MELO3C016716 (gene) Melon (DHL92) v3.5.1

NameMELO3C016716
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionFiber protein Fb34
Locationchr7 : 2616728 .. 2619854 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGGACATAATTGGAAATGAAGAAAGAAAGCTGGTGAGCTTTTAATTGTTCTGGAAGCATCTCTTTCCTTCTCTATTACACTTTCATTTTCCCCCACCGACAGTCAGGTGACGCATCTAATTCTTCCCTCCAAATTTCCCATTTTACCCTTCTCTTTTTTCTTTCTTTTTTAGCAAAAAAGAAAAGAAAAATTTTTCCCCTAATCTATTGCTTTTATTTTACTTTTTTAGTTCTAAACATGGTGGGTCAACATAGTATTTGTAGATTTCAACTTACATTTTCCTTATATATATATAATCAGACTTCGAGGTTATTATATCTTCAAGTGATAGAATTCGAAAATCGAAAAGAAAAGTCATGACAATATCATTGAATCAAGCTTTCTACGATTTGTAGATTTATAGTTAGTTTTTTCTACTCATTTATTTTTTAATATAACAATGCATGGTAGAGCTTCAACCTTACATGCTAATACCAATTATTACCATTGCAAAGATTATCGATTTTATCTCACAATTTGATGAGTTGTCATAGCATATAGTGGATGTAGAAGAATGAGTTAATATATTTTTTTCATTTAGATAATTTTTAAAAACTAAATTATAAAAAATATACCTATCAACTTTTAGGATGTTCATGAACCTTAAGAGTATTTATGAAATTTTTAAATAGTATTTTTAAACAAAAAATTAATGATTTCCTTCTGAAACTTAAGTATTTTTTTGAATTTTTAAAAGTTTTAAGAATATATTTTTCATGAACAATTTTTATAATTTAACCTAATTTAGATTTGTAATAATATATATGTAATCTAATTAAGCTATACAGCCACCAGCATTCATATCATTCACAAAGACAAAATTTCTTGGGTTGGTTGGAACATAACACTTTGAAAGCTCAGTTTTTTACTTTTATTTTTTTGGACTATTGAATTAATTATACTCATCACACTTTTGAAATTTGAACACAGTATGGGCATAATGGGGATTTGGGTAATGAAAGATGTTGAGAAGTTCTTTTCTCTTTCTAATTTTTTTGCTTCTTCTTCACTGTTTTCATATTCACCAGTGCAGAGCTTCCTCTCTGTTACTCATATAAACCCCAACCAGAAGAGAGAGACAGTACACAGAGAAACATTGCTGAATCTGCTCAACAATTGAGTAGAAAACAGATAACAGGGCAGATCTGGGGAAATTAAGCTTTGGAGCACACAATTTCCTCAATCAATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGTAAGCTTCAGTCTCTCTCTGTCTCTCTCACTCGTTCCATTGTCATTTTCTTTTGTGCTTTTTACTGCAAATTTTGTCGATTTGGGGTTCTTTGCTTCTGGGTCTGTTTTTTTTCTCTGATTCTGTTTGTGGGTCGTTCTGGGTTTGCTGAAATTTGTATTGGAAAATCGAGAATAGATGGCAGAAGAATCTTGGCTTCGCTGAGTTTTTCTTATCTACTACCTAGCAATGGTTTTTAGGTTTCTGCTTTAAATTTTTAGTTTGTTCATTGTTGATGAATCAGGTATTAGTCTTTTCCATTCATTAGGGTTCGCAATTGTGGCTTTAGTAGTTACAAAGCAGGAAAATGGAAAATGATAATCTATTGGTATTAATATTATGCAAGTATAATCATAATGTCAAGAGAAATGGTGAGAAGATTATTGATATTTTCATTATTTGAAGCAAACTAACTAAGAATACCAAGATTACTGATAATTCAATAGTCACTATATTTTGGCTTTTCCAAAATGCAACTCTGAACTGTTAAGTGAAATAGAAGGGAACTTCCATAGATTTCTCTGCTTCGTACTAAGCACACTGATTCGAAAAGGTCCAGGCGTTTGACAATGGTAAAATTGAGATGGCTCTTCTCTTGTGTTTCCACCATCACCCACTCATTCCAATTGCCATGAATCTGATCTTGCTGATAAGCTGTATCAAAGGGAAGCCTGTATATTTGAACAAGCAAAGTCGATAACTCGTTTTGTTCTGTACCCTTTTGGCTTCTTCTTTGCTTAAAAGATCAAGTAGTTGGTTTCAACTGATTATTAATGCCTATATGATAATGTTACATTGATTTGAGTGGTGTTGGTAAATTTATCTGCAAATTGGTTGATTGTTAAGAAGTAATGCATTGTGTAAATATTGTTTGATGACAGGCTAACGTCGTGCAAGATAAAGAAAAGGACTACAACTATTGTGTGTATGATTCTGACGTCTCAACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGTTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATCGGCTGTTATCCTATTCATAATCTGCTGGTAAGTGATGAACCTATTTGTGATCTTCACTCCATCAGTTTAGCCTTGAGCAGAAAACTTCAAACTAAAGTATCTTAACCCAATACACACACAATCTTGCAGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCAGTAAGGAATGCCTACCACACCAAGTACCGAACCATGTTCGGTGACAATCCTCCATCATGCCGAACTTTGAGGAAGGGAGTTTTCGGTGCTGGTGCAGCATTCATTTTCCTCAATGCAATTGTATCAGAACTCTACTATGTATTCTACTCAAAGGCAAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTTGGCATGGGAACCTACAAATGAGTGAATGTTTAGTCAAGCTTAATAGGTTACACTTAAGCTTCCATCGACATTCCCAGGACGATTTTGAGATAATTTTACATATCAACTACTGGTTTTAGTTAGGAAGAAATGTCAGTATCATAATTTTTACTGTGTAGTTATTTTAACCAGGGCTGCTGGGCTTTTTTTTTTCTTTTTCATATTGGGTGGATTGTTACATTTGTATTGACAATAAGAGACTTCCTACAAATAGTTGTATTTTTTATGAGACCTCAGTGACATATATGTTCTTGTGTTTTCCATTTTTTATCAATGGGTATTTGATATATTCCAGAAGAAACTTA

