Cp4.1LG04g07750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g07750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCp4.1LG04 : 3919784 .. 3920803 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

mRNA sequence

ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

Coding sequence (CDS)

ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

Protein sequence

MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALRNQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKERWRF
Homology
[Close]
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.3e-83
Identity = 177/346 (51.16%), Postives = 235/346 (67.92%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADK+ LPLLLP  P SKP     +H         T+LS PPP P         + PLL 
Sbjct: 1   MADKLALPLLLPCTPSSKPYSHDQNHHISRTPFLTTSLSSPPPPP---------VEPLLH 60

Query: 61  GILHPHQDPSSPQTHNPK-SIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNPE 120
            +   HQ+P+S Q  + + S  R  TR G+SR    G PWS+H LS +G+Q+L SL+ P 
Sbjct: 61  DVFL-HQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPN 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQKD 180
            DS   + +L + FE         PES S ++L  +KGL F  K ++ALR       QKD
Sbjct: 121 FDSGQLDSVLSELFEP----FKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKD 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           + S+L++SV+A+IIS+LGK+GR S AA++ + L+ +G  +D+Y+YTSLI+A+A++GRYRE
Sbjct: 181 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AV +F K+E++G  PTLITYN+ILN +GKMG PW+KI ++V+ MKS G+APD  TYN LI
Sbjct: 241 AVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           + C RGSL++EAA+VFEEMKAAGF  DKVTYNALLDVYGKS RPKE
Sbjct: 301 TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

[Close]
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match: PP163_ARATH (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.2e-32
Identity = 103/328 (31.40%), Postives = 167/328 (50.91%), Query Frame = 1 

Query: 10  LLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDP 69
           L P  PPS PL S+ HH           LS PPP+    ++   P   +           
Sbjct: 38  LPPPSPPSFPLDSLLHHL--------VHLSSPPPRHSNSAAARFPSLEV----------- 97

Query: 70  SSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFF 129
            S  + + K I        R+     S   L  K   +++S++   L        L +FF
Sbjct: 98  -STDSSSSKPILGIEIENERNG----SLKLLCKKEVVLVNSIVEQPLTG------LSRFF 157

Query: 130 ETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL-------RNQKDFASILNSSVIAVI 189
           ++   EL  T      D++ ++KGL      E A+        +    A  L+  VI + 
Sbjct: 158 DSVKSELLRT------DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIF 217

Query: 190 ISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGY 249
           + +LG++ + S AA LL ++     ++D+ AYT+++ AY+  G+Y +A+ LF ++++ G 
Sbjct: 218 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP 277

Query: 250 TPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAA 309
           +PTL+TYN+IL+ +GKMG  W KI  ++D M+S G+  D  T + ++S+C R  L +EA 
Sbjct: 278 SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAK 329

Query: 310 EVFEEMKAAGFIPDKVTYNALLDVYGKS 331
           E F E+K+ G+ P  VTYNALL V+GK+
Sbjct: 338 EFFAELKSCGYEPGTVTYNALLQVFGKA 329

[Close]
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.0e-27
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 1 

Query: 175 NSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLF 234
           N  +  ++IS+LG++G       +  E+ + G+   +++YT+LI AY  NGRY  ++ L 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 235 NKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCR 294
           ++++ E  +P+++TYN ++NA  + G+ W  +  +   M+  G+ PD+ TYN L+S+C  
Sbjct: 200 DRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 295 GSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRR 333
             L  EA  VF  M   G +PD  TY+ L++ +GK RR
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297

[Close]
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-22
Identity = 89/317 (28.08%), Postives = 148/317 (46.69%), Query Frame = 1 

Query: 24  FHHQPPSPSSPHTTLSFPPPQ------PQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNP 83
           ++H+P   SS     S PPP       P  LS P     P    +  P  D SS  +   
Sbjct: 87  YNHRPYGASSSPRG-SAPPPSSVATVAPAQLSQP-----PNFSPLQTPKSDLSSDFSGRR 146

