MELO3C018340 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018340
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCryptochrome 2A apoprotein
Locationchr10 : 18518124 .. 18520801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCACGCCGAAACGTAACCCACGCTGAATCCGTATTTGTATTTCACGATACCCACGATACCCACGCTGTCTCTGTATTTCACGATACGCACGCTGAAGGCGTTGTCTCTATATTACACGATACCCACGCTGAATCCGTAAAGGGTTCTTGAGTTTTTCGAATAAGAGGATGTTGGTTTAAGGTAATTTCTCCATCTATTCATTTCTCAATTTGATTTCTGGGTTCCTTTTGGATTTCGATTATTCTTCTTCCCCTTGTTTTTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNCTCAATTTGATTTCTGGGTTTCCTTTTGGATTTCGATTATTCTTCTTCCCCTTGTTTTTGTTTTTTTTTTTATGGGTTTTTCCCCTTAAATTGTCTTAATTTTGTGTTATACTCTCTCTGTTTGTTTGTTGTTTGCTGCTATGGTTCTGATTCTTTTTAACCATTTGGGGTCTACTGCTTTTGCCCCTTATGCATTTTTCTTTTGTATTCAGACTTTTTACTTGTGGACTGTTTCTCAATTTTACGTCTGTTGATTCGTCTACTTGGTTTTGGTTGGTAATTGTTGTTGATTGTGTTTTGTACATTCGAGAATTTGTTTGTTTGAGACTTGGAGATGATAGTGTTGTTTGTTCCCTGGTTGTTGAGTGAGTGGCTGAGGGGAGAACTGATTTTTTCCCTTGTTGATCGCCTTTTGCTGTTTCGTTCTACTGTATTTTCTACTGAGCTTGGCAAGATTTGATTGCACCTGGGGTTCAATTTTCTGAGTGGTGTTGGTCTTTGTTCTCTGATTGGCTTTTGCATTTTTAATCTCTGATCGATTGTTATGAATTTGATTGACAGCAATTGAGGGGACCATGGAATCATTGTGGTTCCTCTCATAGATTTTGATTTCTGAGGTGTTGAGAAGGCTTTAACCTTTTTCTCACTGAAATGGATGGTGGAAGCTCTGAATCCCCAAATATGGGTTGTAAGAAGACCATAGTATGGTTTCGTAGAGACCTTAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTACTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGAAGGGACAATTCTATCCTGGTCAAGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCTATTTGAAACAGTCACTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTCTCTCTTCTAGAGTGTATCAATGCTACTGGGGCAACAAAAGTAGCATTTAACTGTCTCTTCGGTACGTTTGTTTCCTTTCTAGTTTCATTCTTTTGATTGGATTTTGATGGTCTTTTCAAATATGACTATGCTGATACACCTTAATGATTGCATTATATGTATCACGTAGCCCTGAGGAACTTCATGTAGAGGAATTGTCATTACGTTATAATGTATGATCAATGTTCTTTTTCCTATGTAAGTGTTCCAGCTGATTGAATTGTAGTTTTGTAGTGGATGTGGATCATCATGCTACTTTTTGGGATTTCTTGTGCATGTTACTTTATGTTGGTGAACAAAATTTGTGCTTTTTCACGACAAAGTTCTTTAAATTCCTAGGGGCAAACCTTACCAAACTTTGTGTGGATGGGTAACTTTATTACTAACAAGTTGGAAGATGGGAATAAATTGGAGGAAAGAGATTTCTCAAAATACTCATATCACCTAACTATAAGTTTGTCATTAAGTCAGCAGTTGGCTTCTTAACAACATGTTAGAATATGGAAATTAATCAGGAAGAAGATTGGGAATCACATGCATTTAAATTAGGACAGAAGGAATTCATAGATAATCGTAGAAATTTTGGATGATACAAATTAAACGAAGAAGAAAGAGGACGGTATATTAAATACAACCACAGTTTGTGATCTATTACTTTTTTTTTCCACATCAAACGAAAAAATGCGAGAGCTGATACTTTGTTTTGTAGGGATGCCGTCAAGGTTGGGCACAATATAAATCACCATCAATTCAAGGTAGATATTGCATAAAATACACAAACCGTGATTCTTAATTACCTTCACTTAACTGGTGGAGAGAAACCCTTGTAAGAACTTAATCATCTCATTTTATGAATTCCTCCATGGAAAGAGAAAATTTTATTCTCAAGCAATCACATTTTGGAACGGGACCTAGAATTATAGATAGGTTTAACTTATTCTCCTTGTTATAGGGCCAAATAAATAGTTTTAAAGGAATTCTTTTTGCCTTTGTGTTTAAGACAGTCCTTTGTCAACTTAGGGGTATATTAAGATCATTCTACTAATGGTTAACTTAACCTTTCATCTCAGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAGAACTAGTTGAACTCGAAATTTCCATGCAGAGCTACAATGCAGATCTTTTATATGAGCCATAGGACGTAAATGATGAAAATTGGAATGCTTTTACGACCTTCAAAGAATATTGGGATAAATGTCATCTTTTGAAAAAGGAGTTGGTTTCAACTCTCCCTCCATGGAAACTACAGCAGGCTGCAGGTACAATTCTGACATTACCTATATGTAATAACTGTTGAATAATTCCTCCTTGACGATACTTGATACATCCTCTGGTACTTCTATGATTGATATTTGTAATACTTCTGGAAGATAGATAGTACTAC

