MELO3C018506 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018506
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr1 : 723768 .. 724471 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACAAGGTTGCTCTTCCCCTCCTCCTACCCAATCCCCCACCCTCCAAATCCCTCTTCCCCGTCTTCCACCACCAACCCCCTTTACCCTCTTCTCCGTCACCTCCATCACTCACTTTTCCTCCGCCACCACAGTCGCCCCCCTCTTCCTCATCATCCCCCTTAGCCCCTCTTCTCCAAGACCTCCTTCCACACCAACATCCCTCTTCTTCCGCTCAACCCCATCTTCCCAAACCCACTTTCAGAACCCGCACCCGAATCGGTCGGTCTCGTGACCCGAACCGCGGCAAGCCATGGTCACACCACCGTCTCTCCACTCAAGGTCAGCGAATTCTTGATTCTTTACTCAACCCAGAATTCGATTCCTCCTCCTTGGATGAAATTTTACTTCAATTGTTTGAAACCAGTCCCGATGGACTTAATTTCACCTCCGACTCTGTTTCCTTCGACATTTTGGGGATAATCAAGGGCTTGGTGTTTAACAAGAAGAATGAATTAGCCTTGGGTGTTTTTGATTTTGTTCGTAATCGGGAAGATTTTGCATCCATTTTGAGTAATTCTGTGATTGCTGTGATTATTAGTGTACTTGGTAAAGAGGGTCGGGCTTCTTTTGCTGCTTCTCTGCTTCATGAGCTTCGAAATGATGGGGTACATATTGATATTTATGCTTATACTTCTTTGATAACTGCATATGCTAGTAA

mRNA sequence

ATGGCGGACAAGGTTGCTCTTCCCCTCCTCCTACCCAATCCCCCACCCTCCAAATCCCTCTTCCCCGTCTTCCACCACCAACCCCCTTTACCCTCTTCTCCGTCACCTCCATCACTCACTTTTCCTCCGCCACCACAGTCGCCCCCCTCTTCCTCATCATCCCCCTTAGCCCCTCTTCTCCAAGACCTCCTTCCACACCAACATCCCTCTTCTTCCGCTCAACCCCATCTTCCCAAACCCACTTTCAGAACCCGCACCCGAATCGGTCGGTCTCGTGACCCGAACCGCGGCAAGCCATGGTCACACCACCGTCTCTCCACTCAAGGTCAGCGAATTCTTGATTCTTTACTCAACCCAGAATTCGATTCCTCCTCCTTGGATGAAATTTTACTTCAATTGTTTGAAACCAGTCCCGATGGACTTAATTTCACCTCCGACTCTGTTTCCTTCGACATTTTGGGGATAATCAAGGGCTTGGTGTTTAACAAGAAGAATGAATTAGCCTTGGGTGTTTTTGATTTTGTTCGTAATCGGGAAGATTTTGCATCCATTTTGAGTAATTCTGTGATTGCTGTGATTATTAGTGTACTTGGTAAAGAGGGTCGGGCTTCTTTTGCTGCTTCTCTGCTTCATGAGCTTCGAAATGATGGGTAA

Coding sequence (CDS)

ATGGCGGACAAGGTTGCTCTTCCCCTCCTCCTACCCAATCCCCCACCCTCCAAATCCCTCTTCCCCGTCTTCCACCACCAACCCCCTTTACCCTCTTCTCCGTCACCTCCATCACTCACTTTTCCTCCGCCACCACAGTCGCCCCCCTCTTCCTCATCATCCCCCTTAGCCCCTCTTCTCCAAGACCTCCTTCCACACCAACATCCCTCTTCTTCCGCTCAACCCCATCTTCCCAAACCCACTTTCAGAACCCGCACCCGAATCGGTCGGTCTCGTGACCCGAACCGCGGCAAGCCATGGTCACACCACCGTCTCTCCACTCAAGGTCAGCGAATTCTTGATTCTTTACTCAACCCAGAATTCGATTCCTCCTCCTTGGATGAAATTTTACTTCAATTGTTTGAAACCAGTCCCGATGGACTTAATTTCACCTCCGACTCTGTTTCCTTCGACATTTTGGGGATAATCAAGGGCTTGGTGTTTAACAAGAAGAATGAATTAGCCTTGGGTGTTTTTGATTTTGTTCGTAATCGGGAAGATTTTGCATCCATTTTGAGTAATTCTGTGATTGCTGTGATTATTAGTGTACTTGGTAAAGAGGGTCGGGCTTCTTTTGCTGCTTCTCTGCTTCATGAGCTTCGAAATGATGGGTAA

