQFQIFRGIINIQLVADEIIEHWVKKEEDRENNSGVLLEEIYP 150

Query: 140 MTVNLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRD-----EDERI- 199
           + + + +  + + + I +   +        VPA + A++ MLKR+E  +     ED+ I 
Sbjct: 151 LEITIELLLLRMIHAIDQPEETIDQPQVTMVPASESAMESMLKRVEKEEIVKVGEDKSIN 210

Query: 200 CIICLDEVRKKKNGRCG--LEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISS 238
           C+ICL+E+ KK  G  G  L+MPCLH+FH +CI  WLK SH CP CRF MPI++
Sbjct: 211 CVICLEEISKKMKGSEGVVLQMPCLHMFHEECIRTWLKTSHYCPTCRFSMPINN 264

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BLAST of MELO3C019146 vs. NCBI nr
Match: gi|659111001|ref|XP_008455524.1| (PREDICTED: RING-H2 finger protein ATL30-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 78/231 (33.77%), Postives = 118/231 (51.08%), Query Frame = 1


Query: 24  RIRKHPSP-IELIGLLFTLRRRCNRFQVLENG---ERQLVEEQEASKVPLCDHQFPVEIF 83
           R R++ S  ++ I L F ++ +C+ F V E+G       + E  +   PL  ++ P+ IF
Sbjct: 9   RTRQNSSKYVQHIDLNFKVQLKCSHFLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIF 68

Query: 84  NGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGI-------RDQLNSRSCHKVFSM 143
              D +L QYL   F  Y   I+  +VA  LI+ W+           + N+     VF  
Sbjct: 69  KHGDKALEQYLFHKFHVYREFINTTLVADRLIQHWVKRVEEDDHEHQEENNNHDFNVFQK 128

Query: 144 TVNLTITDV--VVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLEVRDEDERI-CIIC 203
              L IT    ++Q  + E            VP  D A++ ML+R+E   +DE I C+IC
Sbjct: 129 IYPLEITLEMRIIQRYVEESPIMI------MVPTSDSAIESMLRRVENDWDDEGINCVIC 188

Query: 204 LDEVRKKK---NGRCGLEMPCLHVFHGKCIENWLKNSHCCPICRFQMPISS 238
           L+E+  K+   + +  L+MPCLH+FHG+CI  WLK SH CP CRF MP ++
Sbjct: 189 LEEISSKEEEESEKSVLQMPCLHMFHGECINKWLKTSHYCPTCRFSMPTNN 233

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BLAST of MELO3C019146 vs. NCBI nr
Match: gi|700188572|gb|KGN43805.1| (hypothetical protein Csa_7G068580 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 79/230 (34.35%), Postives = 116/230 (50.43%), Query Frame = 1


Query: 23  RRIRKHPSPIELIGLLFTLRRRCNRFQVLE---NGERQLVEEQEASKVPLCDHQFPVEIF 82
           R  R  P+  + I L F ++ +C  FQ+ E   +    L++E   S+ P    + P+ I 
Sbjct: 36  RTRRNSPTFFKQIDLNFEVQLKCQHFQIREEETSNTTTLIDEHIVSQHPFATFRLPISIL 95

Query: 83  NGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGI-----RDQLNSRSCHKVFSMTV 142
              D +L   L   F  Y   I+ E +   +I+ W+        DQ NS S  +VF    
Sbjct: 96  EHGDKTLKLLLFREFHMYRDIINIEHLVDEIIKYWVTKVEEEEEDQENSTSS-RVFKKIY 155

Query: 143 NLTITDVVVQYVIGEDGSSFGGEDFRAVPACDKALKKMLKRLE------VRDEDERICII 202
            L IT  ++ + I      +  +    VP  D A++ MLKR+E      + D+D   C+I
Sbjct: 156 RLEITLELLIFQIVRV-MDYQPQVLMMVPTSDSAMESMLKRVENEEIMKLGDDDCIHCVI 215

Query: 203 CLDEVRKKKNGRCG--LEMPCLHVFHGKCIENWLKNSHCCPICRFQMPIS 237
           CL+E+ K++ G  G  L+MPCLHVFHG+CI  WL  SH CP CRF MPI+
Sbjct: 216 CLEEIGKEEKGSEGVVLQMPCLHVFHGECINKWLNTSHYCPTCRFPMPIN 263