mRNA sequence

ACCCACGCCGAAACGTAACCCACGCTGAATCCGTATTTGTATTTCACGATACCCACGATACCCACGCTGTCTCTGTATTTCACGATACGCACGCTGAAGGCGTTGTCTCTATATTACACGATACCCACGCTGAATCCGTAAAGGGTTCTTGAGTTTTTCGAATAAGAGGATGTTGGTTTAAGCAATTGAGGGGACCATGGAATCATTGTGGTTCCTCTCATAGATTTTGATTTCTGAGGTGTTGAGAAGGCTTTAACCTTTTTCTCACTGAAATGGATGGTGGAAGCTCTGAATCCCCAAATATGGGTTGTAAGAAGACCATAGTATGGTTTCGTAGAGACCTTAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTACTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGAAGGGACAATTCTATCCTGGTCAAGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCTATTTGAAACAGTCACTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTCTCTCTTCTAGAGTGTATCAATGCTACTGGGGCAACAAAAGTAGCATTTAACTGTCTCTTCGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAGAACTAGTTGAACTCGAAATTTCCATGCAGAGCTACAATGCAGATCTTTTATATGAGCCATAGGACGTAAATGATGAAAATTGGAATGCTTTTACGACCTTCAAAGAATATTGGGATAAATGTCATCTTTTGAAAAAGGAGTTGGTTTCAACTCTCCCTCCATGGAAACTACAGCAGGCTGCAGGTACAATTCTGACATTACCTATATGTAATAACTGTTGAATAATTCCTCCTTGACGATACTTGATACATCCTCTGGTACTTCTATGATTGATATTTGTAATACTTCTGGAAGATAGATAGTACTAC

Coding sequence (CDS)

ATGGATGGTGGAAGCTCTGAATCCCCAAATATGGGTTGTAAGAAGACCATAGTATGGTTTCGTAGAGACCTTAGGATTGAGGACAACCCTGCTTTAGCTGCTGCTACTAGGAATGGTTTTGTATATCCTGTGTACATATGGTGTCCTAAAGAGAAGGGACAATTCTATCCTGGTCAAGTATCGAGGTGGTGGTTGAAGCAATCCCTTGCCTATTTGAAACAGTCACTTAAATCACTTGGTGCTGACCTAGTGCTGATGAAAACTCAGAGTACTATTTTCTCTCTTCTAGAGTGTATCAATGCTACTGGGGCAACAAAAGTAGCATTTAACTGTCTCTTCGATCCCATTTCACTTGTCCGAGACCACAATATTAAAGAAGAACTAGTTGAACTCGAAATTTCCATGCAGAGCTACAATGCAGATCTTTTATATGAGCCATAG

Protein sequence

MDGGSSESPNMGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEISMQSYNADLLYEP*
Homology
[Close]
BLAST of MELO3C018340 vs. Swiss-Prot
Match: CRY2_ARATH (Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 3.8e-54
Identity = 97/133 (72.93%), Postives = 114/133 (85.71%), Query Frame = 1 