Query: 84  KSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELN 143
            + F +    GR +    + H  S+  +  L + ++   D   F+ ++L F         
Sbjct: 147 STRFVSKMHFGRQKTTMATRH--SSAAEDALQNAIDFSGDDEMFHSLMLSFESKL----- 206

Query: 144 FTPESVSFDILGIIKGLVFRNKNEVAL-----RNQKDFASILNSSVIAVIISVLGKQGRA 203
                 S D   II+ L  RN+ + A+       +++        + + +IS LG+ G+ 
Sbjct: 207 ----CGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKV 266

Query: 204 SFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNII 263
           + A  +       G    +YA+++LI+AY  +G + EA+ +FN +++ G  P L+TYN +
Sbjct: 267 TIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV 326

Query: 264 LNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAG 323
           ++A GK GM + ++A   D M+  GV PD  T+N L++ C RG L++ A  +F+EM    
Sbjct: 327 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 386

Query: 324 FIPDKVTYNALLDVYGK 330
              D  +YN LLD   K
Sbjct: 387 IEQDVFSYNTLLDAICK 386

[Close]
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match: PP342_ARATH (Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-19
Identity = 56/194 (28.87%), Postives = 106/194 (54.64%), Query Frame = 1 

Query: 134 VELNFTPESVSFDILGII--KGLVFRNKNEVALRNQKDFASILNSSVIAVIISVLGKQGR 193
           +   FTP +V+F++L  +  K  +F+  NE+ L  ++    +++      II+  GK   
Sbjct: 691 IRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH--GVVDVISYNTIIAAYGKNKD 750

Query: 194 ASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNI 253
            +  +S +  ++ +G  + + AY +L+ AY  + +  +   +  ++++    P   TYNI
Sbjct: 751 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 810

Query: 254 ILNAYGKMGMPW-SKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKA 313
           ++N YG+ G  W  ++A ++  +K  G+ PDLC+YN LI +   G + +EA  + +EM+ 
Sbjct: 811 MINIYGEQG--WIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRG 870

Query: 314 AGFIPDKVTYNALL 325
              IPDKVTY  L+
Sbjct: 871 RNIIPDKVTYTNLV 880

[Close]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match: A0A0A0K4H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 1.8e-130
Identity = 263/346 (76.01%), Postives = 286/346 (82.66%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADKV LPLLLPNPPPSK    VFHHQP SPSSP       PP P  LSS SSP+APLLQ
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPH-LSSASSPLAPLLQ 60

Query: 61  GILHPHQDPSSP-QTHNPKSIFRTHTRKGRS----RGNPWSHHRLSTKGKQILDSLLNPE 120
            +L PHQ PSS  Q H PK  FRT TR GRS    RG PWSHHRLST+G++ILDSLLNPE
Sbjct: 61  DLL-PHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQKD 180
            DSS  +EILLQ FETS   LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++D
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           FASIL++SV+AVIISVLGK+GRASFAASLLH+LRN+G+ IDIYAYTSLITAYASNGRYRE
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIA +VDSMKS GVAPDL TYN LI
Sbjct: 241 AVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           SSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRP+E
Sbjct: 301 SSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344

[Close]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match: M5VJ93_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001449mg PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.9e-92
Identity = 195/348 (56.03%), Postives = 245/348 (70.40%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MA+++ LPLLL NPPPS       HHQ  +P++P      PPP P P   P  P+ PLLQ
Sbjct: 1   MAEQIALPLLLHNPPPSSRPFFQNHHQNQNPATPT-----PPPLPPP---PPMPVTPLLQ 60

Query: 61  GILHPHQDPSSPQTHNPKS---IFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLN 120
            +L  H +PS+PQT NP S   + R  TR G+SR    G PWSHHRLS++G+ IL S L+
Sbjct: 61  ELLL-HPNPSTPQTQNPTSPPTLPRARTRIGKSRDSNRGKPWSHHRLSSQGQHILHSFLD 120

Query: 121 PELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQ 180
           P+ DSS  +E LL   +    E   + +S+S D+LGI+KGL F  K ++A+      + +
Sbjct: 121 PQFDSSKLDEQLLGLVDLHRDEFGSSLDSLSLDVLGIVKGLGFHKKFDLAIDVFEWFKKR 180

