MELO3C018875 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018875
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription initiation factor TFIID subunit 6
Locationchr1 : 3549945 .. 3551730 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACTCAACATTATGGTGCAATTCGAGGATTAGCAGCCCTAGGGATGAATGTGGTATGCGATTTTTTTTTTACCTGCTTCTTTATCTTTAATTAGACTATCTAGAGGGTTGGAGGTTAGAGGAGTCGAAAGAAAACATGACTGCATGGAAATAAAACTAACGTGTTTGTCTCAAAAGTATGAAAAACAATGCTATTATAGAGAAGGGAAGTGATCATGTTTATATAGTTTGCCTCTGCTATTTTAGATGAACAAGAAAAATCAGGTTGAACTTAAAAGATGATTTAGATTAGCGTGCTGATTTTATCTGATTAGAATTTTTACCTCGATGAGTTCGTCCTTGTTTGATTTTCTAACCTTTATTTCAAGTTTGATATGATCGAATTGAGAATAGTCTAGCTTGATATTTCTTTTTATCTCACCAACACTAAGAGAATCCGATCTGTTCGACCTGCAGCTTCATTTCTTTAATTTAAACATCTATTAGTTTCTCGCTACCAAATAAAATTCTATACCAGAAAAGCCTTTGACCTTTGAATTCATTCCATGTTCAGACGTATGATACTGATGATCGCTTGTCTTTCAAGTGCAAAAGTAAACATATGAAAAGTAAAAAGGTCTTTTGACTTCATAATTATTTGTAGTATTTAATATTTTATAGGTTCATCTTCTTATACTACCAAATCTTGAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTAGTGAGTTATTTTGTTAGGATCTGGTTTAACATTCTTAGTTTCTTACCTGAATATTCTGTAGGAACTGATGTAATCTTTTAACGATACAAAATGGCTTACAGCGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAGTAAGCTCTTGAAACTTTCTTTGAATCAAACAACTGAGATACAAAATACTATCAACTTTAGTTTACTTTTCTCTAAGCTGGAAATTTTTATTCCTTGAATGACGTAGATTTTCAGCACCTACTTCTCTATTGAATTTTTGTTTCTGAGTTTTATGCAATGAATGGTACTACATACAGAAACGTCCCCATTAGTATACCTTGAATTATATGAATAGCGAGCCTGCTGAACTAAGAAGTAATTATTTGATGTGTCCTAATTGTTGCATGCTGATATATTCTCTTGTTTAAGTGACCAAATCCTTCAAATCCTACAACTTTTGGAATCTTCTAGTTCTTGATGCAAGTTGTATACTGCTTGAAGTTGACATGCTAAAATTCATTTTTTTTATTCTGCACGCATAATATTAGACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAA

mRNA sequence

GACTCAACATTATGGTGCAATTCGAGGATTAGCAGCCCTAGGGATGAATGTGGTTCATCTTCTTATACTACCAAATCTTGAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTACGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAA

Coding sequence (CDS)

ATGAATGTGGTTCATCTTCTTATACTACCAAATCTTGAGCCATATCTGGGACTTCTGGAACCTGAGATGCTTCTTGCTAGTCAAAAGAATGAGATGAAGAGGCATGAAGCGTGGCGTGTTTATGGAGCCTTGCTACGAGCCGTCGGTCAGTGCATATATGAACGCGTCAAGATTTTTCCTCCTTTGCCTAGTACGCCTGCAGGTTCTGTTTTGCGAACAAATGCAAGGATTATCACCACCACTTTCCCAAACAAACGCAAGGCAAATGCAGACTACTTAGAAGGGCAGCCTCCTCTCAAGAGGATGTTAATTGATGGTCCAATGGGGGTCATGTTAACTAATTCATCGGCATCACACATGGAAGGAACAGTTGTTCCGGCTGCCTCTGGCAATTCCAATGTGGTTTCGCCTACATCTTCAGGACAGATGCAAAATGAAACTATATCATCAGGCAGCACTAGTAGAAAGGGGAAGCATGATGATCAAATTCTTAAAAGATCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAAGTTGTTAACATCTATGTTAGATTTGTTTGGTGAAAGTATGTTCTGCTTCATTCCTGCTCCTGAATTGTCTCTGTTCTTATAA

Protein sequence

MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCFIPAPELSLFL*
Homology
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BLAST of MELO3C018875 vs. Swiss-Prot
Match: TAF6_ARATH (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-40
Identity = 102/216 (47.22%), Postives = 136/216 (62.96%), Query Frame = 1 