Query: 14  KKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLK 73
           KKTIVWFRRDLRIEDNPALAAA   G V+PV+IWCP+E+GQFYPG+ SRWW+KQSLA+L 
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 74  QSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEI 133
           QSLK+LG+DL L+KT +TI ++L+CI  TGATKV FN L+DP+SLVRDH +KE+LVE  I
Sbjct: 65  QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124

Query: 134 SMQSYNADLLYEP 147
           S+QSYN DLLYEP
Sbjct: 125 SVQSYNGDLLYEP 137

[Close]
BLAST of MELO3C018340 vs. Swiss-Prot
Match: CRY1_SINAL (Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-52
Identity = 93/133 (69.92%), Postives = 113/133 (84.96%), Query Frame = 1 

Query: 14  KKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLK 73
           KKTIVWFRRDLRIEDNPALAAA   G V+PV+IWCP+E+GQFYPG+ SRWW+KQSLA+L+
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLR 64

Query: 74  QSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEI 133
           QSLK+LG++L L+KT ST+ ++L+C+ ATGATKV FN L+DP+SLVRDH +KE+LVE  I
Sbjct: 65  QSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124

Query: 134 SMQSYNADLLYEP 147
           S+QSYN DL   P
Sbjct: 125 SVQSYNGDLCMSP 137

[Close]
BLAST of MELO3C018340 vs. Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-40
Identity = 78/146 (53.42%), Postives = 106/146 (72.60%), Query Frame = 1 

Query: 1   MDGGSSESPNMGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQV 60
           M G  S   + GC  +IVWFRRDLR+EDNPALAAA R G V  +++W P+E+G ++PG+V
Sbjct: 1   MSGSVSGCGSGGC--SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRV 60

Query: 61  SRWWLKQSLAYLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVR 120
           SRWWLK SLA L  SL+SLG  L+  ++  ++ SLL+ + +TGA+++ FN L+DP+SLVR
Sbjct: 61  SRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVR 120

Query: 121 DHNIKEELVELEISMQSYNADLLYEP 147
           DH  K+ L    I+++S+NADLLYEP
Sbjct: 121 DHRAKDVLTAQGIAVRSFNADLLYEP 144

[Close]
BLAST of MELO3C018340 vs. Swiss-Prot
Match: PHRA_AGRFC (Deoxyribodipyrimidine photo-lyase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=phrA PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 53/131 (40.46%), Postives = 73/131 (55.73%), Query Frame = 1 

Query: 17  IVWFRRDLRIEDNPALAAATRNGF-VYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLKQS 76
           IVWFR+DLR+ DN AL AA  +G  V PVYI   +EK     G    WWL  SLA L  S
Sbjct: 9   IVWFRKDLRLSDNLALLAAVEHGGPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSSS 68

Query: 77  LKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEISM 136
           L+  G  LVL    +    L + I+ TGA  V +N  +DP  +  D  +K++L +  +++
Sbjct: 69  LEKAGGRLVLASGDAERI-LRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDDGLTV 128

Query: 137 QSYNADLLYEP 147
           +S++  LL+EP
Sbjct: 129 RSFSGQLLHEP 135

[Close]
BLAST of MELO3C018340 vs. Swiss-Prot
Match: CRY2_CHICK (Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 1 

Query: 5   SSESPNMGCKKTIVWFRRDLRIEDNPALAAATRN-GFVYPVYIWCPKEKGQFYPGQVSRW 64
           ++ SP  G  +++ WFRR LR+ DNPAL AA R    +  +YI  P        G ++RW
Sbjct: 3   AAASPPRGFCRSVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVG-INRW 62

Query: 65  -WLKQSLAYLKQSLKSLGADLVLMKTQST-IFSLLECINATGATKVAFNCLFDPISLVRD 124
            +L QSL  L  SL+ L + L +++ Q T +F  L      G T++AF    +P    RD
Sbjct: 63  RFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRL--FKEWGVTRLAFEYDSEPFGKERD 122

Query: 125 HNI----KEELVE--LEISMQSYNADLLYE 146
             I    KE  VE  +E S   YN D + E
Sbjct: 123 AAIIKLAKEAGVEVVIENSHTLYNLDRIIE 149