Query: 181 KDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRY 240
           +D  SIL+ SV+AVIIS+LGK GR S A SL   L  +G  +D+YAYTSLITA ASNGRY
Sbjct: 181 EDCDSILSGSVVAVIISILGKVGRVSSATSLFQSLHKDGFALDVYAYTSLITACASNGRY 240

Query: 241 REAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNM 300
           REAV +F K+E+EG  PTLITYN+ILN YGKMGMPW+KI A+V+ MKS G+APD  TYN 
Sbjct: 241 REAVTVFKKMEEEGCMPTLITYNVILNVYGKMGMPWNKIRALVECMKSAGIAPDSYTYNT 300

Query: 301 LISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           LI+ C RGSL+ EAAEVF+EMK+AG++PDKVTYNALLDVYGKSRR KE
Sbjct: 301 LITCCRRGSLHVEAAEVFQEMKSAGYVPDKVTYNALLDVYGKSRRTKE 339

[Close]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match: B9RY68_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0810720 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 4.4e-89
Identity = 189/351 (53.85%), Postives = 242/351 (68.95%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MA+KV LPLL+ NP P+KP      H    PSSP ++           ++ S P  PL+Q
Sbjct: 1   MAEKVALPLLISNPLPTKPQFPTQSHNLQQPSSPISS----------SNTSSPPFTPLIQ 60

Query: 61  GILHPHQ--DPSSPQTHNPKSIFRTHTR----KGRSRGNPWSHHRLSTKGKQILDSLLNP 120
            +L  H    P SP+  NP    R  TR    +  +RG PW+ HRLST G+Q+LDSL++P
Sbjct: 61  NMLINHHKIQPHSPKFINPNVSIRPRTRISKARDPNRGKPWASHRLSTLGQQVLDSLIDP 120

Query: 121 ELDSSYFNEILLQFFETSPVE----LNFTPESVSFDILGIIKGLVFRNKNEVAL------ 180
             + S  +++L Q FE    E     + T  S+S D+LGIIKGL F  K ++A+      
Sbjct: 121 CFEGSELDKVLSQLFEYYHKEELSLSSGTWNSLSMDVLGIIKGLGFYKKCDMAMSVFSWV 180

Query: 181 RNQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASN 240
           R ++DF S+LN SV+AVII++LGK+G+ S A+S+L+ LR +G  +D+YAYTSLITAYASN
Sbjct: 181 REREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASN 240

Query: 241 GRYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCT 300
           GRYR+AV++F K+E+EG  PTLITYN+ILN YGKMGMPWSKI+ +V  MKS GVAPD  T
Sbjct: 241 GRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYT 300

Query: 301 YNMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           YN LIS C RGSLY+EAA+VFEEMK +GF PDKVT+N LLDVYGKSRRPKE
Sbjct: 301 YNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKE 341

[Close]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match: A0A067F3R3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.7e-88
Identity = 189/345 (54.78%), Postives = 232/345 (67.25%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLI--SVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPL 60
           MA  + LPLLLP PPP+KPL      HH  P PS P         Q  P +SP++ I+PL
Sbjct: 1   MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQ-------QTTPSASPTT-ISPL 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDS 120
           LQ + +   + SS   H P+S  R    +  +RG PWSHHRLS KG+Q+L SL++   D 
Sbjct: 61  LQDLYN--NNSSSQPIHQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDV 120

Query: 121 SYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALRN--------QKDF 180
              + +L Q  + +P E +   E +  D+LGI+KGL F  K ++AL           KD 
Sbjct: 121 KDIDSVLSQLLDQNPGEKS---EDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDG 180

Query: 181 ASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREA 240
             +L  SVIAV+IS+LGK+G+ S AASLLH L  +G  ID+YAYTSLIT YASNGRYREA
Sbjct: 181 NLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREA 240

Query: 241 VMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLIS 300
           VM+F K+E+EG  PTLITYN+ILN YGKMGMPW+KI A+V+ MKS GV PD  T+N LIS
Sbjct: 241 VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 300