The following BLAST results are available for this feature:

BLAST of MELO3C019146 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SHGR9_ARATH	1.0e-08	48.21	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana GN=SGR9 P...	[more]
RDUF1_ARATH	1.0e-08	38.67	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana GN=RDUF1 PE=1 SV=1	[more]
RN181_DANRE	2.6e-07	34.34	E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2	[more]
RDUF2_ARATH	2.6e-07	36.00	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RN181_HUMAN	5.7e-07	33.33	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1	[more]

BLAST of MELO3C019146 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L236_CUCSA	3.0e-119	85.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G419590 PE=4 SV=1	[more]
A0A0A0K493_CUCSA	8.5e-26	32.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G067540 PE=4 SV=1	[more]
A0A0A0K2A5_CUCSA	1.6e-24	34.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G068580 PE=4 SV=1	[more]
E5GCQ3_CUCME	1.8e-23	33.19	Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCQ4_CUCME	4.0e-23	32.14	Hypothetical zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C019146 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15740.1	2.5e-13	42.00	RING/U-box superfamily protein	[more]
AT1G14200.1	2.4e-11	40.00	RING/U-box superfamily protein	[more]
AT3G14970.1	3.1e-11	27.71	RING/U-box superfamily protein	[more]
AT1G26800.1	4.5e-10	41.10	RING/U-box superfamily protein	[more]
AT5G02750.1	5.9e-10	48.21	RING/U-box superfamily protein	[more]

BLAST of MELO3C019146 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111483\|ref\|XP_008455760.1\|	2.6e-140	100.00	PREDICTED: RING finger protein 141-like [Cucumis melo]	[more]
gi\|778697734\|ref\|XP_011654386.1\|	4.2e-119	85.54	PREDICTED: RING finger protein 141-like [Cucumis sativus]	[more]
gi\|778730182\|ref\|XP_011659721.1\|	1.2e-25	32.05	PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus]	[more]
gi\|659111001\|ref\|XP_008455524.1\|	2.3e-24	33.77	PREDICTED: RING-H2 finger protein ATL30-like [Cucumis melo]	[more]
gi\|700188572\|gb\|KGN43805.1\|	2.3e-24	34.35	hypothetical protein Csa_7G068580 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0034402	recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
biological_process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
biological_process	GO:0031990	mRNA export from nucleus in response to heat stress
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019146T1	MELO3C019146T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 186..230 score: 5.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 186..229 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 186..230 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 180..231 score: 5.3
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 173..242 score: 3.2
None	No IPR available	PANTHER	PTHR22763:SF78	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 173..242 score: 3.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 176..235 score: 8.16

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019146	Csa4G419590	Cucumber (Chinese Long) v2	cumeB272
MELO3C019146	CSPI04G18790	Wild cucumber (PI 183967)	cpimeB331
MELO3C019146	Cucsa.358670	Cucumber (Gy14) v1	cgymeB578
MELO3C019146	Lsi01G017460	Bottle gourd (USVL1VR-Ls)	lsimeB158
MELO3C019146	CsGy4G017850	Cucumber (Gy14) v2	cgybmeB286
MELO3C019146	CsaV3_4G029160	Cucumber (Chinese Long) v3	cucmeB337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019146	Silver-seed gourd	carmeB0585
MELO3C019146	Silver-seed gourd	carmeB0945
MELO3C019146	Watermelon (97103) v2	mewmbB535
MELO3C019146	Wax gourd	mewgoB641
MELO3C019146	Cucurbita maxima (Rimu)	cmameB612
MELO3C019146	Cucurbita maxima (Rimu)	cmameB802
MELO3C019146	Cucurbita moschata (Rifu)	cmomeB602
MELO3C019146	Cucurbita moschata (Rifu)	cmomeB786
MELO3C019146	Watermelon (Charleston Gray)	mewcgB527
MELO3C019146	Watermelon (97103) v1	mewmB577
MELO3C019146	Cucurbita pepo (Zucchini)	cpemeB073
MELO3C019146	Cucurbita pepo (Zucchini)	cpemeB461