MELO3C018641 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018641
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCecropin-A
Locationchr1 : 1695259 .. 1695885 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAAAGATGGCATTGCAGGGCGGCACCATGTGAGATAGAGAACCCATTCATCTATAGGGGGCAGCGGCGGCGTTGAAGTAGCTCATCGGAGCCTCCGAATAGAGAAACGGTTCAAATTCACAAATCTGAGGTTTGCTGCTATGGGTATTCAGATCGGTGATGACAAACGCATGGTTCTCGCAAGTCAATTAACTTTGGTCCATTGGGGTCACTACCAAGAGACAGATGATAACATACTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAGGTTAACGAAAGAGTGTGCGAGGGCGTCCGCGTTCACGAGGAAGAAGAAACCGCCGTTATGGGTCGGGCTTGCTCGCCCTGAGGCTGACCCAATAACTCAAAAACCAAACTAAAGGAAAATTGTCCAAAATGACCTCTAACGTAAAAAAATTATTTACGATCGATATCTTCTTGAAAACTTGTTTTCTTATTTTTACCCTTTTTCACATATGAATACCAATTGTATTCTCTATTTTTTTTAACCTTAGACTAGCGCACTTGTTCGCTTACCATATTTGAACGATCGTTTGCACTCTTCTTTTCTTCTTATTATGTGACTATTGTTCTCGGTTTTCTC

mRNA sequence

GAGAAAGATGGCATTGCAGGGCGGCACCATGTGAGATAGAGAACCCATTCATCTATAGGGGGCAGCGGCGGCGTTGAAGTAGCTCATCGGAGCCTCCGAATAGAGAAACGGTTCAAATTCACAAATCTGAGGTTTGCTGCTATGGGTATTCAGATCGGTGATGACAAACGCATGGTTCTCGCAAGTCAATTAACTTTGGTCCATTGGGGTCACTACCAAGAGACAGATGATAACATACTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAGGTTAACGAAAGAGTGTGCGAGGGCGTCCGCGTTCACGAGGAAGAAGAAACCGCCGTTATGGGTCGGGCTTGCTCGCCCTGAGGCTGACCCAATAACTCAAAAACCAAACTAAAGGAAAATTGTCCAAAATGACCTCTAACGTAAAAAAATTATTTACGATCGATATCTTCTTGAAAACTTGTTTTCTTATTTTTACCCTTTTTCACATATGAATACCAATTGTATTCTCTATTTTTTTTAACCTTAGACTAGCGCACTTGTTCGCTTACCATATTTGAACGATCGTTTGCACTCTTCTTTTCTTCTTATTATGTGACTATTGTTCTCGGTTTTCTC

Coding sequence (CDS)

ATGGGTATTCAGATCGGTGATGACAAACGCATGGTTCTCGCAAGTCAATTAACTTTGGTCCATTGGGGTCACTACCAAGAGACAGATGATAACATACTGCAAAGTTGCTGGACGTCGCCGAAGTGGAAGACAGGCCGGCGGCTGGAGAAGGTTAACGAAAGAGTGTGCGAGGGCGTCCGCGTTCACGAGGAAGAAGAAACCGCCGTTATGGGTCGGGCTTGCTCGCCCTGA

Protein sequence

MGIQIGDDKRMVLASQLTLVHWGHYQETDDNILQSCWTSPKWKTGRRLEKVNERVCEGVRVHEEEETAVMGRACSP*
Homology
[Close]
BLAST of MELO3C018641 vs. TrEMBL
Match: A0A0A0K404_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062850 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 23 GHYQETDDNILQSCWTSPKWKTGRRLEKVNERVCEGVRVHEEEETAVMGRACS 76
          GHYQET+DNILQSCWTSPKWKTGRRLEKVNER CEGVRVHEEE+TA MGRACS
Sbjct: 9  GHYQETEDNILQSCWTSPKWKTGRRLEKVNERECEGVRVHEEEKTA-MGRACS 60

[Close]
BLAST of MELO3C018641 vs. NCBI nr
Match: gi|700188486|gb|KGN43719.1| (hypothetical protein Csa_7G062850 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 23 GHYQETDDNILQSCWTSPKWKTGRRLEKVNERVCEGVRVHEEEETAVMGRACS 76
          GHYQET+DNILQSCWTSPKWKTGRRLEKVNER CEGVRVHEEE+TA MGRACS
Sbjct: 9  GHYQETEDNILQSCWTSPKWKTGRRLEKVNERECEGVRVHEEEKTA-MGRACS 60

The following BLAST results are available for this feature:
BLAST of MELO3C018641 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K404_CUCSA1.7e-2092.45Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062850 PE=4 SV=1[more]
BLAST of MELO3C018641 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188486|gb|KGN43719.1|2.4e-2092.45hypothetical protein Csa_7G062850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU64325melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018641T1MELO3C018641T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU64325MU64325transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018641Csa7G062850Cucumber (Chinese Long) v2cumeB530
MELO3C018641CsaV3_7G006510Cucumber (Chinese Long) v3cucmeB548
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018641Wild cucumber (PI 183967)cpimeB538
MELO3C018641Watermelon (Charleston Gray)mewcgB176
MELO3C018641Watermelon (97103) v1mewmB207
MELO3C018641Cucurbita pepo (Zucchini)cpemeB217
MELO3C018641Cucurbita pepo (Zucchini)cpemeB604
MELO3C018641Bottle gourd (USVL1VR-Ls)lsimeB247
MELO3C018641Cucumber (Gy14) v2cgybmeB468
MELO3C018641Silver-seed gourdcarmeB0375
MELO3C018641Silver-seed gourdcarmeB0948
MELO3C018641Watermelon (97103) v2mewmbB224
MELO3C018641Wax gourdmewgoB220
MELO3C018641Cucumber (Gy14) v1cgymeB379
MELO3C018641Cucurbita maxima (Rimu)cmameB098
MELO3C018641Cucurbita maxima (Rimu)cmameB455
MELO3C018641Cucurbita moschata (Rifu)cmomeB085
MELO3C018641Cucurbita moschata (Rifu)cmomeB446