Cucsa.123320 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.123320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Fiber protein Fb34
Location	scaffold01000 : 575661 .. 577894 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTGAAAGCTCAGTTTTTTATTTTGGTTGATTAAATTAATTGTAGAGATCAAACTTTTGAAATTTCGACACAATATGGGCATAATGGGGATTTGGGTAACGAAAGATGTTGAGAAGTTCCTTTCTCTTTCTAATTTTTTTTTTGCTTCTTCTTCACTGTTTTCATTTTCAACACTGCAGAGCTTCCTCTCTGTTACTCATATAAACCCCAACCAGAAGAGAGAGACAGTACACAGAGAAACATTGCTGAATCTGCTCGACAATTGAGTAGAAAACAGATAACAGAGCCAGATCTGGGGGAAATTAAGCTTTTGAAGTAGAAGCACACAATTTCCTCAATCAATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATATCATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGTAAGCTTCAGTTTCTCTCTCTCTCTCTCTCTCATTCCATTGTCGTTTTCTTTTGTGCTTTTTACTGCAAATTTTGTCGATTTGGGGTTCTTTGCTTCCTGGGTCTGTTTTATTTCTCTGATTCTGTTTGTGGGTCGTTCCGAGTTTGCTGAAATTTGTATGGAAAATCGAGAATAGATGACAGAAGAATCTTGGCTTTTCTGAGTTTTTCTTACCTATCCTAACAATGGGTTTTAGGTTTCTGCTTTAAATTTTTAGTTTTTCATTGTTGATGAATGCGGTATTAGTCCATTTCCATTCATTAGGGTTCATAATTGTCGTTTAGTAGTTACAAAGCAGGAAAATGGAAAATGATAATCTATTGGTATTAATATTATGCAAGTACAATCATAATGTGAAGAGAAATGGTGAGAAGATTATTGATATTTTCATTATTTGAAGCAAACTAACCATGAATGTAATTCATTAGTCACTGTTTTTTGGCTTTTCCAAGATGTAATTCTGAACTGTTCTTAAGTGAAATAGAAGGGAACTTCCATAGATTTCTCTGTTTCTTACTAAGCACACTAATTCGAAAAGGTGAGGCGTTTGCAATCGATCTAGACAATGGTAAAATTGAGATAGCTCTTCTCTTGTGTTTCCACCATCTCCCACTCATTCCTATCTCCATGAATCTGATCTTGCTGATAAGCTGTATCAAAGGGAAGCCTGTATATTTGAACAAGCAAAGTCGATAACTTGTTTTGTTCTGTACCCTTTTGGCTTCTTCTTTACTTAACAGATCAAATAGTTGGTTTCAACTGATTAGTAATGCCTATATGATAATGGTACATTGATTTTGAGTGGTGTTGGTAAATTTATTTGCAAATTGGTTGATTGTTAAGAATTAATCGCATTGTGTAAAAATTGTTTGATAACAGGCTAACGTCGTGCAAGATAAAGAAAAGGAATACAACTATTGTGTGTATGATTCTGACATCTCGACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGCTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATGGGCTGTTATCCTATTCATAATCTGCTGGTAAGTGATGAACCTATTTGTGATCTTCACTCCACCAGTTTAGCCTTGAGCAGAAAACTTGAAACTAAAGGATCTTAACCCAATACACACACAATCTTGCAGGGTGTTTTTCTTCATTGCCGAAGTTTGCTTGTTTGCGGGTTCAGTAAGGAACGCATACCACACCAAATACCGAACCATGTTCGGTGACAATCCTCCATCATGCCAAACTTTGAGGAAGGGAGTTTTCGGCGCTGGTGCAGCATTCATTTTCCTCAATGCGATTGTATCAGAACTCTACTATGTATTCTACTCGAAGGCGAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTCGGCATGGGAACCTACAAATGAGTGAATGTTTAGTCAAGCTTAATAGTTTACGCCTAAGCTTCCATCAATGTTCCCAGATCGATTTTGAGATAATTTTACATATCAACTACTGGTTTTAGTTAGGAGGAAATGAATGTGAGTATCATAATTTTTAGTGTGTAGTTCTTTTAACCAGGGCTGCTGGGCCTGTTCTTTTTCATATTGGGTGGATTGTTACATTTGTATTGACAATAAGAGACTTCCTATGGATAGTTGTATTTTTTTATGAGACCTCAGTGACATATATGTTCTTGTGATTTCCATTTTGATGAATGAGTACTTGATAATATTCCAGA

