Cp4.1LG15g07220 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07220
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 7569663 .. 7573091 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGTGGTCAAATACTACAAAATCCCACAAGCCCCTAAAATCCAAATCTTCCCTCAAAACTAAGCGCACAAGTGTAGGTATTGACGCCCCCATTGTCAAGGACTTCTCTTGATACAGCAGTTTTTCGGCACTGGCTAGCAAACGAAGGTGAAGAGGCTGCAATACCAGAACATGCTCCGGTAGAAGGTTTGTCTCAAATCTGACTAAGATTTTGATTGTTTTGACTCACAAGGCAGGCCGATAGATAGTTTTATTTGGATACCCAAAATGTAATTGACTGAAATTTCGGTAGCAGCCATTTTAGTTGCTAGCAAGTAGCAGATATTTGCGTGTTTGTTGGTTTTGAAGAAGAAACATTTCATCAAGAGGGGTGGGTGTTCAAGGACCCGAATGAAACCCTAACTGTAGTTATTGAAATCAAGAGACAAATGGTAAGTTTGGTTGCTCTAAGAATTGAATTGAGGTTCTATCATCCTTAGATGTGTGTAATGATGTCTATTTAACCTGCAATAACAAACTTCAGAGGAAGTCTCCGAATGGAAAATGAAATAGGAGGCGGAAATGGGAACGGAGAAGGACTCTTTGTTCCCGTCCCCGTCCCACCCTATGGACATCTCTACTTGCATGATCTTAGTGCAACTTTCCTACACTTTTTGCTCTGTTGGTTATGGAGGATTCTGCTAATGTTCAAAGCCTCTCCCATGTTTAGATTTCTTATAATATTTCCAACTGGAAGATAGAATTGGATATGTTTTTTCTCTATTGTTTCTTCCTCTTTCCTTTATAACCCAAGTTATAAAGGATGAGTGTAACAGTCGGGCTAACGGATATTATTTTCTATAGGCTTTTCCTTTCGAGTTTCCCCTCAAAGTTTTTGCTGGATGATGAAAGTCCTACGTCGACTGATTTAGGAAATGATCATGGGTTTATAACCAGAGAATACTCTCTCCATTGGTATGAGGCGGGAAGCCCAAAGCAAAGCCATGAGAGCTTTTATGCTCAAAGTGGACAATATCATACTATTGTGGAAAGTCGTGTTCATTCTAACAGTAAAACGTGTCTGCTAGACAGAGGTTTCCACACCCTTCTAAAAAATGTTTCATTTCCCTCTCCAACCGATGTGGGTCTCACAATCCACCCTCCTTCGAGACCCAGCATCCTCGTTAGCACTTGTTTCCTTCTCCAATCAATGTGGGACCACCCCCAGTCCACTCCCTTTAGGGATTAGCCTCATCGCTGGCACATCGCCCAATGTCGGGCTCTGATAACATTTGTAGCAACCCAAGCCCACCACTAACAGATATTGTCCTCTTTGGACTTTTCCTTCTGGGCTTTCCCTCAAGCTTTTAAAACACGTTTAGGGAGAGATTTCCACACTCTTATAAAGAATGCTTCATTCCCCTCTTCAACCGATGTGGGATCTCATAATGACTTTCAGTTGATGTCAAATTACGAGTTAAGCATACTATTCAAGGAGCCTGTTGTCAGTAGGTCCAGTACAATTCTTTTTAAGAGGCATTACTTATTTTACGTGCTATATATGTTATGAGGTATAAATGTTTGAGCTTACAAGATCAACAGATTGCACACAAGTTCTTAAGATTTTTACTATCATCATCTTGGGCTGACTTATTTTACTATCATCATCAACAGTAACTGATATTAGAATATGAAGTAGAATAGAACTCATCCAAGATTAGATAATTGGTTGAGCCGGTGATGCATATATAACTGGGCTGCATGTATGAACGTGTCAAGACTTTTCCACCTTTGCCTAAATGCCCGCAGGCTCTGTTATGCGGACAAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCACGCTAACTAAATCAGTGGCATTTCAAATGGAAGGAACAACGTTCCAGCTGCCTCTGGCACGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGGGCGAGCATGATGATCAATTTCTTAAAAGGTCAGCTGTTCTATCTCAAGTCTGGAAGGAGGATCTTAATTCTGGAAATTTGTTAAAATCTATGTTAGATTTGTTTGATGAAAGTATCTTCTGCTTCATTCGTGCTTCTGAAATGTAACGGTCCAAGTTCATCGCTAGCCAATATTGTTTTCTTTGGGCTTTCCCTTTTGGGCTTCCCTTTAAGGTTTTTAAACGCGTTTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAACCGACGTGGGATCTCACAATCCACCTCCTTTGGGGCCCAGCGTTCTTGTTGGCATTCGTTCCCTTCTCGCGACCCCCAATCCACCCCCTTCAGGGCCCAACTTCCTTGTGCCCGTGTCCACCCCCTTTGGGACTCAACCGCCTCGCTGGCACATCGCCCAATGTCTGGCTCTGATACCATTTATAACAGCTCAAGCTTACCGCTAGCAGATATTGTTCATTTTGGCCCATTACATAAAGCGGTCAACCTCATGATTTTAAAACGCATCCAAATACTGGTAGTAGTGAGTTTGGGCCATTACATGAAATGTCCCTGTTTTGTAATAACTATCATCTATTTTCAAGTAGAATATATGGTTCATATGGCTATAGAATCAAGCTGAAAAAGGAAAAACATGTTTTATTTCAGTTAAGAAGAACCTCACTCATCTGAATTGATTCATGAATTTACAACCACACCAAGTACACAGCGATTCATGTAATAGCAATCAGAACGCTCAAGTGGCCATTACAGCAGTTTCACGCTCAACAGCCTTCATCAACAAGCTGCCTTCTTCCAGCACCATCTGAACAGGCAAGAACCCCATTCCATTAGCCATCCCAAGCATCATCCTTTTGGTCTCAGTCTTGAACTCATCCAGATCAACTGTTCCATTCAAGTCACGATCAAACTGCAAGAACAGAGCACTATAAACAGAAGAAACCTCATCTGGGTCAAGCTTCACGTCAATTTCAAAGTCGTTCTGTGTCACCCTCAGGCTCTGCAACTCCTCTAGCATCTCGCTATAAGAAAGGAGGCCATCATGGTTGGTGTCAAGGTGAGCAAAGCGTTCTCTAATGAAGGCACCAAAGGCTGCCTCGTCTTCAACAAAGTTGACGATGGTTTCACTGTCCAATATTTCCACACTCATTTCAGCTGCCTCTGATATGGGTCTCTGATGAGCATAAGGATGGGCCAAGCTTCCATATAAATAGGCCTCAGAGACATCAGTGCTCTCTCTGTGCCCATTTTTTTCACCGGCAGAACCAGTGGGAAGTGCCAGTGATGAAGATTCTGACGGCAAATCTTGATTTAACGGACGTGAAAAAGTATGTTCCAATCGAATTT

