CmoCh07G011350 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G011350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA06g22990D protein
Location	Cmo_Chr07 : 6020219 .. 6020725 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGTCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGTACTTTCAATTATCACTTACTCAAGTTATTTGCATGATATCTACATAGCATCTTTGTTAGGGTTCATCATGCCGTCTTTTTATGTACATGGATACTAGCTTATTATACTTGTGGTAAATATGTATTGTTCTCTGTGTTTGGTGTCAATTCACATTGTCATTGTTTCTCTGGCTGGCTTTAGTGTTGTGATTGAATGTCTGAATCAGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

mRNA sequence

ATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGTCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

Coding sequence (CDS)

ATGCCGCACCGAACACGACCTATGACTGCGCTCCTTGTGTTTACTGGTCTCAATGTGGTGCTGGTATCAACCATCACACCAGTCTATGATTTTGTATGCTTTCATCCATATTGGGAAAGAAGGGATATTTGTAAGGTTTCACTGGAGAAGGTAAAGTTGCAGTTGGCTGAGGGATTGTTAGCTTCTAGTTGTGAGAACTATAGAGTCTGGACTATGTACTGGGAGAAGATAGAGTGGGGAATAATTTTGAGGAAACTCGAAGAGCAATTATGCTCACAGAGTGCTGATGTTCTTGAGTGA

Homology

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BLAST of CmoCh07G011350 vs. TrEMBL
Match: A0A067K479_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18418 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-15
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICK---VSLEKVKLQLAE 58
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCF PYWERRD       S+E+++  L++
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFLPYWERRDSTNSGGKSIEELECDLSD 60

[Close]

BLAST of CmoCh07G011350 vs. TrEMBL
Match: A0A0D3HHW7_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVK 53
          MPHR RPMT LL+FTG+N+VL++TITPVYDFVCFHPYWERR++ K S++  K
Sbjct: 1  MPHRARPMTGLLLFTGVNLVLLNTITPVYDFVCFHPYWERRNVVKRSVKHYK 52

[Close]

BLAST of CmoCh07G011350 vs. TrEMBL
Match: A0A061DIY8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_001457 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLE 50
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCF PYWERR  C+ +L+
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFLPYWERR--CRSTLK 47

[Close]

BLAST of CmoCh07G011350 vs. TrEMBL
Match: A0A0D3HR43_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICKVSLEKVKLQLAEGLL 60
          MPH  RPMT LL+FTG+N+VL++TITPVYDFVCFHPYWERR++ K S++  K  +   LL
Sbjct: 1  MPHHARPMTGLLLFTGVNLVLLNTITPVYDFVCFHPYWERRNVVKRSVKHYKPMVLYKLL 60

Query: 61 ASSCENY 68
                Y
Sbjct: 61 NDFIPRY 67

[Close]

BLAST of CmoCh07G011350 vs. TrEMBL
Match: A0A0J8CSZ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062970 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALL+FTGLNVVLVS+ITPVYD+VCFHPYWERR
Sbjct: 1  MPHRTRPMTALLLFTGLNVVLVSSITPVYDYVCFHPYWERR 41

[Close]

BLAST of CmoCh07G011350 vs. TAIR10
Match: AT5G09225.1 (AT5G09225.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-14
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRP+  LL+FTG+N VLV TITPVYDFVCF PYWERR
Sbjct: 1  MPHRTRPLKGLLLFTGINFVLVQTITPVYDFVCFLPYWERR 41

[Close]

BLAST of CmoCh07G011350 vs. NCBI nr
Match: gi|778694737|ref|XP_011653856.1| (PREDICTED: uncharacterized protein LOC101220293 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]

BLAST of CmoCh07G011350 vs. NCBI nr
Match: gi|1009170767|ref|XP_015866373.1| (PREDICTED: uncharacterized protein LOC107403960 [Ziziphus jujuba])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPMTALLVFTGLNV+LVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMTALLVFTGLNVILVSTITPVYDFVCFHPYWERR 41

[Close]

BLAST of CmoCh07G011350 vs. NCBI nr
Match: gi|643718717|gb|KDP29843.1| (hypothetical protein JCGZ_18418 [Jatropha curcas])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-15
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERRDICK---VSLEKVKLQLAE 58
          MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCF PYWERRD       S+E+++  L++
Sbjct: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFLPYWERRDSTNSGGKSIEELECDLSD 60