[Close]
BLAST of MELO3C018340 vs. TrEMBL
Match: A0A061ELW0_THECC (Cryptochrome 2 isoform 1 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.6e-57
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. TrEMBL
Match: A0A061EMF3_THECC (Cryptochrome 2 isoform 2 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.6e-57
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. TrEMBL
Match: A0A061ENT7_THECC (Cryptochrome 2 isoform 3 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.6e-57
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. TrEMBL
Match: W9RPP3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021422 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.7e-56
Identity = 106/132 (80.30%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 15  KTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLKQ 74
           KTIVWFRRDLRIEDNPALAAA + G + PVYIWCPKE+GQFYPG+VSRWWLKQSLA+L+Q
Sbjct: 6   KTIVWFRRDLRIEDNPALAAAAKEGSILPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLEQ 65

Query: 75  SLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEIS 134
           SLKSLGA+LVL+KTQST+ +LLECI ATGATKV FN L+DP+SLVRDHN+KE+LVEL IS
Sbjct: 66  SLKSLGAELVLIKTQSTLEALLECIKATGATKVVFNHLYDPVSLVRDHNVKEKLVELGIS 125

Query: 135 MQSYNADLLYEP 147
           +QSYN DLL+EP
Sbjct: 126 VQSYNGDLLFEP 137

[Close]
BLAST of MELO3C018340 vs. TrEMBL
Match: V4U2K0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004525mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.1e-56
Identity = 107/136 (78.68%), Postives = 123/136 (90.44%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           MG  +TIVWFRRDLRIEDNPALAAA R+G V+PVYIWCPKE+GQFYPG+VSRWWLKQSL+
Sbjct: 1   MGGNRTIVWFRRDLRIEDNPALAAAARDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSLS 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           YL QSLKSLGA+LVL KT+ST+ +LLECI+A  ATKV FN L+DP+SLVRDH+IKE+LVE
Sbjct: 61  YLGQSLKSLGAELVLFKTESTLAALLECISAIKATKVVFNHLYDPVSLVRDHSIKEKLVE 120

Query: 131 LEISMQSYNADLLYEP 147
           L IS+QSYN DLLYEP
Sbjct: 121 LGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. TAIR10
Match: AT1G04400.2 (AT1G04400.2 cryptochrome 2)

HSP 1 Score: 212.2 bits (539), Expect = 2.1e-55
Identity = 97/133 (72.93%), Postives = 114/133 (85.71%), Query Frame = 1 

Query: 14  KKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLK 73
           KKTIVWFRRDLRIEDNPALAAA   G V+PV+IWCP+E+GQFYPG+ SRWW+KQSLA+L 
Sbjct: 5   KKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 74  QSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEI 133
           QSLK+LG+DL L+KT +TI ++L+CI  TGATKV FN L+DP+SLVRDH +KE+LVE  I
Sbjct: 65  QSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGI 124

Query: 134 SMQSYNADLLYEP 147
           S+QSYN DLLYEP
Sbjct: 125 SVQSYNGDLLYEP 137

[Close]
BLAST of MELO3C018340 vs. TAIR10
Match: AT4G08920.1 (AT4G08920.1 cryptochrome 1)

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-41
Identity = 78/146 (53.42%), Postives = 106/146 (72.60%), Query Frame = 1 

Query: 1   MDGGSSESPNMGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQV 60
           M G  S   + GC  +IVWFRRDLR+EDNPALAAA R G V  +++W P+E+G ++PG+V
Sbjct: 1   MSGSVSGCGSGGC--SIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRV 60

Query: 61  SRWWLKQSLAYLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVR 120
           SRWWLK SLA L  SL+SLG  L+  ++  ++ SLL+ + +TGA+++ FN L+DP+SLVR
Sbjct: 61  SRWWLKNSLAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVR 120

Query: 121 DHNIKEELVELEISMQSYNADLLYEP 147
           DH  K+ L    I+++S+NADLLYEP
Sbjct: 121 DHRAKDVLTAQGIAVRSFNADLLYEP 144

[Close]
BLAST of MELO3C018340 vs. TAIR10
Match: AT3G15620.1 (AT3G15620.1 DNA photolyase family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 42/141 (29.79%), Postives = 68/141 (48.23%), Query Frame = 1 

Query: 16  TIVWFRRDLRIEDNPALAAATRNG-FVYPVYIWCP----KEKGQFYPGQ----VSR-WWL 75
           +++WFR+ LR+ DNPAL  A++   F+YPV++  P     +   F PG     V+R  +L
Sbjct: 26  SLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFL 85

