MELO3C017893 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C017893
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat-containing family protein
Locationchr7 : 25729761 .. 25730174 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGAAGTATAGAGTGTCAGCCAGAGGCATCTTTGTATACAAAAGATTAAATTACATCAATCTTCCAAATACGGGCTTTTTGTAATTTAGTAACACCTAGAGTAGGGGAGGGATACAGATTTGGATGTTGTTCACCACATAATTTGATTGATTCACGGTGATTTTGCTAAAAATAAAACATTTTGTTTCAAAAG

mRNA sequence

ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGAAGTATAGAGTGTCAGCCAGAGGCATCTTTGTATACAAAAGATTAAATTACATCAATCTTCCAAATACGGGCTTTTTGTAATTTAGTAACACCTAGAGTAGGGGAGGGATACAGATTTGGATGTTGTTCACCACATAATTTGATTGATTCACGGTGATTTTGCTAAAAATAAAACATTTTGTTTCAAAAG

Coding sequence (CDS)

ATGATGATTGATGAGGGAATACCTCCATATATCGCTACTGTTGAGTTGTTGAGGGACCGACTTCTGGGGATAGGGTTCAAGGATCAGGTTGCGATACTTGGTGACAAAATGAAACGAAGCACTTCTTGCTCCATACAAGAGCTTGCAAACGTGATGAGTGGTGGAAAATGTCGCGAGGCTCAGTCGACGTTAAAAAATGAAGAGACGGAGCTTGAAAGTGACTGA

Protein sequence

MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREAQSTLKNEETELESD*
Homology
[Close]
BLAST of MELO3C017893 vs. Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-12
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY  TVE+LR+RL+G G  D V +L  KM+RS+SCS+Q++A  M G + R  
Sbjct: 444 MMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLG 503

Query: 61  QSTLKNEET----ELESD 75
           + +  +E+     ELE D
Sbjct: 504 RRSENSEDDDDDFELERD 521

[Close]
BLAST of MELO3C017893 vs. TrEMBL
Match: A0A0A0KYE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004910 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-29
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELAN+MSGGK REA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANLMSGGKRREA 515

Query: 61  QSTLKNEETELESD 75
           QS LKNEETE ESD
Sbjct: 516 QSMLKNEETEHESD 529

[Close]
BLAST of MELO3C017893 vs. TrEMBL
Match: A0A0L9V1Q4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g239300 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.5e-17
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY+ TVELLR+RLLG+G  D + IL DKM++STS +IQELANVM G   R A
Sbjct: 316 MMIDEGIPPYVTTVELLRNRLLGLGLLDHIGILVDKMRQSTSHAIQELANVMIGN--RAA 375

Query: 61  QSTLKNEETELESD 75
            +TL+ +ET++ESD
Sbjct: 376 HNTLRCDETDIESD 387

[Close]
BLAST of MELO3C017893 vs. TrEMBL
Match: A0A0S3RP93_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G234600 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.5e-17
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY+ TVELLR+RLLG+G  D + IL DKM++STS +IQELANVM G   R A
Sbjct: 456 MMIDEGIPPYVTTVELLRNRLLGLGLLDHIGILVDKMRQSTSHAIQELANVMIGN--RAA 515

Query: 61  QSTLKNEETELESD 75
            +TL+ +ET++ESD
Sbjct: 516 HNTLRCDETDIESD 527

[Close]
BLAST of MELO3C017893 vs. TrEMBL
Match: G7L7H7_MEDTR (PPR containing plant-like protein OS=Medicago truncatula GN=MTR_8g102710 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-16
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY  T+E+LR+RLLG+G  D + IL  KM++STSCSIQELAN+M G   R A
Sbjct: 449 MMIDEGIPPYDTTIEMLRNRLLGLGLLDNIEILAAKMRQSTSCSIQELANIMIG--ARSA 508

Query: 61  QSTLKNEETELESD 75
           Q+T + +E+++ESD
Sbjct: 509 QNTWRRDESDIESD 520

[Close]
BLAST of MELO3C017893 vs. TrEMBL
Match: A0A151SD48_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_025435 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           +MIDEGIPPY+ATVELLR+RLLG+GF D + IL DKM++STSC+IQELAN+M     R  
Sbjct: 316 IMIDEGIPPYVATVELLRNRLLGLGFLDHIEILADKMRQSTSCAIQELANIMIVN--RTT 375