Query: 301 SCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
            C RGSL++EAA VFEEMK AGF PDKVTYNALLDVYGK RRPKE
Sbjct: 301 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332

[Close]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match: A0A067EVB9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.7e-88
Identity = 189/345 (54.78%), Postives = 232/345 (67.25%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLI--SVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPL 60
           MA  + LPLLLP PPP+KPL      HH  P PS P         Q  P +SP++ I+PL
Sbjct: 1   MAQNLSLPLLLPTPPPAKPLFLTQTNHHNLPPPSPPQQ-------QTTPSASPTT-ISPL 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDS 120
           LQ + +   + SS   H P+S  R    +  +RG PWSHHRLS KG+Q+L SL++   D 
Sbjct: 61  LQDLYN--NNSSSQPIHQPRSRTRLGKSRDSNRGKPWSHHRLSAKGQQVLQSLIDDSFDV 120

Query: 121 SYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALRN--------QKDF 180
              + +L Q  + +P E +   E +  D+LGI+KGL F  K ++AL           KD 
Sbjct: 121 KDIDSVLSQLLDQNPGEKS---EDLGADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDG 180

Query: 181 ASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREA 240
             +L  SVIAV+IS+LGK+G+ S AASLLH L  +G  ID+YAYTSLIT YASNGRYREA
Sbjct: 181 NLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREA 240

Query: 241 VMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLIS 300
           VM+F K+E+EG  PTLITYN+ILN YGKMGMPW+KI A+V+ MKS GV PD  T+N LIS
Sbjct: 241 VMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLIS 300

Query: 301 SCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
            C RGSL++EAA VFEEMK AGF PDKVTYNALLDVYGK RRPKE
Sbjct: 301 CCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKE 332

[Close]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match: AT5G02860.1 (AT5G02860.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 310.5 bits (794), Expect = 1.3e-84
Identity = 177/346 (51.16%), Postives = 235/346 (67.92%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADK+ LPLLLP  P SKP     +H         T+LS PPP P         + PLL 
Sbjct: 1   MADKLALPLLLPCTPSSKPYSHDQNHHISRTPFLTTSLSSPPPPP---------VEPLLH 60

Query: 61  GILHPHQDPSSPQTHNPK-SIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNPE 120
            +   HQ+P+S Q  + + S  R  TR G+SR    G PWS+H LS +G+Q+L SL+ P 
Sbjct: 61  DVFL-HQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPN 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQKD 180
            DS   + +L + FE         PES S ++L  +KGL F  K ++ALR       QKD
Sbjct: 121 FDSGQLDSVLSELFEP----FKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKD 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           + S+L++SV+A+IIS+LGK+GR S AA++ + L+ +G  +D+Y+YTSLI+A+A++GRYRE
Sbjct: 181 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AV +F K+E++G  PTLITYN+ILN +GKMG PW+KI ++V+ MKS G+APD  TYN LI
Sbjct: 241 AVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           + C RGSL++EAA+VFEEMKAAGF  DKVTYNALLDVYGKS RPKE
Sbjct: 301 TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

[Close]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match: AT2G18940.1 (AT2G18940.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-33
Identity = 103/328 (31.40%), Postives = 167/328 (50.91%), Query Frame = 1 

Query: 10  LLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDP 69
           L P  PPS PL S+ HH           LS PPP+    ++   P   +           
Sbjct: 38  LPPPSPPSFPLDSLLHHL--------VHLSSPPPRHSNSAAARFPSLEV----------- 97

Query: 70  SSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFF 129
            S  + + K I        R+     S   L  K   +++S++   L        L +FF
Sbjct: 98  -STDSSSSKPILGIEIENERNG----SLKLLCKKEVVLVNSIVEQPLTG------LSRFF 157

Query: 130 ETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL-------RNQKDFASILNSSVIAVI 189
           ++   EL  T      D++ ++KGL      E A+        +    A  L+  VI + 
Sbjct: 158 DSVKSELLRT------DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIF 217

Query: 190 ISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGY 249
           + +LG++ + S AA LL ++     ++D+ AYT+++ AY+  G+Y +A+ LF ++++ G 
Sbjct: 218 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP 277