[Close]

BLAST of CmoCh07G011350 vs. NCBI nr
Match: gi|659111357|ref|XP_008455709.1| (PREDICTED: uncharacterized protein LOC103495817 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-15
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPM ALLVFTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 1  MPHRTRPMAALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 41

[Close]

BLAST of CmoCh07G011350 vs. NCBI nr
Match: gi|697128932|ref|XP_009618520.1| (PREDICTED: uncharacterized protein LOC104110688 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1


Query: 1  MPHRTRPMTALLVFTGLNVVLVSTITPVYDFVCFHPYWERR 42
          MPHRTRPM ALL+FTGLNVVLVSTITPVYDFVCFHPYWERR
Sbjct: 22 MPHRTRPMAALLLFTGLNVVLVSTITPVYDFVCFHPYWERR 62

The following BLAST results are available for this feature:

BLAST of CmoCh07G011350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G011350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067K479_JATCU	2.1e-15	73.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18418 PE=4 SV=1	[more]
A0A0D3HHW7_9ORYZ	1.0e-14	71.15	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
A0A061DIY8_THECC	1.0e-14	85.71	Uncharacterized protein OS=Theobroma cacao GN=TCM_001457 PE=4 SV=1	[more]
A0A0D3HR43_9ORYZ	1.4e-14	58.21	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]
A0A0J8CSZ6_BETVU	1.4e-14	92.68	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062970 PE=4 S...	[more]

BLAST of CmoCh07G011350 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09225.1	1.2e-14	80.49	unknown protein	[more]

BLAST of CmoCh07G011350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694737\|ref\|XP_011653856.1\|	1.4e-15	100.00	PREDICTED: uncharacterized protein LOC101220293 [Cucumis sativus]	[more]
gi\|1009170767\|ref\|XP_015866373.1\|	1.8e-15	97.56	PREDICTED: uncharacterized protein LOC107403960 [Ziziphus jujuba]	[more]
gi\|643718717\|gb\|KDP29843.1\|	3.0e-15	73.33	hypothetical protein JCGZ_18418 [Jatropha curcas]	[more]
gi\|659111357\|ref\|XP_008455709.1\|	5.2e-15	97.56	PREDICTED: uncharacterized protein LOC103495817 [Cucumis melo]	[more]
gi\|697128932\|ref\|XP_009618520.1\|	1.1e-14	95.12	PREDICTED: uncharacterized protein LOC104110688 isoform X1 [Nicotiana tomentosif...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G011350.1	CmoCh07G011350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36392	FAMILY NOT NAMED	coord: 2..41 score: 1.9
None	No IPR available	PANTHER	PTHR36392:SF1	SUBFAMILY NOT NAMED	coord: 2..41 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G011350	Cucsa.068390	Cucumber (Gy14) v1	cgycmoB0104
CmoCh07G011350	CmaCh03G001360	Cucurbita maxima (Rimu)	cmacmoB668
CmoCh07G011350	CmaCh07G010860	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G011350	Csa4G431930	Cucumber (Chinese Long) v2	cmocuB855
CmoCh07G011350	MELO3C019082	Melon (DHL92) v3.5.1	cmomeB786
CmoCh07G011350	CSPI04G19220	Wild cucumber (PI 183967)	cmocpiB863
CmoCh07G011350	Cp4.1LG10g11140	Cucurbita pepo (Zucchini)	cmocpeB805
CmoCh07G011350	MELO3C019082.2	Melon (DHL92) v3.6.1	cmomedB891
CmoCh07G011350	CsaV3_4G029620	Cucumber (Chinese Long) v3	cmocucB1005
CmoCh07G011350	Cla97C04G072130	Watermelon (97103) v2	cmowmbB862
CmoCh07G011350	CsGy4G018160	Cucumber (Gy14) v2	cgybcmoB542
CmoCh07G011350	Carg13306	Silver-seed gourd	carcmoB0795

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G011350	CmoCh03G001580	Cucurbita moschata (Rifu)	cmocmoB462

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G011350	Wax gourd	cmowgoB1056
CmoCh07G011350	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G011350	Bottle gourd (USVL1VR-Ls)	cmolsiB779