Query: 61  QSTLKNEETELESD 75
           ++TL+ +E   ESD
Sbjct: 376 RNTLRRDEMYTESD 387

[Close]
BLAST of MELO3C017893 vs. TAIR10
Match: AT1G52640.1 (AT1G52640.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-13
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY  TVE+LR+RL+G G  D V +L  KM+RS+SCS+Q++A  M G + R  
Sbjct: 444 MMIDEGIPPYSTTVEMLRNRLVGWGQMDVVDVLAGKMERSSSCSVQDMAVEMRGKRRRLG 503

Query: 61  QSTLKNEET----ELESD 75
           + +  +E+     ELE D
Sbjct: 504 RRSENSEDDDDDFELERD 521

[Close]
BLAST of MELO3C017893 vs. NCBI nr
Match: gi|659108995|ref|XP_008454493.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-32
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 515

Query: 61  QSTLKNEETELESD 75
           QSTLKNEETELES+
Sbjct: 516 QSTLKNEETELESN 529

[Close]
BLAST of MELO3C017893 vs. NCBI nr
Match: gi|449469288|ref|XP_004152353.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELAN+MSGGK REA
Sbjct: 456 MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANLMSGGKRREA 515

Query: 61  QSTLKNEETELESD 75
           QS LKNEETE ESD
Sbjct: 516 QSMLKNEETEHESD 529

[Close]
BLAST of MELO3C017893 vs. NCBI nr
Match: gi|502138631|ref|XP_004503476.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Cicer arietinum])

HSP 1 Score: 95.1 bits (235), Expect = 5.4e-17
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           +M+DEGIPPY+ T+E+LR+RLLG+G  D + IL +KM++STSCSIQELAN+M+G   R A
Sbjct: 453 IMVDEGIPPYVTTIEMLRNRLLGLGLLDNIEILANKMRQSTSCSIQELANIMTG--ARAA 512

Query: 61  QSTLKNEETELESD 75
           Q T + +E+++ESD
Sbjct: 513 QKTSRRDESDIESD 524

[Close]
BLAST of MELO3C017893 vs. NCBI nr
Match: gi|951015529|ref|XP_014510873.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial [Vigna radiata var. radiata])

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-17
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPYI TVELLR+RLLG+G  D + IL DKM++STS +IQELAN+M G   R A
Sbjct: 451 MMIDEGIPPYITTVELLRNRLLGLGLLDHIEILVDKMRQSTSHAIQELANIMIGN--RAA 510

Query: 61  QSTLKNEETELESD 75
            +TL+ +ET++ESD
Sbjct: 511 HNTLRRDETDIESD 522

[Close]
BLAST of MELO3C017893 vs. NCBI nr
Match: gi|920705464|gb|KOM48689.1| (hypothetical protein LR48_Vigan07g239300 [Vigna angularis])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 1 

Query: 1   MMIDEGIPPYIATVELLRDRLLGIGFKDQVAILGDKMKRSTSCSIQELANVMSGGKCREA 60
           MMIDEGIPPY+ TVELLR+RLLG+G  D + IL DKM++STS +IQELANVM G   R A
Sbjct: 316 MMIDEGIPPYVTTVELLRNRLLGLGLLDHIGILVDKMRQSTSHAIQELANVMIGN--RAA 375

