MELO3C019082 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019082
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Serum response factor-binding protein 1
Location	chr8 : 11459977 .. 11463627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGCATGTAAAATTAAAAGTATTGTCCTTTCCTTCTAACTCTAAAAAAAAAAAATTAAAAGGAGAATTATCGCCGAAGCCACCCTCCCCACGCCGACCGCCACCACCGCTCCAACCAGCAGCCGACTACCAAACGTTATCATCGCATGCACCGGAGCTATCCGCATTAGATCAAAGCCGCGTCGATCACTCTCTCTCTCGCGATCTTGTCGTAGGAAGTTGGATCTTGGAGTTTTTGAGAAAGGTATTCTTATTTTTGTATATTTTGGTTGGGTTTCTCGAAATTTTTTTAATACCCAATTAGTTTAGGCTTGAGTTTAACGATGTACGTTACATTTTGTCGTTAGATTTGAAATTTTGGAAGAGTTGGGTTGCTGTCAAGCCGATTAGAAGCTCGTTTTTTGGCTCTTTTGACATAAATTTGGTTAGGATCTTGGTCATGGATACCCATTAAGTGTTTGGTGCAAAATTAAATTACTCTTGAATTTGGAATGTTAGATTTGAGTTTAGAAGGTCGTTATTGTGCTGTCCAGTGGAGTTCAGGTGATTTTGGCCAGTTCTCCGTAAGGTTATATGCAAATTTACTGAGTTTTCTTATTCCTTGAATACCCATTTGGTTTTGACGTGAAATTAATGTTACCCATAATGTTTTGGATGAAAGATTATAGATTTGGAGGATTTTGAAGAAATTTCTAGCGGAGTTTGGTATCTTTTAGGTATTCGGTAAGTTTTAATGCTTATTCTGTTAATTTTACAATATCCATGAAGTATGGTGTTGCTACTTAATTTACCCATAACCTTTGGATGTTAAGGTTGGGAATTTGAGGTTATTAAGTAGCTATCTAACAATTTTAAGATCGCTTTGGCACTTTGTTGGTGAGTTTTCTTTGGGTTTTGTATGATCTTGGACACCCATTAGAATTCGTTGGGAATTAATGCTTATTTGTACTTTTTGGGTATTAGTTTTGAAGTTCGTTCTTGGCGAATTTTGGGTCATGAGAAAACTTTGGAATCGGTCTTGGATCAAGTTACATTTGGATAAGTTCTCTTGGTGAACATTAACGTGCTGTCTAGTAGGTTGAGGTTAATTTTGACAAGATTTTGGTAAGTAATTGAGGTTTCGTAACTACTCGAAGTGTTGAAGTGTGCTATGATTTAAGTTACAATTCTTAGTTGTGGTTTTCTTGGAGGTTTTTGAGTACCCATTAAGTTGTGGCTTAAATATTGTCTTATTAAATTTTGAGTTGGTTAAGTTTAGGACTCTATTCTTGGTTTAAGTTACAATTCTTGGTTGTGAGAGGACCCCCCACTTTCGACACACAGAATATATATACTATTCTTCTAAGTGTTCCCCACCCTTTACAATTCCCGTGCCGAATTACTCTTTCCTCTCCTCCTATACTGATGCACGATTGGTGGCTAACACTTCCATATCTTAAGATACTATTGAGCTATAACTATAACGTACTGTTGTTTAAAATTATTGATGAAATGTTCTTTCTCTTCCCCTTTCAGCATTCCTCGACTCATTCCTAAAGCTCGGATCAAGCACTTGTTAGAGCTTTAAAAAATTGATTGAAAAGTATGCCACACCGAACACGACCTATGGCTGCACTTCTTGTATTTACTGGTCTCAATGTTGTGCTGGTATCAACCATCACTCCAGTTTATGATTTTGTGTGCTTTCATCCATACTGGGAAAGACGGGTATTTTCTATTATCACTTCCAAGTTATTTGCTTCATATCAAACTAGCATTTTTGTAGGGTTCATCATGTTGCTTTTATGTACATGTTTATGTGCTTATTATACCAATGGTAAAAATGTAATGTTCTGTGTTTGGTGTCAACTCTCGTTGGCATTGTTGGTCCTTTTACCTTTAAAGTGGTGATATGATATATGAACTAGGATATTATAAGGTTTCACTGGGGGGATTGTTTAGTTTCTAGCTGAGTTCGTCACTTGTATGAGAATGTTTTAGTTGTGGAATTGGATTTTCAAGACAAATATATACGATGTACTAGAAGAAAGGGGAGGGGGAATATTTTGAAGGAAACTATTTTATTTTAATAAAAAAATACGATTTCATTGATGTATGAAATAAACAAAAGGGATGGATAGTCCAACGATAATTACAAAAAGATTTCTCATTTGGATACAAAGGAAGCATACGATTTCATATGACCAAAATGCTAGACAGTTTACACCAGCAGATAACATACTGGATGATGACCAACAAAATCTTAATAAAAGAAAACAAGAGGAAGTTGGACGGTGAACACCAATCTAAGAATCAAAGAAAGGGAACATTTCCCTTTATGCCTAAAATTGAACCACGGTAAAAAAGACATCCCATTGAATTCATACAAACATTTTAATTGAAAGTAGTTTTTTAAAAACAAAGGTGAGATTGATCCCTGGACCGTAAGATGTATGCGTGCGAGAAGTAATGGAAGGGGCCTATCGCTGATGAGTGAGTGTTGTGCTGTTATGGGGCTCTAAGTATTGTTGTTAGTTGTTTGGCAGAATTATGGGTAAGGGAGAAGGGAGCCTATGAGTTGGGTTGCTAAGCTCATTATGTAATTTCATACCATCAATGAAATTGTTTCTTATTCAGAAAAAAGAACGAAGTATTGGGATAGAACCTTCTGATCTTCTTTGACTCATTCTTATCTTTCATGAATATGAACTAGTACACAACAAGAACATTCTATGGAAACATGCTTTTAGTCTCATAAGAATGTTATAAAATAATGTTAAACTATCCTGAAAACATTTTTTCTAAACAGCTCCTATACTTCTTCGACCTTGAGATTGGGATCTTGTCCTTGTCACTGAAATGTTGTTTTATATCTTATATGTACCTCATTTAATGTCTTAGCATATTAGCACCTTAGTTTTGCATATTTTAGTTTGCTCTTACCCACCCGCCTGTTTGTGAGTTTTTTGGTTGCATCCACAAAACCTGTTAGTAACATACATTTTATTAATACCAGAGTAACTTCCAAAAAAATATCTCAGTTTTTTGTAATGGATGTTCTCATATTCTGGCTGCAGAGAGAACGACGTCAGCAACAACGTGAAGCTGCTTTAGGGAAAGAGCTTTTAGCAGACAGATAAACGTATGCAGTACCTTTGAGATTGTACATTGCATCTAAGTTCCCCATACTCGATCTTTTTAGGTGGCAGTTTCTCTCATCCTCTTCATCATTTAAGAATTGAAGATAAGAATGGGATAAGAAAGCCCTTTACTTGCCATCTGCAGGATTTATTGTCCACCGATTGCAGATTGTTGGAAAAGACATAGAACTGGACCATTAAATTCACAAGCTATCCTGATTGATATGTCGTAATCAAACTACCTTCCTTTCTGTACTCAATTTTTTTTTTAACTTTTTTGTTAATATCTGCTTTTCTTGAGCACCCGCCTTCCAATGATACAGATAGTTTACACTAAGTTAATATGTTCTTCCACATGACATTTTGACAAAATAGGGCTGAGAATTGATGTTTTTAATTGTGTATAGTCACTATATTACGAATTCATTACCTTCCATGAGAATTGATGTATTGGAACAAATTAGCTGATTGCTTTTTTCTTATTGTGACAATTGAAGATTATGATTGAATCTTTAACCTCAAGGTTATCGTA