Protein sequence

MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLLQDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNREDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG*

Homology

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BLAST of MELO3C018506 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-44
Identity = 104/220 (47.27%), Postives = 135/220 (61.36%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSP---PSLTFPPPPQSPPSSSSSPLA 60
           MADK+ALPLLLP  P SK     + H      S +P    SL+ PPPP         P+ 
Sbjct: 1   MADKLALPLLLPCTPSSKP----YSHDQNHHISRTPFLTTSLSSPPPP---------PVE 60

Query: 61  PLLQDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLL 120
           PLL D+  HQ+P+S           R RTRIG+SRDPN GKPWS+H LS QGQ++L SL+
Sbjct: 61  PLLHDVFLHQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLI 120

Query: 121 NPEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRN 180
            P FDS  LD +L +LFE   D      +S S ++L  +KGL F+KK +LAL  FD+   
Sbjct: 121 EPNFDSGQLDSVLSELFEPFKD----KPESTSSELLAFLKGLGFHKKFDLALRAFDWFMK 180

Query: 181 REDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           ++D+ S+L NSV+A+IIS+LGKEGR S AA++ + L+ DG
Sbjct: 181 QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDG 203

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BLAST of MELO3C018506 vs. TrEMBL
Match: A0A0A0K4H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.4e-104
Identity = 197/217 (90.78%), Postives = 201/217 (92.63%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MADKV+LPLLLPNPPPSKS FPVFHHQP  PSSP PP LTFPP P    SS+SSPLAPLL
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPHL--SSASSPLAPLL 60

Query: 61  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 120
           QDLLPHQHPSSS QPHLPKPTFRTRTRIGRS DPNRGKPWSHHRLSTQGQRILDSLLNPE
Sbjct: 61  QDLLPHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 180
           FDSSSLDEILLQLFETS DGLNFTSDSVSFDILGIIKGLVF KKNELAL VF FVRNRED
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           FASILSNSV+AVIISVLGKEGRASFAASLLH+LRNDG
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDG 215

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BLAST of MELO3C018506 vs. TrEMBL
Match: M5VJ93_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001449mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-54
Identity = 121/219 (55.25%), Postives = 149/219 (68.04%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MA+++ALPLLL NPPPS   F   HHQ   P++P+PP L  PPPP         P+ PLL
Sbjct: 1   MAEQIALPLLLHNPPPSSRPFFQNHHQNQNPATPTPPPLP-PPPPM--------PVTPLL 60

Query: 61  QDLLPHQHPSS--SAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLN 120
           Q+LL H +PS+  +  P  P    R RTRIG+SRD NRGKPWSHHRLS+QGQ IL S L+
Sbjct: 61  QELLLHPNPSTPQTQNPTSPPTLPRARTRIGKSRDSNRGKPWSHHRLSSQGQHILHSFLD 120

Query: 121 PEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNR 180
           P+FDSS LDE LL L +   D    + DS+S D+LGI+KGL F+KK +LA+ VF++ + R
Sbjct: 121 PQFDSSKLDEQLLGLVDLHRDEFGSSLDSLSLDVLGIVKGLGFHKKFDLAIDVFEWFKKR 180

Query: 181 EDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           ED  SILS SV+AVIIS+LGK GR S A SL   L  DG
Sbjct: 181 EDCDSILSGSVVAVIISILGKVGRVSSATSLFQSLHKDG 210

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BLAST of MELO3C018506 vs. TrEMBL
Match: A0A067K1X1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22476 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-50
Identity = 114/226 (50.44%), Postives = 152/226 (67.26%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPV---FHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLA 60
           M +K+ALPLL  NPPPSK  F V    HHQP LP                 P+ S  P+ 
Sbjct: 1   MTEKLALPLLFSNPPPSKHQFLVQIHCHHQPILP-----------------PTVSQLPIT 60