Query: 3   VVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPL 62
           VV LLIL NLEPYL LLEPE+    QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPL
Sbjct: 339 VVRLLILSNLEPYLSLLEPELNAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPL 398

Query: 63  PSTPAGSVL---RTNARIITTTFPNKRKANADYLEGQPPLKRML-IDGPMGVMLTNSSAS 122
           PS P+ S L   +   +II+T  P+KRK + D  E Q P KR++ +DGP GV   + S S
Sbjct: 399 PS-PSPSFLHKGKGKGKIISTD-PHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGS 458

Query: 123 HMEGTVVPAASGN--SNVVSPTSSGQMQNETISSGSTSRKGKHDD----QILKRSAVLSQ 182
                  P  + N   N V P+SS Q  +   ++ S SR GK  +    + +   A+L Q
Sbjct: 459 APMQVDNPVENDNPPQNSVQPSSSEQASD---ANESESRNGKVKESGRSRAITMKAILDQ 518

Query: 183 VWKEDLNSGKLLTSMLDLFGESMFCFIPAPELSLFL 209
           +WK+DL+SG+LL  + +L+G+ +  FIP+ E+S+FL
Sbjct: 519 IWKDDLDSGRLLVKLHELYGDRILPFIPSTEMSVFL 549

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BLAST of MELO3C018875 vs. Swiss-Prot
Match: TAF6B_ARATH (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-26
Identity = 77/208 (37.02%), Postives = 106/208 (50.96%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           +N+V  L+LPNL PYL LL PEM L  QK E KRH AW VYGAL+ A G+C+YER+K   
Sbjct: 347 LNMVRFLVLPNLGPYLLLLLPEMGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSE 406

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
            L S P  SV +TN + +T+   +KRKA++D L  QPPLK++ +    G++  +S+   M
Sbjct: 407 TLLSPPTSSVWKTNGK-LTSPRQSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQM 466

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
            GT       +++     +       TI+  +++  G   D                   
Sbjct: 467 RGTTTVPQQSHTDA---DARHHNSPSTIAPKTSAAAGTDVD------------------- 526

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
              L  + + FGESM  F P  ELS FL
Sbjct: 527 -NYLFPLFEYFGESMLMFTPTHELSFFL 527

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BLAST of MELO3C018875 vs. TrEMBL
Match: A0A0A0K1B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.5e-108
Identity = 199/208 (95.67%), Postives = 203/208 (97.60%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLA+QKNEMKRHEAW VYGALLRAVGQCIYER+KIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PL STPAGSVLRTNAR ITTTFPNKRKANADYLEGQPPLKRM IDGPMGVMLTNSSASHM
Sbjct: 397 PLLSTPAGSVLRTNARTITTTFPNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EGTVVPAASGNSN+VSPTSSGQMQNE ISSGSTSRKGKHDDQILK+SAVLSQVWKEDLNS
Sbjct: 457 EGTVVPAASGNSNLVSPTSSGQMQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESMFCFIPAPELSLFL
Sbjct: 517 GKLLTSMLDLFGESMFCFIPAPELSLFL 544

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BLAST of MELO3C018875 vs. TrEMBL
Match: A0A0A0KEI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.8e-94
Identity = 176/208 (84.62%), Postives = 191/208 (91.83%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLA+QKNEMKRHEAWRVYGALLRAVGQCIY+ VKIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PLPS PAGS+LRTNAR+ITTTF NKRK NAD+LEGQPPLK+M++D PMGVM TNSSASHM
Sbjct: 397 PLPSMPAGSILRTNARVITTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EG V PA+S NS+++ PTSS  +QNETI  GS SRKGK+DDQILKRSAVLSQVWKEDL S
Sbjct: 457 EGAVNPASSSNSSLILPTSSQPLQNETI-PGSNSRKGKYDDQILKRSAVLSQVWKEDLKS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESM CFIPAPELS+FL
Sbjct: 517 GKLLTSMLDLFGESMLCFIPAPELSMFL 543

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BLAST of MELO3C018875 vs. TrEMBL
Match: M5WT17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003876mg PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.9e-60
Identity = 122/208 (58.65%), Postives = 156/208 (75.00%), Query Frame = 1 

Query: 2   NVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPP 61
           +VV LL+LPNLE YL LLEPE+LL  QKNEMKRHEAWRVYGALL A GQCIY+R+K+FP 
Sbjct: 339 SVVRLLVLPNLETYLRLLEPELLLDKQKNEMKRHEAWRVYGALLNAAGQCIYDRLKMFPL 398