Query: 250 TPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAA 309
           +PTL+TYN+IL+ +GKMG  W KI  ++D M+S G+  D  T + ++S+C R  L +EA 
Sbjct: 278 SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAK 329

Query: 310 EVFEEMKAAGFIPDKVTYNALLDVYGKS 331
           E F E+K+ G+ P  VTYNALL V+GK+
Sbjct: 338 EFFAELKSCGYEPGTVTYNALLQVFGKA 329

[Close]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match: AT1G74850.1 (AT1G74850.1 plastid transcriptionally active 2)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-28
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 1 

Query: 175 NSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLF 234
           N  +  ++IS+LG++G       +  E+ + G+   +++YT+LI AY  NGRY  ++ L 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 235 NKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCR 294
           ++++ E  +P+++TYN ++NA  + G+ W  +  +   M+  G+ PD+ TYN L+S+C  
Sbjct: 200 DRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 295 GSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRR 333
             L  EA  VF  M   G +PD  TY+ L++ +GK RR
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297

[Close]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match: AT2G31400.1 (AT2G31400.1 genomes uncoupled 1)

HSP 1 Score: 108.2 bits (269), Expect = 9.9e-24
Identity = 89/317 (28.08%), Postives = 148/317 (46.69%), Query Frame = 1 

Query: 24  FHHQPPSPSSPHTTLSFPPPQ------PQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNP 83
           ++H+P   SS     S PPP       P  LS P     P    +  P  D SS  +   
Sbjct: 87  YNHRPYGASSSPRG-SAPPPSSVATVAPAQLSQP-----PNFSPLQTPKSDLSSDFSGRR 146

Query: 84  KSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELN 143
            + F +    GR +    + H  S+  +  L + ++   D   F+ ++L F         
Sbjct: 147 STRFVSKMHFGRQKTTMATRH--SSAAEDALQNAIDFSGDDEMFHSLMLSFESKL----- 206

Query: 144 FTPESVSFDILGIIKGLVFRNKNEVAL-----RNQKDFASILNSSVIAVIISVLGKQGRA 203
                 S D   II+ L  RN+ + A+       +++        + + +IS LG+ G+ 
Sbjct: 207 ----CGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKV 266

Query: 204 SFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNII 263
           + A  +       G    +YA+++LI+AY  +G + EA+ +FN +++ G  P L+TYN +
Sbjct: 267 TIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV 326

Query: 264 LNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAG 323
           ++A GK GM + ++A   D M+  GV PD  T+N L++ C RG L++ A  +F+EM    
Sbjct: 327 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 386

Query: 324 FIPDKVTYNALLDVYGK 330
              D  +YN LLD   K
Sbjct: 387 IEQDVFSYNTLLDAICK 386

[Close]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match: AT4G30825.1 (AT4G30825.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 6.0e-21
Identity = 56/194 (28.87%), Postives = 106/194 (54.64%), Query Frame = 1 

Query: 134 VELNFTPESVSFDILGII--KGLVFRNKNEVALRNQKDFASILNSSVIAVIISVLGKQGR 193
           +   FTP +V+F++L  +  K  +F+  NE+ L  ++    +++      II+  GK   
Sbjct: 691 IRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLLAKRH--GVVDVISYNTIIAAYGKNKD 750

Query: 194 ASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNI 253
            +  +S +  ++ +G  + + AY +L+ AY  + +  +   +  ++++    P   TYNI
Sbjct: 751 YTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 810

Query: 254 ILNAYGKMGMPW-SKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKA 313
           ++N YG+ G  W  ++A ++  +K  G+ PDLC+YN LI +   G + +EA  + +EM+ 
Sbjct: 811 MINIYGEQG--WIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRG 870

Query: 314 AGFIPDKVTYNALL 325
              IPDKVTY  L+
Sbjct: 871 RNIIPDKVTYTNLV 880

[Close]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: gi|659110047|ref|XP_008455020.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 492.3 bits (1266), Expect = 6.9e-136
Identity = 268/347 (77.23%), Postives = 292/347 (84.15%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHT-TLSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK L  VFHHQPP PSSP   +L+FPPP   P SS SSP+APLL
Sbjct: 17  MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 76