Query: 76  KQSLAYLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIK 135
            +SL  L  SLK LG+ L++ K +     L+ C+      ++ F    DP     D  +K
Sbjct: 86  LESLKDLDSSLKKLGSRLLVFKGEPGEV-LVRCLQEWKVKRLCFEYDTDPYYQALDVKVK 145

Query: 136 EELVELEISMQSYNADLLYEP 147
           +      + + S  +  L+ P
Sbjct: 146 DYASSTGVEVFSPVSHTLFNP 165

[Close]
BLAST of MELO3C018340 vs. NCBI nr
Match: gi|659121397|ref|XP_008460640.1| (PREDICTED: cryptochrome-1 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1 

Query: 1   MDGGSSESPNMGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQV 60
           MDGGSSESP+MGC KTIVWFRRDLRIEDNPALAAA RNGFVYPVYIWCPKE+GQFYPG+V
Sbjct: 1   MDGGSSESPDMGCNKTIVWFRRDLRIEDNPALAAAARNGFVYPVYIWCPKEEGQFYPGRV 60

Query: 61  SRWWLKQSLAYLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVR 120
           SRWWLKQSLA+LKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCL+DPISLVR
Sbjct: 61  SRWWLKQSLAHLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLYDPISLVR 120

Query: 121 DHNIKEELVELEISMQSYNADLLYEP 147
           DHNIKE+LVELEIS+QSYNADLLYEP
Sbjct: 121 DHNIKEKLVELEISVQSYNADLLYEP 146

[Close]
BLAST of MELO3C018340 vs. NCBI nr
Match: gi|590659375|ref|XP_007035110.1| (Cryptochrome 2 isoform 2 [Theobroma cacao])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. NCBI nr
Match: gi|590659379|ref|XP_007035111.1| (Cryptochrome 2 isoform 3 [Theobroma cacao])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. NCBI nr
Match: gi|590659371|ref|XP_007035109.1| (Cryptochrome 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 106/136 (77.94%), Postives = 124/136 (91.18%), Query Frame = 1 

Query: 11  MGCKKTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLA 70
           M   KTIVWFRRDLRI+DNPALAAA RNG V+PV+IWCPKE+GQFYPG+VSRWWLKQSLA
Sbjct: 1   MSSSKTIVWFRRDLRIDDNPALAAAARNGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLA 60

Query: 71  YLKQSLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVE 130
           +L+QSL+SLGA+LVL+KTQST+ +LL+CINATGATKV FN L+DP+SLVRDH IKE+L E
Sbjct: 61  HLEQSLRSLGAELVLIKTQSTLSALLDCINATGATKVVFNHLYDPVSLVRDHGIKEKLAE 120

Query: 131 LEISMQSYNADLLYEP 147
           + IS+QSYN DLLYEP
Sbjct: 121 IGISVQSYNGDLLYEP 136

[Close]
BLAST of MELO3C018340 vs. NCBI nr
Match: gi|703130847|ref|XP_010104735.1| (hypothetical protein L484_021422 [Morus notabilis])

HSP 1 Score: 225.7 bits (574), Expect = 5.2e-56
Identity = 106/132 (80.30%), Postives = 122/132 (92.42%), Query Frame = 1 

Query: 15  KTIVWFRRDLRIEDNPALAAATRNGFVYPVYIWCPKEKGQFYPGQVSRWWLKQSLAYLKQ 74
           KTIVWFRRDLRIEDNPALAAA + G + PVYIWCPKE+GQFYPG+VSRWWLKQSLA+L+Q
Sbjct: 6   KTIVWFRRDLRIEDNPALAAAAKEGSILPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLEQ 65

Query: 75  SLKSLGADLVLMKTQSTIFSLLECINATGATKVAFNCLFDPISLVRDHNIKEELVELEIS 134
           SLKSLGA+LVL+KTQST+ +LLECI ATGATKV FN L+DP+SLVRDHN+KE+LVEL IS
Sbjct: 66  SLKSLGAELVLIKTQSTLEALLECIKATGATKVVFNHLYDPVSLVRDHNVKEKLVELGIS 125