Query: 61  PLLQDLLPHQHPSSSAQPHLPKP---TFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILD 120
           PLL +LL +Q PSS    HLP P   ++R RTRIG++RDPNRGKPWS+HRLS  G+++L+
Sbjct: 61  PLLPNLLFNQQPSSPQPIHLPTPKNLSYRPRTRIGKARDPNRGKPWSNHRLSPLGEQVLN 120

Query: 121 SLLNPEFDSSSLDEILLQLFETSPDGLNFTS---DSVSFDILGIIKGLVFNKKNELALGV 180
           SL++P F  + LD+IL QLFE   +  + +S   DS+S D+LG+IKGL F KK +LA+ V
Sbjct: 121 SLIDPSFKMTELDKILSQLFEFYQEKSSLSSENVDSLSMDVLGVIKGLGFYKKRDLAMAV 180

Query: 181 FDFVRNREDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           F++VR+R DF  +L+ SV+AVIIS+LGK+G+ S AASL + L+ DG
Sbjct: 181 FEWVRSRSDFELVLNCSVVAVIISMLGKDGKVSLAASLFNNLKKDG 209

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BLAST of MELO3C018506 vs. TrEMBL
Match: A0A061E043_THECC (Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_007183 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.6e-47
Identity = 110/217 (50.69%), Postives = 151/217 (69.59%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MA+++ALPLLLPNPPPSK   P F +Q    +    P+L     P SPP     P  P+L
Sbjct: 1   MAERLALPLLLPNPPPSK---PPFLNQTH--NQRQNPTLL----PNSPP-----PSTPIL 60

Query: 61  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 120
           QDLL  +H     QP  P+   RTRTRIGRSRD NRGKPW+H+RLS QGQ++L+SL++  
Sbjct: 61  QDLLL-RHSVKPQQPIDPQARTRTRTRIGRSRDLNRGKPWTHNRLSPQGQQVLNSLIDSS 120

Query: 121 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 180
           FDS+ LD +L +LFE   +  +  +D ++ ++LGI+KGL F KK++LALGVF++V+ R+D
Sbjct: 121 FDSNQLDSVLAKLFEQYQENPDAKTDFLTAEVLGIVKGLGFYKKHDLALGVFNWVKGRKD 180

Query: 181 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
              +L+NSV+AVI+S+LGK GR S AA+LL+ L  +G
Sbjct: 181 CDLVLNNSVVAVIVSMLGKAGRVSVAANLLNSLHKEG 202

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BLAST of MELO3C018506 vs. TrEMBL
Match: F6H676_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00440 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 106/214 (49.53%), Postives = 140/214 (65.42%), Query Frame = 1


Query: 4   KVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLLQDL 63
           K++LP+LLP PPPSK LF   H    L ++PSPP                 P+ PLLQ+ 
Sbjct: 6   KLSLPVLLPGPPPSKPLFSDHH----LSTTPSPPP----------------PITPLLQNF 65

Query: 64  LPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPEFDS 123
            PH    +   P +P    R R RIG+S+D NRGKPWSH RLS  GQRIL +L++P F+ 
Sbjct: 66  QPHTQTPNPQSPIIP----RRRRRIGKSQDANRGKPWSHGRLSPPGQRILQTLIDPTFNL 125

Query: 124 SSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNREDFAS 183
           + +DE+LL+LFE  P   +F+ +S+S D+LGI+KGL F KK + AL VF++VRNR++   
Sbjct: 126 AQIDELLLELFEQQPGESDFSVESLSLDVLGIVKGLGFYKKCDTALRVFEWVRNRKESEL 185

Query: 184 ILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           +L+ S+IAVIIS+LGK GR S AASLLH L  DG
Sbjct: 186 LLNGSIIAVIISILGKGGRVSAAASLLHNLCKDG 195

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BLAST of MELO3C018506 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-45
Identity = 104/220 (47.27%), Postives = 135/220 (61.36%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSP---PSLTFPPPPQSPPSSSSSPLA 60
           MADK+ALPLLLP  P SK     + H      S +P    SL+ PPPP         P+ 
Sbjct: 1   MADKLALPLLLPCTPSSKP----YSHDQNHHISRTPFLTTSLSSPPPP---------PVE 60