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRSR    G PWSHHRLST+G++ILDSLLNP
Sbjct: 77  QDLL-PHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNP 136

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETSP  LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 137 EFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRE 196

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 197 DFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDGVHIDIYAYTSLITAYASNGRYR 256

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKI+A+VDSMKS GV PDL TYN L
Sbjct: 257 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKISALVDSMKSSGVVPDLYTYNTL 316

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           ISSC RGSLY+EAAE+FEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 317 ISSCRRGSLYEEAAEIFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 362

[Close]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: gi|449438627|ref|XP_004137089.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus])

HSP 1 Score: 473.8 bits (1218), Expect = 2.5e-130
Identity = 263/346 (76.01%), Postives = 286/346 (82.66%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADKV LPLLLPNPPPSK    VFHHQP SPSSP       PP P  LSS SSP+APLLQ
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPH-LSSASSPLAPLLQ 60

Query: 61  GILHPHQDPSSP-QTHNPKSIFRTHTRKGRS----RGNPWSHHRLSTKGKQILDSLLNPE 120
            +L PHQ PSS  Q H PK  FRT TR GRS    RG PWSHHRLST+G++ILDSLLNPE
Sbjct: 61  DLL-PHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQKD 180
            DSS  +EILLQ FETS   LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++D
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           FASIL++SV+AVIISVLGK+GRASFAASLLH+LRN+G+ IDIYAYTSLITAYASNGRYRE
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIA +VDSMKS GVAPDL TYN LI
Sbjct: 241 AVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           SSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRP+E
Sbjct: 301 SSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344

[Close]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: gi|700188631|gb|KGN43864.1| (hypothetical protein Csa_7G071530 [Cucumis sativus])

HSP 1 Score: 473.8 bits (1218), Expect = 2.5e-130
Identity = 263/346 (76.01%), Postives = 286/346 (82.66%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADKV LPLLLPNPPPSK    VFHHQP SPSSP       PP P  LSS SSP+APLLQ
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPPTPH-LSSASSPLAPLLQ 60

Query: 61  GILHPHQDPSSP-QTHNPKSIFRTHTRKGRS----RGNPWSHHRLSTKGKQILDSLLNPE 120
            +L PHQ PSS  Q H PK  FRT TR GRS    RG PWSHHRLST+G++ILDSLLNPE
Sbjct: 61  DLL-PHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNPE 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQKD 180
            DSS  +EILLQ FETS   LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++D
Sbjct: 121 FDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRED 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           FASIL++SV+AVIISVLGK+GRASFAASLLH+LRN+G+ IDIYAYTSLITAYASNGRYRE
Sbjct: 181 FASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIA +VDSMKS GVAPDL TYN LI
Sbjct: 241 AVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           SSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRP+E
Sbjct: 301 SSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344

[Close]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: gi|657962926|ref|XP_008373065.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Malus domestica])

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 194/348 (55.75%), Postives = 239/348 (68.68%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MA+++ LPLLLPNPPPS       HHQP +P++P      PPP          P+ PLLQ
Sbjct: 1   MAEQIALPLLLPNPPPSSRPFFQTHHQPQNPATP------PPP----------PMTPLLQ 60

Query: 61  GILHPHQDPSSPQTHNPKS---IFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLN 120
            +L  H +PS+PQT NP S   + R  TR GRSR    G PWSHHRLS++G+ IL S L+
Sbjct: 61  ELLL-HPNPSTPQTQNPSSPSTLPRARTRIGRSRDSNRGKPWSHHRLSSQGQHILHSFLD 120

Query: 121 PELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQ 180
           P+ DSS   E L+   E    E   + +S++ D+LGI+KGL F  K ++A+      + +
Sbjct: 121 PQFDSSXLGEKLVGLVEMHRDEFGSSLDSLALDLLGIVKGLSFHKKFDLAISVFEWFKKR 180