mRNA sequence

GCTGCATGTAAAATTAAAAGTATTGTCCTTTCCTTCTAACTCTAAAAAAAAAAAATTAAAAGGAGAATTATCGCCGAAGCCACCCTCCCCACGCCGACCGCCACCACCGCTCCAACCAGCAGCCGACTACCAAACGTTATCATCGCATGCACCGGAGCTATCCGCATTAGATCAAAGCCGCGTCGATCACTCTCTCTCTCGCGATCTTGTCGTAGGAAGTTGGATCTTGGAGTTTTTGAGAAAGCATTCCTCGACTCATTCCTAAAGCTCGGATCAAGCACTTGTTAGAGCTTTAAAAAATTGATTGAAAAGTATGCCACACCGAACACGACCTATGGCTGCACTTCTTGTATTTACTGGTCTCAATGTTGTGCTGGTATCAACCATCACTCCAGTTTATGATTTTGTGTGCTTTCATCCATACTGGGAAAGACGGAGAGAACGACGTCAGCAACAACGTGAAGCTGCTTTAGGGAAAGAGCTTTTAGCAGACAGATAAACGTATGCAGTACCTTTGAGATTGTACATTGCATCTAAGTTCCCCATACTCGATCTTTTTAGGTGGCAGTTTCTCTCATCCTCTTCATCATTTAAGAATTGAAGATAAGAATGGGATAAGAAAGCCCTTTACTTGCCATCTGCAGGATTTATTGTCCACCGATTGCAGATTGTTGGAAAAGACATAGAACTGGACCATTAAATTCACAAGCTATCCTGATTGATATGTCGTAATCAAACTACCTTCCTTTCTGTACTCAATTTTTTTTTTAACTTTTTTGTTAATATCTGCTTTTCTTGAGCACCCGCCTTCCAATGATACAGATAGTTTACACTAAGTTAATATGTTCTTCCACATGACATTTTGACAAAATAGGGCTGAGAATTGATGTTTTTAATTGTGTATAGTCACTATATTACGAATTCATTACCTTCCATGAGAATTGATGTATTGGAACAAATTAGCTGATTGCTTTTTTCTTATTGTGACAATTGAAGATTATGATTGAATCTTTAACCTCAAGGTTATCGTA

Coding sequence (CDS)

ATGCCACACCGAACACGACCTATGGCTGCACTTCTTGTATTTACTGGTCTCAATGTTGTGCTGGTATCAACCATCACTCCAGTTTATGATTTTGTGTGCTTTCATCCATACTGGGAAAGACGGAGAGAACGACGTCAGCAACAACGTGAAGCTGCTTTAGGGAAAGAGCTTTTAGCAGACAGATAA

Protein sequence

MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLADR*

Homology

[Close]

BLAST of MELO3C019082 vs. TrEMBL
Match: A0A0A0KYV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431930 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 8  MAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLADR 62
          M ALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERR+QQREAALGKELLADR
Sbjct: 1  MTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQQREAALGKELLADR 54

[Close]

BLAST of MELO3C019082 vs. TrEMBL
Match: M1AFB9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401008361 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-20
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAAL 54
          MPHR RPMA LL+FTGLNVVLVSTITPVYDFVCFHPYWERRRERR+Q+REAAL
Sbjct: 1  MPHRARPMAGLLLFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQEREAAL 53

[Close]

BLAST of MELO3C019082 vs. TrEMBL
Match: K4D284_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-20
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAAL 54
          MPHR RPMA LL+FTGLNVVLVSTITPVYDFVCFHPYWERRRE R+Q+REAAL
Sbjct: 1  MPHRARPMAGLLLFTGLNVVLVSTITPVYDFVCFHPYWERRREHRRQEREAAL 53

[Close]

BLAST of MELO3C019082 vs. TrEMBL
Match: A0A068ULZ7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028997001 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.8e-20
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGK 56
          MP+RTRPMAALLVFTGLN +LVSTI PVYDFVCFHPYWERRRERR+++REAAL K
Sbjct: 1  MPNRTRPMAALLVFTGLNAILVSTIEPVYDFVCFHPYWERRRERRRREREAALAK 55

[Close]

BLAST of MELO3C019082 vs. TrEMBL
Match: A0A0V0H5I4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-19
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAAL 54
          MPHR RPMA LL+FTGLNVVLVSTITPVYDFVCFHPYWERRRE R Q+REAAL
Sbjct: 1  MPHRARPMAGLLLFTGLNVVLVSTITPVYDFVCFHPYWERRREHRCQEREAAL 53

[Close]

BLAST of MELO3C019082 vs. TAIR10
Match: AT5G09225.1 (AT5G09225.1 unknown protein)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-19
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAA 53
          MPHRTRP+  LL+FTG+N VLV TITPVYDFVCF PYWERRRER +Q+REAA
Sbjct: 1  MPHRTRPLKGLLLFTGINFVLVQTITPVYDFVCFLPYWERRRERIRQEREAA 52

[Close]

BLAST of MELO3C019082 vs. NCBI nr
Match: gi|659111357|ref|XP_008455709.1| (PREDICTED: uncharacterized protein LOC103495817 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLAD 60
          MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLAD
Sbjct: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLAD 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C019082 vs. NCBI nr
Match: gi|778694737|ref|XP_011653856.1| (PREDICTED: uncharacterized protein LOC101220293 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLAD 60
          MPHRTRPM ALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERR+QQREAALGKELLAD
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQQREAALGKELLAD 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]