mRNA sequence

CTCGTGGTCAAATACTACAAAATCCCACAAGCCCCTAAAATCCAAATCTTCCCTCAAAACTAAGCGCACAAGTGTAGGTATTGACGCCCCCATTGTCAAGGACTTCTCTTGATACAGCAGTTTTTCGGCACTGGCTAGCAAACGAAGGTGAAGAGGCTGCAATACCAGAACATGCTCCGGTAGAAGGCTCTGTTATGCGGACAAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCACGCTAACTAAATCAGTGGCATTTCAAATGGAAGGAACAACGTTCCAGCTGCCTCTGGCACGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGGGCGAGCATGATGATCAATTTCTTAAAAGTTAAGAAGAACCTCACTCATCTGAATTGATTCATGAATTTACAACCACACCAAGTACACAGCGATTCATGTAATAGCAATCAGAACGCTCAAGTGGCCATTACAGCAGTTTCACGCTCAACAGCCTTCATCAACAAGCTGCCTTCTTCCAGCACCATCTGAACAGGCAAGAACCCCATTCCATTAGCCATCCCAAGCATCATCCTTTTGGTCTCAGTCTTGAACTCATCCAGATCAACTGTTCCATTCAAGTCACGATCAAACTGCAAGAACAGAGCACTATAAACAGAAGAAACCTCATCTGGGTCAAGCTTCACGTCAATTTCAAAGTCGTTCTGTGTCACCCTCAGGCTCTGCAACTCCTCTAGCATCTCGCTATAAGAAAGGAGGCCATCATGGTTGGTGTCAAGGTGAGCAAAGCGTTCTCTAATGAAGGCACCAAAGGCTGCCTCGTCTTCAACAAAGTTGACGATGGTTTCACTGTCCAATATTTCCACACTCATTTCAGCTGCCTCTGATATGGGTCTCTGATGAGCATAAGGATGGGCCAAGCTTCCATATAAATAGGCCTCAGAGACATCAGTGCTCTCTCTGTGCCCATTTTTTTCACCGGCAGAACCAGTGGGAAGTGCCAGTGATGAAGATTCTGACGGCAAATCTTGATTTAACGGACGTGAAAAAGTATGTTCCAATCGAATTT