mRNA sequence

CACTTGAAAGCTCAGTTTTTTATTTTGGTTGATTAAATTAATTGTAGAGATCAAACTTTTGAAATTTCGACACAATATGGGCATAATGGGGATTTGGGTAACGAAAGATGTTGAGAAGTTCCTTTCTCTTTCTAATTTTTTTTTTGCTTCTTCTTCACTGTTTTCATTTTCAACACTGCAGAGCTTCCTCTCTGTTACTCATATAAACCCCAACCAGAAGAGAGAGACAGTACACAGAGAAACATTGCTGAATCTGCTCGACAATTGAGTAGAAAACAGATAACAGAGCCAGATCTGGGGGAAATTAAGCTTTTGAAGTAGAAGCACACAATTTCCTCAATCAATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATATCATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCTAACGTCGTGCAAGATAAAGAAAAGGAATACAACTATTGTGTGTATGATTCTGACATCTCGACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGCTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATGGGCTGTTATCCTATTCATAATCTGCTGGGTGTTTTTCTTCATTGCCGAAGTTTGCTTGTTTGCGGGTTCAGTAAGGAACGCATACCACACCAAATACCGAACCATGTTCGGTGACAATCCTCCATCATGCCAAACTTTGAGGAAGGGAGTTTTCGGCGCTGGTGCAGCATTCATTTTCCTCAATGCGATTGTATCAGAACTCTACTATGTATTCTACTCGAAGGCGAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTCGGCATGGGAACCTACAAATGAGTGAATGTTTAGTCAAGCTTAATAGTTTACGCCTAAGCTTCCATCAATGTTCCCAGATCGATTTTGAGATAATTTTACATATCAACTACTGGTTTTAGTTAGGAGGAAATGAATGTGAGTATCATAATTTTTAGTGTGTAGTTCTTTTAACCAGGGCTGCTGGGCCTGTTCTTTTTCATATTGGGTGGATTGTTACATTTGTATTGACAATAAGAGACTTCCTATGGATAGTTGTATTTTTTTATGAGACCTCAGTGACATATATGTTCTTGTGATTTCCATTTTGATGAATGAGTACTTGATAATATTCCAGA

Coding sequence (CDS)

ATGGCTTCCAAATTGATTCTGATTATAGTTTTTGTTCTTGATATCATTGCTTTTGGCCTGGCTGTTGCCGCTGAGCAAAGAAGAAGCACTGCTAACGTCGTGCAAGATAAAGAAAAGGAATACAACTATTGTGTGTATGATTCTGACATCTCGACAGGCTATGGAGTTGGTGCTTTTCTACTTCTCATGGCCAGCCAGACCCTCATAATGGCAGCTAGCCGATGCTTTTGCTGTGGAAAGTCGTTAAGTCCTGGAGGTTCAAGGGCATGGGCTGTTATCCTATTCATAATCTGCTGGGTGTTTTTCTTCATTGCCGAAGTTTGCTTGTTTGCGGGTTCAGTAAGGAACGCATACCACACCAAATACCGAACCATGTTCGGTGACAATCCTCCATCATGCCAAACTTTGAGGAAGGGAGTTTTCGGCGCTGGTGCAGCATTCATTTTCCTCAATGCGATTGTATCAGAACTCTACTATGTATTCTACTCGAAGGCGAGAGAAAGCTTTCTTCCATACGGCGGAGAAACTGGCGTCGGCATGGGAACCTACAAATGA

Protein sequence

MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFLLLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHTKYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGMGTYK*

Homology

[Close]