Query: 62  LPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHME 121
           LPS    S   T+ R+IT   PNKRK + +++E QPPLK++  DGP G++ TNSS SHME
Sbjct: 399 LPSPAPQSFWSTSQRVIT--MPNKRKGSVEHMEEQPPLKKIATDGPTGLVPTNSSPSHME 458

Query: 122 GTV-VPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 181
             +  PA SG+ +   P+SSGQM NE +S+ S SR+ +   + LK+SA+L+QVWK+DLNS
Sbjct: 459 VEIATPAPSGDPDAAPPSSSGQMPNEGVSN-SRSRRDRASGRSLKKSALLTQVWKDDLNS 518

Query: 182 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           G LL S+ +LFGE +  F+PAPE+ LFL
Sbjct: 519 GHLLVSLFELFGEDILSFVPAPEMCLFL 543

[Close]
BLAST of MELO3C018875 vs. TrEMBL
Match: W9RID7_9ROSA (Transcription initiation factor TFIID subunit 6 OS=Morus notabilis GN=L484_004040 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.8e-56
Identity = 125/209 (59.81%), Postives = 150/209 (71.77%), Query Frame = 1 

Query: 2   NVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPP 61
           NVV LLILPNL+PYL LLEPE+LL+ QKNEMKR+EAWRVYGALLRA G CIY+R+KIFPP
Sbjct: 338 NVVRLLILPNLKPYLQLLEPELLLSRQKNEMKRYEAWRVYGALLRAAGNCIYDRLKIFPP 397

Query: 62  LPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHME 121
           L S     + + NA + T T PNKRKA  D  E QPPLKRM IDGP  V  +NSS SH+ 
Sbjct: 398 LQSPVPHPIWKANAGVATIT-PNKRKAIMDDTEQQPPLKRMEIDGPTSVPSSNSSPSHLP 457

Query: 122 G-TVVPAASGNSNV-VSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLN 181
           G T   + SG++N   S  SS QM  E +S      K K + + LK SA+L+QVWK+DLN
Sbjct: 458 GETSAISNSGDTNAGPSSPSSSQMPAEIVS----DTKSKGNCKYLKTSAILTQVWKDDLN 517

Query: 182 SGKLLTSMLDLFGESMFCFIPAPELSLFL 209
           SG LL S+ +LFGES+  FIPAPE+SLF+
Sbjct: 518 SGHLLVSLFELFGESILSFIPAPEMSLFI 541

[Close]
BLAST of MELO3C018875 vs. TrEMBL
Match: A0A061DKS3_THECC (Tata box associated factor ii 59 OS=Theobroma cacao GN=TCM_002259 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 117/208 (56.25%), Postives = 152/208 (73.08%), Query Frame = 1 

Query: 2   NVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPP 61
           NVV LLILPNLEPYL LLEPE+LL  QKNE+KRHEAWRVYGALL A GQCIY+R+KIFPP
Sbjct: 338 NVVRLLILPNLEPYLQLLEPELLLEKQKNEVKRHEAWRVYGALLLAAGQCIYDRLKIFPP 397

Query: 62  LPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM- 121
           LPS P  +V ++  +I+T   PNKRKA+ + LE  P  K++  DGP+G+    SS S + 
Sbjct: 398 LPSPPGHAVWKSREKIVTAV-PNKRKASMEPLEHDPASKKIATDGPIGMASAKSSPSSVQ 457

Query: 122 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 181
           E T  P  S + +V  P++S +M N+     S +R GK D ++LK+SA+L+Q+WK+DLNS
Sbjct: 458 EETAAPHPSSDLDVDQPSTSEKMPND---ERSVNRGGK-DSKVLKKSAILNQIWKDDLNS 517

Query: 182 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           G+ L S+ +LFGE +  FIPAPE+SLFL
Sbjct: 518 GRTLVSLFELFGEGILYFIPAPEMSLFL 540

[Close]
BLAST of MELO3C018875 vs. TAIR10
Match: AT1G04950.1 (AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59)

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 102/216 (47.22%), Postives = 136/216 (62.96%), Query Frame = 1 

Query: 3   VVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPL 62
           VV LLIL NLEPYL LLEPE+    QKN+MK +EAWRVYGALLRA G CI+ R+KIFPPL
Sbjct: 339 VVRLLILSNLEPYLSLLEPELNAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPL 398