mRNA sequence

AGAGGACATAATTGGAAATGAAGAAAGAAAGCTGGTGAGCTTTTAATTGTTCTGGAAGCATCTCTTTCCTTCTCTATTACACTTTCATTTTCCCCCACCGACAGTCAGTGCAGAGCTTCCTCTCTGTTACTCATATAAACCCCAACCAGAAGAGAGAGACAGTACACAGAGAAACATTGCTGAATCTGCTCAACAATTGAGTAGAAAACAGATAACAGGGCAGATCTGGGGAAATTAAGCTTTGGAGCACACAATTTCCTCAATCAATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCTAACGTCGTGCAAGATAAAGAAAAGGACTACAACTATTGTGTGTATGATTCTGACGTCTCAACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGTTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATCGGCTGTTATCCTATTCATAATCTGCTGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCAGTAAGGAATGCCTACCACACCAAGTACCGAACCATGTTCGGTGACAATCCTCCATCATGCCGAACTTTGAGGAAGGGAGTTTTCGGTGCTGGTGCAGCATTCATTTTCCTCAATGCAATTGTATCAGAACTCTACTATGTATTCTACTCAAAGGCAAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTTGGCATGGGAACCTACAAATGAGTGAATGTTTAGTCAAGCTTAATAGGTTACACTTAAGCTTCCATCGACATTCCCAGGACGATTTTGAGATAATTTTACATATCAACTACTGGTTTTAGTTAGGAAGAAATGTCAGTATCATAATTTTTACTGTGTAGTTATTTTAACCAGGGCTGCTGGGCTTTTTTTTTTCTTTTTCATATTGGGTGGATTGTTACATTTGTATTGACAATAAGAGACTTCCTACAAATAGTTGTATTTTTTATGAGACCTCAGTGACATATATGTTCTTGTGTTTTCCATTTTTTATCAATGGGTATTTGATATATTCCAGAAGAAACTTA

Coding sequence (CDS)

ATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATGTTATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCTAACGTCGTGCAAGATAAAGAAAAGGACTACAACTATTGTGTGTATGATTCTGACGTCTCAACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGTTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATCGGCTGTTATCCTATTCATAATCTGCTGGGTGTTTTTCTTCATTGCTGAGGTTTGCTTGTTTGCGGGTTCAGTAAGGAATGCCTACCACACCAAGTACCGAACCATGTTCGGTGACAATCCTCCATCATGCCGAACTTTGAGGAAGGGAGTTTTCGGTGCTGGTGCAGCATTCATTTTCCTCAATGCAATTGTATCAGAACTCTACTATGTATTCTACTCAAAGGCAAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTTGGCATGGGAACCTACAAATGA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009606DUF1218
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU52163melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016716T2MELO3C016716T2mRNA
MELO3C016716T1MELO3C016716T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU52163MU52163transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 58..152
score: 4.5
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..183
score: 7.3E
NoneNo IPR availablePANTHERPTHR31769:SF16SUBFAMILY NOT NAMEDcoord: 1..183
score: 7.3E