BLAST of Cucsa.123320 vs. TrEMBL
Match: A0A0A0L071_CUCSA (Fiber protein Fb34 OS=Cucumis sativus GN=Csa_4G638370 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.4e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. TrEMBL
Match: V4ULR8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009639mg PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-84
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL++  VFV D+IAFGLAVAAEQRRSTA +  D EK YNYC+YDSDISTG GVGAFL
Sbjct: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            L+ASQ LIM ASRCFCCGK LSPGGSRAWAVILFIICWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRT++G+NPPSCQT+RKGVF AGAAF+F  AIVSE YY+ YSKARESF PYGGETGVGM
Sbjct: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. TrEMBL
Match: A0A067GFD0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030041mg PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-84
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL++  VFV D+IAFGLAVAAEQRRSTA +  D EK YNYC+YDSDISTG GVGAFL
Sbjct: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            L+ASQ LIM ASRCFCCGK LSPGGSRAWAVILFIICWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRT++G+NPPSCQT+RKGVF AGAAF+F  AIVSE YY+ YSKARESF PYGGETGVGM
Sbjct: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. TrEMBL
Match: A0A067JW17_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.8e-83
Identity = 150/184 (81.52%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL+LI VF+ D+IAFGLAVAAEQRRSTA + QD E  YNYCVYDSDI+TGYGVGAFL
Sbjct: 1   MASKLLLITVFIFDLIAFGLAVAAEQRRSTAVIKQDSEVNYNYCVYDSDIATGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            LM SQ +IM AS+CFCCGK L+PGGSRAWAVILFI CWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLMVSQVIIMVASQCFCCGKPLNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRT+F DNPP CQTLRKGVFGAGAAF    AIVSE YYV YSKAR+ F PYGGETGVGM
Sbjct: 121 KYRTVFSDNPPDCQTLRKGVFGAGAAFTLFTAIVSEFYYVSYSKARDGFKPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. TrEMBL
Match: M5WVF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012067mg PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.7e-82
Identity = 146/184 (79.35%), Postives = 162/184 (88.04%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL+LI VF++++IAFGLAVAAEQRRS+A +VQD E  YNYCVYDSDI+TGYGVGAFL
Sbjct: 1   MASKLLLIAVFIVNVIAFGLAVAAEQRRSSARIVQDNEVNYNYCVYDSDIATGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            L+  Q +IMAASRCFCCGK LSPGGSRAWAVILFI CW+FFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLLVGQVIIMAASRCFCCGKPLSPGGSRAWAVILFITCWIFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
            YRT+F +NPP CQTLRKGVFGAGAAFIFL  IVSE YYVFYS+AR SF PYGGE  VG+
Sbjct: 121 HYRTIFSENPPDCQTLRKGVFGAGAAFIFLTTIVSEFYYVFYSRARGSFQPYGGEAAVGL 180

Query: 181 GTYK 185
           GT+K
Sbjct: 181 GTFK 184

[Close]

BLAST of Cucsa.123320 vs. TAIR10
Match: AT4G27435.1 (AT4G27435.1 Protein of unknown function (DUF1218))

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-70
Identity = 128/173 (73.99%), Postives = 143/173 (82.66%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASK++  IVFV ++IAFGLAVAAEQRRSTA VVQD E +YNYCVYDSD +TGYGVGAFL
Sbjct: 1   MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
             +ASQ LIM  SRCFCCGK L PGGSRA A+ILFI+ W+FF IAE+CL AGSV NAYHT
Sbjct: 61  FSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFL-PY 173
           KYRTMF DNPP CQTLRKGVF AGA+F+F NAIVS+ YY FY  A E+ L PY
Sbjct: 121 KYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEASLSPY 173

[Close]

BLAST of Cucsa.123320 vs. TAIR10
Match: AT3G15480.1 (AT3G15480.1 Protein of unknown function (DUF1218))

HSP 1 Score: 246.9 bits (629), Expect = 9.7e-66
Identity = 115/170 (67.65%), Postives = 143/170 (84.12%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL++IIVF+LD+IA GLA+AAEQRRS   V  D++K+Y+YCVY +DI+T YG GAF+
Sbjct: 1   MASKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFV 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LL  SQ LIMAASRCFCCGKSL+PGGSRA A+ILF+ICWVFF IAE+CL A S+RNAYHT
Sbjct: 61  LLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHT 120

Query: 121 KYRTMFG-DNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESF 170
           +YR M+  ++PPSC+ +RKGVF AGAAF    AIVS+ YYV YS+AR+++
Sbjct: 121 QYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAY 170

[Close]

BLAST of Cucsa.123320 vs. TAIR10
Match: AT1G52910.1 (AT1G52910.1 Protein of unknown function (DUF1218))

HSP 1 Score: 241.9 bits (616), Expect = 3.1e-64
Identity = 112/170 (65.88%), Postives = 137/170 (80.59%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL++IIVF+LD+IA GLA+AAEQRRS   VV D EKE+ +C Y SDI+T YG GAF+
Sbjct: 1   MASKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFV 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LL  SQ +IM ASRCFCCGK+L PGGSRA  ++LF+ICWVFF IAEVCL AGS+RNAYHT
Sbjct: 61  LLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHT 120

Query: 121 KYRTMFG-DNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESF 170
            YR M+  +NPPSC+ +RKGVF AGA+F    AIVS+ YY+ YS+AR+ +
Sbjct: 121 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARDGY 170

[Close]