Query: 61  PLLQDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLL 120
           PLL D+  HQ+P+S           R RTRIG+SRDPN GKPWS+H LS QGQ++L SL+
Sbjct: 61  PLLHDVFLHQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLI 120

Query: 121 NPEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRN 180
            P FDS  LD +L +LFE   D      +S S ++L  +KGL F+KK +LAL  FD+   
Sbjct: 121 EPNFDSGQLDSVLSELFEPFKD----KPESTSSELLAFLKGLGFHKKFDLALRAFDWFMK 180

Query: 181 REDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           ++D+ S+L NSV+A+IIS+LGKEGR S AA++ + L+ DG
Sbjct: 181 QKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDG 203

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BLAST of MELO3C018506 vs. NCBI nr
Match: gi|659110047|ref|XP_008455020.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-119
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL
Sbjct: 17  MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 76

Query: 61  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 120
           QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE
Sbjct: 77  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 136

Query: 121 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 180
           FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED
Sbjct: 137 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 196

Query: 181 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG
Sbjct: 197 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 233

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BLAST of MELO3C018506 vs. NCBI nr
Match: gi|449438627|ref|XP_004137089.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 2.0e-104
Identity = 197/217 (90.78%), Postives = 201/217 (92.63%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MADKV+LPLLLPNPPPSKS FPVFHHQP  PSSP PP LTFPP P    SS+SSPLAPLL
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPHL--SSASSPLAPLL 60

Query: 61  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 120
           QDLLPHQHPSSS QPHLPKPTFRTRTRIGRS DPNRGKPWSHHRLSTQGQRILDSLLNPE
Sbjct: 61  QDLLPHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 180
           FDSSSLDEILLQLFETS DGLNFTSDSVSFDILGIIKGLVF KKNELAL VF FVRNRED
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           FASILSNSV+AVIISVLGKEGRASFAASLLH+LRNDG
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDG 215

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BLAST of MELO3C018506 vs. NCBI nr
Match: gi|700188631|gb|KGN43864.1| (hypothetical protein Csa_7G071530 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 2.0e-104
Identity = 197/217 (90.78%), Postives = 201/217 (92.63%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MADKV+LPLLLPNPPPSKS FPVFHHQP  PSSP PP LTFPP P    SS+SSPLAPLL
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPHL--SSASSPLAPLL 60

Query: 61  QDLLPHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNPE 120
           QDLLPHQHPSSS QPHLPKPTFRTRTRIGRS DPNRGKPWSHHRLSTQGQRILDSLLNPE
Sbjct: 61  QDLLPHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 FDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRED 180
           FDSSSLDEILLQLFETS DGLNFTSDSVSFDILGIIKGLVF KKNELAL VF FVRNRED
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           FASILSNSV+AVIISVLGKEGRASFAASLLH+LRNDG
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDG 215

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BLAST of MELO3C018506 vs. NCBI nr
Match: gi|1009125603|ref|XP_015879698.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Ziziphus jujuba])

HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 125/227 (55.07%), Postives = 156/227 (68.72%), Query Frame = 1


Query: 1   MADKVALPLLLPNPP-PSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPL 60
           MA+K+ALPLLLPNPP PSK LFP     P   + PS                SS P+APL
Sbjct: 1   MAEKLALPLLLPNPPSPSKPLFPSHQRNPTTTTIPS----------------SSPPIAPL 60

Query: 61  LQDLLPHQH----PSSSAQP-----HLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQ 120
           L D L H+H    P+S   P     H+P P  RTRTRIG+SRDPNRGKPWS+HRLS +GQ
Sbjct: 61  LHDFLLHEHSNSNPNSKTPPQPHKLHIPAPIPRTRTRIGKSRDPNRGKPWSNHRLSAKGQ 120

Query: 121 RILDSLLNPEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALG 180
           +IL+SL++ +F SS+LD++LLQL++T  D +    +S+S DILGIIKGL F KK +LAL 
Sbjct: 121 QILNSLIDSKFVSSNLDQLLLQLYDTHKDVVGSGIESLSLDILGIIKGLGFYKKCDLALS 180