Query: 135 MQSYNADLLYEP 147
           +QSYN DLL+EP
Sbjct: 126 VQSYNGDLLFEP 137

The following BLAST results are available for this feature:
BLAST of MELO3C018340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRY2_ARATH3.8e-5472.93Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2[more]
CRY1_SINAL2.1e-5269.92Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1[more]
CRY1_ARATH9.0e-4053.42Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2[more]
PHRA_AGRFC1.8e-1640.46Deoxyribodipyrimidine photo-lyase OS=Agrobacterium fabrum (strain C58 / ATCC 339... [more]
CRY2_CHICK4.1e-0836.00Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2[more]
BLAST of MELO3C018340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061ELW0_THECC9.6e-5777.94Cryptochrome 2 isoform 1 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
A0A061EMF3_THECC9.6e-5777.94Cryptochrome 2 isoform 2 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
A0A061ENT7_THECC9.6e-5777.94Cryptochrome 2 isoform 3 OS=Theobroma cacao GN=TCM_020885 PE=4 SV=1[more]
W9RPP3_9ROSA3.7e-5680.30Uncharacterized protein OS=Morus notabilis GN=L484_021422 PE=4 SV=1[more]
V4U2K0_9ROSI8.1e-5678.68Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004525mg PE=4 SV=1[more]
BLAST of MELO3C018340 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04400.22.1e-5572.93 cryptochrome 2[more]
AT4G08920.15.1e-4153.42 cryptochrome 1[more]
AT3G15620.11.9e-0829.79 DNA photolyase family protein[more]
BLAST of MELO3C018340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121397|ref|XP_008460640.1|1.9e-7493.84PREDICTED: cryptochrome-1 [Cucumis melo][more]
gi|590659375|ref|XP_007035110.1|1.4e-5677.94Cryptochrome 2 isoform 2 [Theobroma cacao][more]
gi|590659379|ref|XP_007035111.1|1.4e-5677.94Cryptochrome 2 isoform 3 [Theobroma cacao][more]
gi|590659371|ref|XP_007035109.1|1.4e-5677.94Cryptochrome 2 isoform 1 [Theobroma cacao][more]
gi|703130847|ref|XP_010104735.1|5.2e-5680.30hypothetical protein L484_021422 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006050DNA_photolyase_N
IPR014729Rossmann-like_a/b/a_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0010617 circadian regulation of calcium ion oscillation
biological_process GO:0006281 DNA repair
biological_process GO:0009911 positive regulation of flower development
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0009637 response to blue light
biological_process GO:0009414 response to water deprivation
biological_process GO:0010118 stomatal movement
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
molecular_function GO:0003913 DNA photolyase activity
molecular_function GO:0042802 identical protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU52942melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018340T1MELO3C018340T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU52942MU52942transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 16..146
score: 2.5
IPR006050DNA photolyase, N-terminalPROFILEPS51645PHR_CRY_ALPHA_BETAcoord: 14..143
score: 31
IPR006050DNA photolyase, N-terminalunknownSSF52425Cryptochrome/photolyase, N-terminal domaincoord: 16..146
score: 4.71
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 10..146
score: 5.8
NoneNo IPR availablePANTHERPTHR11455CRYPTOCHROMEcoord: 15..146
score: 4.1
NoneNo IPR availablePANTHERPTHR11455:SF24CRYPTOCHROME-1coord: 15..146
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018340Cucurbita pepo (Zucchini)cpemeB383
MELO3C018340Cucurbita pepo (Zucchini)cpemeB384
MELO3C018340Bottle gourd (USVL1VR-Ls)lsimeB284
MELO3C018340Cucumber (Gy14) v2cgybmeB314
MELO3C018340Cucumber (Gy14) v2cgybmeB328
MELO3C018340Silver-seed gourdcarmeB0183
MELO3C018340Silver-seed gourdcarmeB0662
MELO3C018340Cucumber (Chinese Long) v3cucmeB374
MELO3C018340Cucumber (Chinese Long) v3cucmeB390
MELO3C018340Watermelon (97103) v2mewmbB067
MELO3C018340Wax gourdmewgoB085
MELO3C018340Cucurbita maxima (Rimu)cmameB659
MELO3C018340Cucurbita maxima (Rimu)cmameB660
MELO3C018340Cucurbita moschata (Rifu)cmomeB651
MELO3C018340Cucurbita moschata (Rifu)cmomeB653
MELO3C018340Wild cucumber (PI 183967)cpimeB367
MELO3C018340Cucumber (Chinese Long) v2cumeB375
MELO3C018340Watermelon (Charleston Gray)mewcgB068