BLAST of MELO3C019082 vs. NCBI nr
Match: gi|697128932|ref|XP_009618520.1| (PREDICTED: uncharacterized protein LOC104110688 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAAL 54
          MPHRTRPMAALL+FTGLNVVLVSTITPVYDFVCFHPYWERRRERR+Q+REAAL
Sbjct: 22 MPHRTRPMAALLLFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQEREAAL 74

[Close]

BLAST of MELO3C019082 vs. NCBI nr
Match: gi|697128934|ref|XP_009618521.1| (PREDICTED: uncharacterized protein LOC104110688 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAAL 54
          MPHRTRPMAALL+FTGLNVVLVSTITPVYDFVCFHPYWERRRERR+Q+REAAL
Sbjct: 1  MPHRTRPMAALLLFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQEREAAL 53

[Close]

BLAST of MELO3C019082 vs. NCBI nr
Match: gi|700199555|gb|KGN54713.1| (hypothetical protein Csa_4G431930 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-21
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 8  MAALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRQQQREAALGKELLADR 62
          M ALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERR+QQREAALGKELLADR
Sbjct: 1  MTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRRERRRQQREAALGKELLADR 54

The following BLAST results are available for this feature:

BLAST of MELO3C019082 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYV7_CUCSA	2.1e-21	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G431930 PE=4 SV=1	[more]
M1AFB9_SOLTU	1.8e-20	90.57	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401008361 PE=4 SV=1	[more]
K4D284_SOLLC	6.8e-20	88.68	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A068ULZ7_COFCA	6.8e-20	85.45	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028997001 PE=4 SV=1	[more]
A0A0V0H5I4_SOLCH	2.0e-19	88.68	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of MELO3C019082 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09225.1	1.8e-19	78.85	unknown protein	[more]

BLAST of MELO3C019082 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111357\|ref\|XP_008455709.1\|	4.8e-27	100.00	PREDICTED: uncharacterized protein LOC103495817 [Cucumis melo]	[more]
gi\|778694737\|ref\|XP_011653856.1\|	4.1e-26	96.72	PREDICTED: uncharacterized protein LOC101220293 [Cucumis sativus]	[more]
gi\|697128932\|ref\|XP_009618520.1\|	2.3e-21	94.34	PREDICTED: uncharacterized protein LOC104110688 isoform X1 [Nicotiana tomentosif...	[more]
gi\|697128934\|ref\|XP_009618521.1\|	2.3e-21	94.34	PREDICTED: uncharacterized protein LOC104110688 isoform X2 [Nicotiana tomentosif...	[more]
gi\|700199555\|gb\|KGN54713.1\|	3.0e-21	96.30	hypothetical protein Csa_4G431930 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU64883	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019082T1	MELO3C019082T1	mRNA
MELO3C019082T2	MELO3C019082T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU64883	MU64883	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019082	Csa4G431930	Cucumber (Chinese Long) v2	cumeB272
MELO3C019082	Cla97C04G072130	Watermelon (97103) v2	mewmbB535
MELO3C019082	CSPI04G19220	Wild cucumber (PI 183967)	cpimeB331
MELO3C019082	Cucsa.068390	Cucumber (Gy14) v1	cgymeB068
MELO3C019082	CmaCh07G010860	Cucurbita maxima (Rimu)	cmameB802
MELO3C019082	CmaCh03G001360	Cucurbita maxima (Rimu)	cmameB612
MELO3C019082	CmoCh03G001580	Cucurbita moschata (Rifu)	cmomeB608
MELO3C019082	CmoCh07G011350	Cucurbita moschata (Rifu)	cmomeB786
MELO3C019082	Cp4.1LG10g11140	Cucurbita pepo (Zucchini)	cpemeB063
MELO3C019082	CsGy4G018160	Cucumber (Gy14) v2	cgybmeB286
MELO3C019082	Carg13306	Silver-seed gourd	carmeB0585
MELO3C019082	CsaV3_4G029620	Cucumber (Chinese Long) v3	cucmeB337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019082	Wax gourd	mewgoB641
MELO3C019082	Cucurbita pepo (Zucchini)	cpemeB461
MELO3C019082	Bottle gourd (USVL1VR-Ls)	lsimeB158