Query: 181 VFDFVRNREDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           VF++VRNR+D  SIL  SV+AV+IS+LGKEGR S AASL H L  +G
Sbjct: 181 VFEWVRNRDDCESILDGSVVAVLISMLGKEGRVSAAASLFHNLHKNG 211

[Close]

BLAST of MELO3C018506 vs. NCBI nr
Match: gi|645261687|ref|XP_008236415.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Prunus mume])

HSP 1 Score: 221.5 bits (563), Expect = 1.5e-54
Identity = 121/219 (55.25%), Postives = 149/219 (68.04%), Query Frame = 1


Query: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60
           MA+++ALPLLL NPPPS   F   HHQ   P++P+PP L  PPPP         P+ PLL
Sbjct: 1   MAEQIALPLLLHNPPPSSRPFFQNHHQNQNPATPTPPPLP-PPPPM--------PVTPLL 60

Query: 61  QDLLPHQHPSS--SAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLN 120
           Q+LL H +PS+  +  P  P    R RTRIG+SRD NRGKPWSHHRLS+QGQ IL S L+
Sbjct: 61  QELLLHPNPSTPQTQNPTSPPTLPRARTRIGKSRDSNRGKPWSHHRLSSQGQHILHSFLD 120

Query: 121 PEFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNR 180
           P+FDSS LDE LL L +   D    + DS+S D+LGI+KGL F+KK +LA+ VF++ + R
Sbjct: 121 PQFDSSKLDEQLLGLVDLHRDEFGSSLDSLSLDVLGIVKGLGFHKKFDLAIDVFEWFKKR 180

Query: 181 EDFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDG 218
           ED  SILS SV+AVIIS+LGK GR S A SL   L  DG
Sbjct: 181 EDCDSILSGSVVAVIISILGKVGRVSSATSLFQSLHKDG 210

The following BLAST results are available for this feature:

BLAST of MELO3C018506 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP362_ARATH	1.8e-44	47.27	Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN...	[more]

BLAST of MELO3C018506 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4H7_CUCSA	1.4e-104	90.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1	[more]
M5VJ93_PRUPE	1.0e-54	55.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001449mg PE=4 SV=1	[more]
A0A067K1X1_JATCU	2.6e-50	50.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22476 PE=4 SV=1	[more]
A0A061E043_THECC	4.6e-47	50.69	Pentatricopeptide repeat-containing protein, putative isoform 1 OS=Theobroma cac...	[more]
F6H676_VITVI	1.3e-46	49.53	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00440 PE=4 SV=...	[more]

BLAST of MELO3C018506 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02860.1	1.0e-45	47.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of MELO3C018506 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110047\|ref\|XP_008455020.1\|	1.0e-119	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo]	[more]
gi\|449438627\|ref\|XP_004137089.1\|	2.0e-104	90.78	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativu...	[more]
gi\|700188631\|gb\|KGN43864.1\|	2.0e-104	90.78	hypothetical protein Csa_7G071530 [Cucumis sativus]	[more]
gi\|1009125603\|ref\|XP_015879698.1\|	1.7e-55	55.07	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Ziziphus jujub...	[more]
gi\|645261687\|ref\|XP_008236415.1\|	1.5e-54	55.25	PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Prunus mume]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018506T1	MELO3C018506T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018506	Csa7G071530	Cucumber (Chinese Long) v2	cumeB530
MELO3C018506	Cla016080	Watermelon (97103) v1	mewmB240
MELO3C018506	ClCG02G006650	Watermelon (Charleston Gray)	mewcgB197
MELO3C018506	Cla97C02G033630	Watermelon (97103) v2	mewmbB180
MELO3C018506	Bhi05G000885	Wax gourd	mewgoB217
MELO3C018506	CSPI07G07000	Wild cucumber (PI 183967)	cpimeB538
MELO3C018506	Cucsa.219290	Cucumber (Gy14) v1	cgymeB379
MELO3C018506	CmaCh11G017100	Cucurbita maxima (Rimu)	cmameB098
MELO3C018506	CmaCh19G005630	Cucurbita maxima (Rimu)	cmameB463
MELO3C018506	CmoCh19G005780	Cucurbita moschata (Rifu)	cmomeB454
MELO3C018506	CmoCh11G014060	Cucurbita moschata (Rifu)	cmomeB085
MELO3C018506	Lsi03G005620	Bottle gourd (USVL1VR-Ls)	lsimeB247
MELO3C018506	Cp4.1LG15g04550	Cucurbita pepo (Zucchini)	cpemeB225
MELO3C018506	Cp4.1LG04g07750	Cucurbita pepo (Zucchini)	cpemeB604
MELO3C018506	CsGy7G006550	Cucumber (Gy14) v2	cgybmeB468
MELO3C018506	Carg16345	Silver-seed gourd	carmeB0460
MELO3C018506	Carg26996	Silver-seed gourd	carmeB0192
MELO3C018506	CsaV3_7G007980	Cucumber (Chinese Long) v3	cucmeB548