Query: 61  QSTLKNEETELESD 75
            +TL+ +ET++ESD
Sbjct: 376 HNTLRCDETDIESD 387

The following BLAST results are available for this feature:
BLAST of MELO3C017893 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR78_ARATH4.0e-1250.00Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop... [more]
BLAST of MELO3C017893 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYE8_CUCSA1.1e-2994.59Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004910 PE=4 SV=1[more]
A0A0L9V1Q4_PHAAN8.5e-1764.86Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g239300 PE=4 SV=1[more]
A0A0S3RP93_PHAAN8.5e-1764.86Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G234600 PE=... [more]
G7L7H7_MEDTR1.4e-1660.81PPR containing plant-like protein OS=Medicago truncatula GN=MTR_8g102710 PE=4 SV... [more]
A0A151SD48_CAJCA1.9e-1662.16Uncharacterized protein OS=Cajanus cajan GN=KK1_025435 PE=4 SV=1[more]
BLAST of MELO3C017893 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52640.12.3e-1350.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of MELO3C017893 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108995|ref|XP_008454493.1|3.5e-3298.65PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial ... [more]
gi|449469288|ref|XP_004152353.1|1.6e-2994.59PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial ... [more]
gi|502138631|ref|XP_004503476.1|5.4e-1758.11PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial ... [more]
gi|951015529|ref|XP_014510873.1|7.1e-1764.86PREDICTED: pentatricopeptide repeat-containing protein At1g52640, mitochondrial ... [more]
gi|920705464|gb|KOM48689.1|1.2e-1664.86hypothetical protein LR48_Vigan07g239300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017893T1MELO3C017893T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 3..51
score: 1.1
NoneNo IPR availablePANTHERPTHR24015:SF706SUBFAMILY NOT NAMEDcoord: 3..51
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C017893Cla012706Watermelon (97103) v1mewmB514
MELO3C017893ClCG07G012730Watermelon (Charleston Gray)mewcgB486
MELO3C017893Cla97C07G139530Watermelon (97103) v2mewmbB492
MELO3C017893Cucsa.096500Cucumber (Gy14) v1cgymeB111
MELO3C017893Lsi07G004730Bottle gourd (USVL1VR-Ls)lsimeB447
MELO3C017893CsaV3_4G001470Cucumber (Chinese Long) v3cucmeB315
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C017893Silver-seed gourdcarmeB0134
MELO3C017893Silver-seed gourdcarmeB0127
MELO3C017893Silver-seed gourdcarmeB0210
MELO3C017893Cucumber (Chinese Long) v3cucmeB152
MELO3C017893Cucumber (Chinese Long) v3cucmeB582
MELO3C017893Watermelon (97103) v2mewmbB488
MELO3C017893Watermelon (97103) v2mewmbB508
MELO3C017893Watermelon (97103) v2mewmbB511
MELO3C017893Wax gourdmewgoB569
MELO3C017893Wax gourdmewgoB599
MELO3C017893Wax gourdmewgoB610
MELO3C017893Melon (DHL92) v3.5.1memeB095
MELO3C017893Melon (DHL92) v3.5.1memeB125
MELO3C017893Cucumber (Gy14) v1cgymeB135
MELO3C017893Cucumber (Gy14) v1cgymeB284
MELO3C017893Cucurbita maxima (Rimu)cmameB244
MELO3C017893Cucurbita maxima (Rimu)cmameB444
MELO3C017893Cucurbita moschata (Rifu)cmomeB232
MELO3C017893Cucurbita moschata (Rifu)cmomeB340
MELO3C017893Cucurbita moschata (Rifu)cmomeB436
MELO3C017893Wild cucumber (PI 183967)cpimeB150
MELO3C017893Wild cucumber (PI 183967)cpimeB310
MELO3C017893Wild cucumber (PI 183967)cpimeB570
MELO3C017893Cucumber (Chinese Long) v2cumeB151
MELO3C017893Cucumber (Chinese Long) v2cumeB312
MELO3C017893Cucumber (Chinese Long) v2cumeB560
MELO3C017893Watermelon (Charleston Gray)mewcgB447
MELO3C017893Watermelon (Charleston Gray)mewcgB483
MELO3C017893Watermelon (Charleston Gray)mewcgB503
MELO3C017893Watermelon (97103) v1mewmB492
MELO3C017893Watermelon (97103) v1mewmB502
MELO3C017893Watermelon (97103) v1mewmB549
MELO3C017893Cucurbita pepo (Zucchini)cpemeB533
MELO3C017893Cucurbita pepo (Zucchini)cpemeB588
MELO3C017893Bottle gourd (USVL1VR-Ls)lsimeB223
MELO3C017893Bottle gourd (USVL1VR-Ls)lsimeB422
MELO3C017893Cucumber (Gy14) v2cgybmeB074
MELO3C017893Cucumber (Gy14) v2cgybmeB130
MELO3C017893Cucumber (Gy14) v2cgybmeB131
MELO3C017893Cucumber (Gy14) v2cgybmeB269
MELO3C017893Cucumber (Gy14) v2cgybmeB499