Coding sequence (CDS)

ATGCGGACAAATGCAAGAGTTATCACCACCACTTTCCCAAGTAAGATCTTGCAACTTTCTTTGAATGGAACAAATGCAGACTGCTTAGAAGGGCGGGCGCCCCTCAAGAAGATGGTAATTGATTGCGCAATGGGTGTCACGCTAACTAAATCAGTGGCATTTCAAATGGAAGGAACAACGTTCCAGCTGCCTCTGGCACGCCCAATCTGGTTTTGTCTACATCTTCTCCACAGATGCAAGAAAGGGCGAGCATGA

Protein sequence

MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEGTTFQLPLARPIWFCLHLLHRCKKGRA
Homology
[Close]
BLAST of Cp4.1LG15g07220 vs. TrEMBL
Match: A0A0A0K1B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-07
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 1   MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEGT 60
           +RTNAR ITTTFP+K         NAD LEG+ PLK+M ID  MGV LT S A  MEGT
Sbjct: 407 LRTNARTITTTFPNK------RKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGT 459

[Close]
BLAST of Cp4.1LG15g07220 vs. TrEMBL
Match: A0A0A0KEI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-06
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1   MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEG 59
           +RTNARVITTTF +K  +      NAD LEG+ PLKKMV+D  MGV  T S A  MEG
Sbjct: 407 LRTNARVITTTFLNKRKE------NADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEG 458

[Close]
BLAST of Cp4.1LG15g07220 vs. NCBI nr
Match: gi|659110962|ref|XP_008455502.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-08
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1 

Query: 1   MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEGT 60
           +RTNAR+ITTTFP+K         NAD LEG+ PLK+M+ID  MGV LT S A  MEGT
Sbjct: 407 LRTNARIITTTFPNK------RKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGT 459

[Close]
BLAST of Cp4.1LG15g07220 vs. NCBI nr
Match: gi|778723605|ref|XP_004144526.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 1   MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEGT 60
           +RTNAR ITTTFP+K         NAD LEG+ PLK+M ID  MGV LT S A  MEGT
Sbjct: 407 LRTNARTITTTFPNK------RKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGT 459

[Close]
BLAST of Cp4.1LG15g07220 vs. NCBI nr
Match: gi|659097009|ref|XP_008449395.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-07
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 1   MRTNARVITTTFPSKILQLSLNGTNADCLEGRAPLKKMVIDCAMGVTLTKSVAFQMEG 59
           +RTNARVITTTFP+K         NAD + G+APLKKMV+D  MGV  T S A  MEG
Sbjct: 407 LRTNARVITTTFPNK------RKANADHIRGQAPLKKMVMDSPMGVMPTNSSASHMEG 458

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1B8_CUCSA2.3e-0759.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1[more]
A0A0A0KEI5_CUCSA7.5e-0658.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1[more]
BLAST of Cp4.1LG15g07220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110962|ref|XP_008455502.1|6.8e-0859.32PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
gi|778723605|ref|XP_004144526.2|3.4e-0759.32PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus][more]
gi|659097009|ref|XP_008449395.1|7.5e-0758.62PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0006413 translational initiation
cellular_component GO:0005575 cellular_component
cellular_component GO:0000124 SAGA complex
cellular_component GO:0046695 SLIK (SAGA-like) complex
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07220.1Cp4.1LG15g07220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g07220MELO3C018875Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g07220MELO3C018875.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07220CsaV3_7G003000Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07220Bhi05G001244Wax gourdcpewgoB0326
Cp4.1LG15g07220CsGy7G002790Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g07220Carg18051Silver-seed gourdcarcpeB1481
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07220Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07220Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG15g07220Cucumber (Gy14) v1cgycpeB0497
Cp4.1LG15g07220Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g07220Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g07220Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07220Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07220Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07220Wild cucumber (PI 183967)cpecpiB237
Cp4.1LG15g07220Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07220Cucumber (Chinese Long) v2cpecuB233
Cp4.1LG15g07220Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07220Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07220Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07220Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07220Watermelon (97103) v1cpewmB268
Cp4.1LG15g07220Melon (DHL92) v3.5.1cpemeB214
Cp4.1LG15g07220Cucumber (Gy14) v2cgybcpeB187
Cp4.1LG15g07220Silver-seed gourdcarcpeB0281
Cp4.1LG15g07220Silver-seed gourdcarcpeB0484
Cp4.1LG15g07220Cucumber (Chinese Long) v3cpecucB0290
Cp4.1LG15g07220Wax gourdcpewgoB0336