BLAST of Cucsa.123320 vs. TAIR10
Match: AT1G61065.1 (AT1G61065.1 Protein of unknown function (DUF1218))

HSP 1 Score: 238.0 bits (606), Expect = 4.5e-63
Identity = 113/167 (67.66%), Postives = 140/167 (83.83%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MAS L+L++VFV D+IAFGLAVAAEQRR+T  + ++  ++ +YCVYD DI+TG GVG+FL
Sbjct: 1   MASVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRES-RDLSYCVYDKDIATGLGVGSFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           +L+ASQ LIM ASRC CCG++L+P GSR+WA+ LFI  WVFFFIA+VCL AGSVRNAYHT
Sbjct: 61  VLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARE 168
           KYR  FG+  PSC++LRKGVFGAGAAFI L  IVSELYYV  S+A++
Sbjct: 121 KYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD 166

[Close]

BLAST of Cucsa.123320 vs. TAIR10
Match: AT1G13380.1 (AT1G13380.1 Protein of unknown function (DUF1218))

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-44
Identity = 78/167 (46.71%), Postives = 116/167 (69.46%), Query Frame = 1


Query: 2   ASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFLL 61
           AS L+ I+V  L ++AFG ++AAE+RRS    +QD      +CVYDSD++TGYGVGAFL 
Sbjct: 6   ASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLF 65

Query: 62  LMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHTK 121
           L++S++L+M+ ++C C G+ L+PG  RAW++I FI  W+ F +AE C+ AG+ +NAYHTK
Sbjct: 66  LLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query: 122 YRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARES 169
           Y         SC +LRKG+F AGA FI    +++  YY++++K+  S
Sbjct: 126 Y---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSS 169

[Close]

BLAST of Cucsa.123320 vs. NCBI nr
Match: gi|778695977|ref|XP_011654078.1| (PREDICTED: uncharacterized protein LOC101208795 [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 2.0e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. NCBI nr
Match: gi|659103116|ref|XP_008452482.1| (PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 9.1e-98
Identity = 179/184 (97.28%), Postives = 183/184 (99.46%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKLILIIVFVLD+IAFGLAVAAEQRRSTANVVQDKEK+YNYCVYDSD+STGYGVGAFL
Sbjct: 1   MASKLILIIVFVLDVIAFGLAVAAEQRRSTANVVQDKEKDYNYCVYDSDVSTGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
           LLMASQTLIMAASRCFCCGKSLSPGGSRA AVILFIICWVFFFIAEVCLFAGSVRNAYHT
Sbjct: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRASAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRTMFGDNPPSC+TLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM
Sbjct: 121 KYRTMFGDNPPSCRTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. NCBI nr
Match: gi|567919848|ref|XP_006451930.1| (hypothetical protein CICLE_v10009639mg [Citrus clementina])

HSP 1 Score: 320.5 bits (820), Expect = 2.0e-84
Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL++  VFV D+IAFGLAVAAEQRRSTA +  D EK YNYC+YDSDISTG GVGAFL
Sbjct: 1   MASKLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            L+ASQ LIM ASRCFCCGK LSPGGSRAWAVILFIICWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRT++G+NPPSCQT+RKGVF AGAAF+F  AIVSE YY+ YSKARESF PYGGETGVGM
Sbjct: 121 KYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. NCBI nr
Match: gi|802716199|ref|XP_012084918.1| (PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas])

HSP 1 Score: 315.1 bits (806), Expect = 8.3e-83
Identity = 150/184 (81.52%), Postives = 160/184 (86.96%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL+LI VF+ D+IAFGLAVAAEQRRSTA + QD E  YNYCVYDSDI+TGYGVGAFL
Sbjct: 1   MASKLLLITVFIFDLIAFGLAVAAEQRRSTAVIKQDSEVNYNYCVYDSDIATGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            LM SQ +IM AS+CFCCGK L+PGGSRAWAVILFI CWVFFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLMVSQVIIMVASQCFCCGKPLNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
           KYRT+F DNPP CQTLRKGVFGAGAAF    AIVSE YYV YSKAR+ F PYGGETGVGM
Sbjct: 121 KYRTVFSDNPPDCQTLRKGVFGAGAAFTLFTAIVSEFYYVSYSKARDGFKPYGGETGVGM 180

Query: 181 GTYK 185
           GTYK
Sbjct: 181 GTYK 184

[Close]

BLAST of Cucsa.123320 vs. NCBI nr
Match: gi|595874628|ref|XP_007212124.1| (hypothetical protein PRUPE_ppa012067mg [Prunus persica])