Query: 63  PSTPAGSVL---RTNARIITTTFPNKRKANADYLEGQPPLKRML-IDGPMGVMLTNSSAS 122
           PS P+ S L   +   +II+T  P+KRK + D  E Q P KR++ +DGP GV   + S S
Sbjct: 399 PS-PSPSFLHKGKGKGKIISTD-PHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGS 458

Query: 123 HMEGTVVPAASGN--SNVVSPTSSGQMQNETISSGSTSRKGKHDD----QILKRSAVLSQ 182
                  P  + N   N V P+SS Q  +   ++ S SR GK  +    + +   A+L Q
Sbjct: 459 APMQVDNPVENDNPPQNSVQPSSSEQASD---ANESESRNGKVKESGRSRAITMKAILDQ 518

Query: 183 VWKEDLNSGKLLTSMLDLFGESMFCFIPAPELSLFL 209
           +WK+DL+SG+LL  + +L+G+ +  FIP+ E+S+FL
Sbjct: 519 IWKDDLDSGRLLVKLHELYGDRILPFIPSTEMSVFL 549

[Close]
BLAST of MELO3C018875 vs. TAIR10
Match: AT1G54360.2 (AT1G54360.2 TBP-ASSOCIATED FACTOR 6B)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 77/208 (37.02%), Postives = 106/208 (50.96%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           +N+V  L+LPNL PYL LL PEM L  QK E KRH AW VYGAL+ A G+C+YER+K   
Sbjct: 347 LNMVRFLVLPNLGPYLLLLLPEMGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSE 406

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
            L S P  SV +TN + +T+   +KRKA++D L  QPPLK++ +    G++  +S+   M
Sbjct: 407 TLLSPPTSSVWKTNGK-LTSPRQSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQM 466

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
            GT       +++     +       TI+  +++  G   D                   
Sbjct: 467 RGTTTVPQQSHTDA---DARHHNSPSTIAPKTSAAAGTDVD------------------- 526

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
              L  + + FGESM  F P  ELS FL
Sbjct: 527 -NYLFPLFEYFGESMLMFTPTHELSFFL 527

[Close]
BLAST of MELO3C018875 vs. NCBI nr
Match: gi|659110962|ref|XP_008455502.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 414.5 bits (1064), Expect = 1.1e-112
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM
Sbjct: 397 PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS
Sbjct: 457 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESMFCFIPAPELSLFL
Sbjct: 517 GKLLTSMLDLFGESMFCFIPAPELSLFL 544

[Close]
BLAST of MELO3C018875 vs. NCBI nr
Match: gi|778723605|ref|XP_004144526.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus])

HSP 1 Score: 398.7 bits (1023), Expect = 6.4e-108
Identity = 199/208 (95.67%), Postives = 203/208 (97.60%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLA+QKNEMKRHEAW VYGALLRAVGQCIYER+KIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PL STPAGSVLRTNAR ITTTFPNKRKANADYLEGQPPLKRM IDGPMGVMLTNSSASHM
Sbjct: 397 PLLSTPAGSVLRTNARTITTTFPNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EGTVVPAASGNSN+VSPTSSGQMQNE ISSGSTSRKGKHDDQILK+SAVLSQVWKEDLNS
Sbjct: 457 EGTVVPAASGNSNLVSPTSSGQMQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESMFCFIPAPELSLFL
Sbjct: 517 GKLLTSMLDLFGESMFCFIPAPELSLFL 544

[Close]
BLAST of MELO3C018875 vs. NCBI nr
Match: gi|659097009|ref|XP_008449395.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 8.1e-95
Identity = 178/208 (85.58%), Postives = 192/208 (92.31%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLA+QKNEMKRHEAWRVYGALLRAVGQCIY+RVKIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDRVKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PLPS PAGS+LRTNAR+ITTTFPNKRKANAD++ GQ PLK+M++D PMGVM TNSSASHM
Sbjct: 397 PLPSMPAGSILRTNARVITTTFPNKRKANADHIRGQAPLKKMVMDSPMGVMPTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EG V PA+SGNS++V PTSS  +QNE I  GSTSRKGK DDQILKRSAVLSQVWKEDL S
Sbjct: 457 EGAVNPASSGNSSLVLPTSSQPLQNEII-PGSTSRKGKCDDQILKRSAVLSQVWKEDLKS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESM CFIPAPELS+FL
Sbjct: 517 GKLLTSMLDLFGESMLCFIPAPELSMFL 543

[Close]
BLAST of MELO3C018875 vs. NCBI nr
Match: gi|778716397|ref|XP_004140111.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.0e-94
Identity = 176/208 (84.62%), Postives = 191/208 (91.83%), Query Frame = 1 