Query: 181 KDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRY 240
           +D  S+L+ SV+AVIIS+LGK GR S A SL   L   G  +D+YAYTSLITA ASNGRY
Sbjct: 181 EDCDSVLSGSVVAVIISILGKVGRVSNATSLFQNLHKEGFALDVYAYTSLITACASNGRY 240

Query: 241 REAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNM 300
           REAV +F K+E+EG  PTLITYN+ILN YGKMGMPW KI A+V+ MKS G+ PD  TYN 
Sbjct: 241 REAVSVFKKMEEEGCRPTLITYNVILNVYGKMGMPWHKIRALVEGMKSAGITPDSYTYNT 300

Query: 301 LISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           LI+ C RGSLY EAAEVF+EMK AGF+PDKVTYNALLDVYGKSRR KE
Sbjct: 301 LITCCRRGSLYVEAAEVFQEMKTAGFVPDKVTYNALLDVYGKSRRTKE 331

[Close]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: gi|645261687|ref|XP_008236415.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Prunus mume])

HSP 1 Score: 347.4 bits (890), Expect = 2.8e-92
Identity = 195/348 (56.03%), Postives = 245/348 (70.40%), Query Frame = 1 

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MA+++ LPLLL NPPPS       HHQ  +P++P      PPP P P   P  P+ PLLQ
Sbjct: 1   MAEQIALPLLLHNPPPSSRPFFQNHHQNQNPATPT-----PPPLPPP---PPMPVTPLLQ 60

Query: 61  GILHPHQDPSSPQTHNPKS---IFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLN 120
            +L  H +PS+PQT NP S   + R  TR G+SR    G PWSHHRLS++G+ IL S L+
Sbjct: 61  ELLL-HPNPSTPQTQNPTSPPTLPRARTRIGKSRDSNRGKPWSHHRLSSQGQHILHSFLD 120

Query: 121 PELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQ 180
           P+ DSS  +E LL   +    E   + +S+S D+LGI+KGL F  K ++A+      + +
Sbjct: 121 PQFDSSKLDEQLLGLVDLHRDEFGSSLDSLSLDVLGIVKGLGFHKKFDLAIDVFEWFKKR 180

Query: 181 KDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRY 240
           +D  SIL+ SV+AVIIS+LGK GR S A SL   L  +G  +D+YAYTSLIT+ ASNGRY
Sbjct: 181 EDCDSILSGSVVAVIISILGKVGRVSSATSLFQSLHKDGFALDVYAYTSLITSCASNGRY 240

Query: 241 REAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNM 300
           REAV +F K+E+EG  PTLITYN+ILN YGKMGMPW+KI A+V+ MKS G+APD  TYN 
Sbjct: 241 REAVTVFKKMEEEGCRPTLITYNVILNVYGKMGMPWNKIRALVECMKSAGIAPDSYTYNT 300

Query: 301 LISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           LI+ C RGSL+ EAAEVF+EMK+AGF+PDKVTYNALLDVYGKSRR KE
Sbjct: 301 LITCCRRGSLHVEAAEVFQEMKSAGFVPDKVTYNALLDVYGKSRRTKE 339