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018506	Cucurbita pepo (Zucchini)	cpemeB081
MELO3C018506	Cucurbita pepo (Zucchini)	cpemeB182
MELO3C018506	Cucurbita pepo (Zucchini)	cpemeB394
MELO3C018506	Bottle gourd (USVL1VR-Ls)	lsimeB253
MELO3C018506	Bottle gourd (USVL1VR-Ls)	lsimeB293
MELO3C018506	Bottle gourd (USVL1VR-Ls)	lsimeB466
MELO3C018506	Cucumber (Gy14) v2	cgybmeB090
MELO3C018506	Cucumber (Gy14) v2	cgybmeB235
MELO3C018506	Silver-seed gourd	carmeB0185
MELO3C018506	Silver-seed gourd	carmeB0295
MELO3C018506	Silver-seed gourd	carmeB0377
MELO3C018506	Cucumber (Chinese Long) v3	cucmeB109
MELO3C018506	Cucumber (Chinese Long) v3	cucmeB276
MELO3C018506	Cucumber (Chinese Long) v3	cucmeB282
MELO3C018506	Watermelon (97103) v2	mewmbB174
MELO3C018506	Watermelon (97103) v2	mewmbB192
MELO3C018506	Watermelon (97103) v2	mewmbB193
MELO3C018506	Watermelon (97103) v2	mewmbB206
MELO3C018506	Wax gourd	mewgoB198
MELO3C018506	Wax gourd	mewgoB228
MELO3C018506	Wax gourd	mewgoB263
MELO3C018506	Melon (DHL92) v3.5.1	memeB079
MELO3C018506	Melon (DHL92) v3.5.1	memeB094
MELO3C018506	Melon (DHL92) v3.5.1	memeB098
MELO3C018506	Cucumber (Gy14) v1	cgymeB567
MELO3C018506	Cucumber (Gy14) v1	cgymeB644
MELO3C018506	Cucurbita maxima (Rimu)	cmameB287
MELO3C018506	Cucurbita maxima (Rimu)	cmameB672
MELO3C018506	Cucurbita moschata (Rifu)	cmomeB280
MELO3C018506	Cucurbita moschata (Rifu)	cmomeB398
MELO3C018506	Cucurbita moschata (Rifu)	cmomeB665
MELO3C018506	Cucurbita moschata (Rifu)	cmomeB709
MELO3C018506	Wild cucumber (PI 183967)	cpimeB105
MELO3C018506	Wild cucumber (PI 183967)	cpimeB270
MELO3C018506	Wild cucumber (PI 183967)	cpimeB276
MELO3C018506	Cucumber (Chinese Long) v2	cumeB106
MELO3C018506	Cucumber (Chinese Long) v2	cumeB281
MELO3C018506	Watermelon (Charleston Gray)	mewcgB189
MELO3C018506	Watermelon (Charleston Gray)	mewcgB211
MELO3C018506	Watermelon (Charleston Gray)	mewcgB223
MELO3C018506	Watermelon (97103) v1	mewmB217
MELO3C018506	Watermelon (97103) v1	mewmB218
MELO3C018506	Watermelon (97103) v1	mewmB232