Query: 1   MNVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFP 60
           MNVVHLLILPNLEPYLGLLEPEMLLA+QKNEMKRHEAWRVYGALLRAVGQCIY+ VKIFP
Sbjct: 337 MNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFP 396

Query: 61  PLPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHM 120
           PLPS PAGS+LRTNAR+ITTTF NKRK NAD+LEGQPPLK+M++D PMGVM TNSSASHM
Sbjct: 397 PLPSMPAGSILRTNARVITTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHM 456

Query: 121 EGTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 180
           EG V PA+S NS+++ PTSS  +QNETI  GS SRKGK+DDQILKRSAVLSQVWKEDL S
Sbjct: 457 EGAVNPASSSNSSLILPTSSQPLQNETI-PGSNSRKGKYDDQILKRSAVLSQVWKEDLKS 516

Query: 181 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           GKLLTSMLDLFGESM CFIPAPELS+FL
Sbjct: 517 GKLLTSMLDLFGESMLCFIPAPELSMFL 543

[Close]
BLAST of MELO3C018875 vs. NCBI nr
Match: gi|645247437|ref|XP_008229836.1| (PREDICTED: transcription initiation factor TFIID subunit 6 [Prunus mume])

HSP 1 Score: 240.4 bits (612), Expect = 2.9e-60
Identity = 123/208 (59.13%), Postives = 157/208 (75.48%), Query Frame = 1 

Query: 2   NVVHLLILPNLEPYLGLLEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPP 61
           +VV LL+LPNLE YL LLEPE+LL  QKNEMKRHEAWRVYGALL A GQCIY+R+K+FP 
Sbjct: 339 SVVRLLVLPNLESYLRLLEPELLLDKQKNEMKRHEAWRVYGALLNAAGQCIYDRLKMFPL 398

Query: 62  LPSTPAGSVLRTNARIITTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHME 121
           LPS    S  RT+ R+IT   PNKRK + +++E QPPLK++  DGP G+  TNSS SHME
Sbjct: 399 LPSPAPKSFWRTSQRVIT--MPNKRKGSVEHMEEQPPLKKIATDGPTGIAPTNSSPSHME 458

Query: 122 -GTVVPAASGNSNVVSPTSSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNS 181
             T  PA SG+++   P+S+GQM NE +S+ S SR+ +   + LK+SA+L+QVWK+DLNS
Sbjct: 459 VETATPAPSGDTDAGPPSSTGQMPNEGVSN-SRSRRDRAAGRSLKKSALLTQVWKDDLNS 518

Query: 182 GKLLTSMLDLFGESMFCFIPAPELSLFL 209
           G LL S+ +LFGE +  F+PAPE+ LFL
Sbjct: 519 GHLLVSLFELFGEDILSFVPAPEMCLFL 543

The following BLAST results are available for this feature:
BLAST of MELO3C018875 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TAF6_ARATH2.6e-4047.22Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 ... [more]
TAF6B_ARATH3.6e-2637.02Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6... [more]
BLAST of MELO3C018875 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1B8_CUCSA4.5e-10895.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1[more]
A0A0A0KEI5_CUCSA2.8e-9484.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1[more]
M5WT17_PRUPE5.9e-6058.65Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003876mg PE=4 SV=1[more]
W9RID7_9ROSA6.8e-5659.81Transcription initiation factor TFIID subunit 6 OS=Morus notabilis GN=L484_00404... [more]
A0A061DKS3_THECC1.5e-5556.25Tata box associated factor ii 59 OS=Theobroma cacao GN=TCM_002259 PE=4 SV=1[more]
BLAST of MELO3C018875 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04950.11.4e-4147.22 TATA BOX ASSOCIATED FACTOR II 59[more]
AT1G54360.22.0e-2737.02 TBP-ASSOCIATED FACTOR 6B[more]
BLAST of MELO3C018875 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110962|ref|XP_008455502.1|1.1e-112100.00PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
gi|778723605|ref|XP_004144526.2|6.4e-10895.67PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus][more]
gi|659097009|ref|XP_008449395.1|8.1e-9585.58PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
gi|778716397|ref|XP_004140111.2|4.0e-9484.62PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus][more]
gi|645247437|ref|XP_008229836.1|2.9e-6059.13PREDICTED: transcription initiation factor TFIID subunit 6 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018875T1MELO3C018875T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10221TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6coord: 1..208
score: 1.3
NoneNo IPR availablePANTHERPTHR10221:SF11TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6Bcoord: 1..208
score: 1.3