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP362_ARATH2.3e-8351.16Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN... [more]
PP163_ARATH3.2e-3231.40Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop... [more]
PP124_ARATH4.0e-2734.18Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop... [more]
PP178_ARATH1.8e-2228.08Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
PP342_ARATH1.1e-1928.87Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG04g07750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4H7_CUCSA1.8e-13076.01Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071530 PE=4 SV=1[more]
M5VJ93_PRUPE1.9e-9256.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001449mg PE=4 SV=1[more]
B9RY68_RICCO4.4e-8953.85Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A067F3R3_CITSI3.7e-8854.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1[more]
A0A067EVB9_CITSI3.7e-8854.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003451mg PE=4 SV=1[more]
BLAST of Cp4.1LG04g07750 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02860.11.3e-8451.16 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G18940.11.8e-3331.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G74850.12.3e-2834.18 plastid transcriptionally active 2[more]
AT2G31400.19.9e-2428.08 genomes uncoupled 1[more]
AT4G30825.16.0e-2128.87 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110047|ref|XP_008455020.1|6.9e-13677.23PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo][more]
gi|449438627|ref|XP_004137089.1|2.5e-13076.01PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativu... [more]
gi|700188631|gb|KGN43864.1|2.5e-13076.01hypothetical protein Csa_7G071530 [Cucumis sativus][more]
gi|657962926|ref|XP_008373065.1|1.2e-9255.75PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Malus domestic... [more]
gi|645261687|ref|XP_008236415.1|2.8e-9256.03PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009451 RNA modification
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07750.1Cp4.1LG04g07750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 280..327
score: 8.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 197..259
score: 8.7
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 212..245
score: 6.1E-7coord: 247..281
score: 3.5E-6coord: 283..316
score: 1.5
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 210..244
score: 12.321coord: 245..280
score: 10.49coord: 281..315
score: 13.197coord: 316..339
score: 8.024coord: 175..209
score: 7
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 210..311
score: 2.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 8..78
score: 1.4E-69coord: 113..145
score: 1.4E-69coord: 180..335
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g07750CmaCh11G017100Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g07750CmoCh11G014060Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g07750MELO3C018506Melon (DHL92) v3.5.1cpemeB604
Cp4.1LG04g07750MELO3C018506.2Melon (DHL92) v3.6.1cpemedB715
Cp4.1LG04g07750CsaV3_7G007980Cucumber (Chinese Long) v3cpecucB0868
Cp4.1LG04g07750Bhi05G000885Wax gourdcpewgoB0847
Cp4.1LG04g07750CsGy7G006550Cucumber (Gy14) v2cgybcpeB969
Cp4.1LG04g07750Carg16345Silver-seed gourdcarcpeB0639
Cp4.1LG04g07750Carg26996Silver-seed gourdcarcpeB0272
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g07750Cp4.1LG15g04550Cucurbita pepo (Zucchini)cpecpeB269
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g07750Cucurbita pepo (Zucchini)cpecpeB133
Cp4.1LG04g07750Cucurbita pepo (Zucchini)cpecpeB400
Cp4.1LG04g07750Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG04g07750Cucurbita pepo (Zucchini)cpecpeB500
Cp4.1LG04g07750Cucumber (Gy14) v1cgycpeB0602
Cp4.1LG04g07750Cucurbita maxima (Rimu)cmacpeB539
Cp4.1LG04g07750Cucurbita maxima (Rimu)cmacpeB749
Cp4.1LG04g07750Cucurbita moschata (Rifu)cmocpeB321
Cp4.1LG04g07750Cucurbita moschata (Rifu)cmocpeB494
Cp4.1LG04g07750Cucurbita moschata (Rifu)cmocpeB703
Cp4.1LG04g07750Wild cucumber (PI 183967)cpecpiB697
Cp4.1LG04g07750Cucumber (Chinese Long) v2cpecuB695
Cp4.1LG04g07750Bottle gourd (USVL1VR-Ls)cpelsiB543
Cp4.1LG04g07750Bottle gourd (USVL1VR-Ls)cpelsiB552
Cp4.1LG04g07750Watermelon (Charleston Gray)cpewcgB590
Cp4.1LG04g07750Watermelon (Charleston Gray)cpewcgB624
Cp4.1LG04g07750Watermelon (97103) v1cpewmB665
Cp4.1LG04g07750Cucumber (Gy14) v2cgybcpeB237
Cp4.1LG04g07750Melon (DHL92) v3.6.1cpemedB746
Cp4.1LG04g07750Melon (DHL92) v3.6.1cpemedB771
Cp4.1LG04g07750Silver-seed gourdcarcpeB0266
Cp4.1LG04g07750Silver-seed gourdcarcpeB0409
Cp4.1LG04g07750Silver-seed gourdcarcpeB0529
Cp4.1LG04g07750Cucumber (Chinese Long) v3cpecucB0834
Cp4.1LG04g07750Cucumber (Chinese Long) v3cpecucB0847
Cp4.1LG04g07750Wax gourdcpewgoB0845
Cp4.1LG04g07750Wax gourdcpewgoB0860
Cp4.1LG04g07750Wax gourdcpewgoB0879