HSP 1 Score: 312.4 bits (799), Expect = 5.4e-82
Identity = 146/184 (79.35%), Postives = 162/184 (88.04%), Query Frame = 1


Query: 1   MASKLILIIVFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFL 60
           MASKL+LI VF++++IAFGLAVAAEQRRS+A +VQD E  YNYCVYDSDI+TGYGVGAFL
Sbjct: 1   MASKLLLIAVFIVNVIAFGLAVAAEQRRSSARIVQDNEVNYNYCVYDSDIATGYGVGAFL 60

Query: 61  LLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHT 120
            L+  Q +IMAASRCFCCGK LSPGGSRAWAVILFI CW+FFFIAEVCL AGSVRNAYHT
Sbjct: 61  FLLVGQVIIMAASRCFCCGKPLSPGGSRAWAVILFITCWIFFFIAEVCLLAGSVRNAYHT 120

Query: 121 KYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGM 180
            YRT+F +NPP CQTLRKGVFGAGAAFIFL  IVSE YYVFYS+AR SF PYGGE  VG+
Sbjct: 121 HYRTIFSENPPDCQTLRKGVFGAGAAFIFLTTIVSEFYYVFYSRARGSFQPYGGEAAVGL 180

Query: 181 GTYK 185
           GT+K
Sbjct: 181 GTFK 184

The following BLAST results are available for this feature:

BLAST of Cucsa.123320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L071_CUCSA	1.4e-100	100.00	Fiber protein Fb34 OS=Cucumis sativus GN=Csa_4G638370 PE=4 SV=1	[more]
V4ULR8_9ROSI	1.4e-84	82.61	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009639mg PE=4 SV=1	[more]
A0A067GFD0_CITSI	1.4e-84	82.61	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030041mg PE=4 SV=1	[more]
A0A067JW17_JATCU	5.8e-83	81.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20958 PE=4 SV=1	[more]
M5WVF4_PRUPE	3.7e-82	79.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012067mg PE=4 SV=1	[more]

BLAST of Cucsa.123320 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27435.1	1.7e-70	73.99	Protein of unknown function (DUF1218)	[more]
AT3G15480.1	9.7e-66	67.65	Protein of unknown function (DUF1218)	[more]
AT1G52910.1	3.1e-64	65.88	Protein of unknown function (DUF1218)	[more]
AT1G61065.1	4.5e-63	67.66	Protein of unknown function (DUF1218)	[more]
AT1G13380.1	3.6e-44	46.71	Protein of unknown function (DUF1218)	[more]

BLAST of Cucsa.123320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695977\|ref\|XP_011654078.1\|	2.0e-100	100.00	PREDICTED: uncharacterized protein LOC101208795 [Cucumis sativus]	[more]
gi\|659103116\|ref\|XP_008452482.1\|	9.1e-98	97.28	PREDICTED: uncharacterized protein LOC103493502 [Cucumis melo]	[more]
gi\|567919848\|ref\|XP_006451930.1\|	2.0e-84	82.61	hypothetical protein CICLE_v10009639mg [Citrus clementina]	[more]
gi\|802716199\|ref\|XP_012084918.1\|	8.3e-83	81.52	PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]	[more]
gi\|595874628\|ref\|XP_007212124.1\|	5.4e-82	79.35	hypothetical protein PRUPE_ppa012067mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009606	DUF1218

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.123320.1	Cucsa.123320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009606	Protein of unknown function DUF1218	PFAM	PF06749	DUF1218	coord: 58..152 score: 1.5
None	No IPR available	PANTHER	PTHR31769	FAMILY NOT NAMED	coord: 1..183 score: 1.3E
None	No IPR available	PANTHER	PTHR31769:SF16	SUBFAMILY NOT NAMED	coord: 1..183 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.123320	Cla023402	Watermelon (97103) v1	cgywmB198
Cucsa.123320	Csa1G073650	Cucumber (Chinese Long) v2	cgycuB161
Cucsa.123320	Csa4G638370	Cucumber (Chinese Long) v2	cgycuB163
Cucsa.123320	MELO3C016716	Melon (DHL92) v3.5.1	cgymeB189
Cucsa.123320	ClCG11G018240	Watermelon (Charleston Gray)	cgywcgB192
Cucsa.123320	CSPI04G23670	Wild cucumber (PI 183967)	cgycpiB164
Cucsa.123320	CSPI01G11910	Wild cucumber (PI 183967)	cgycpiB162
Cucsa.123320	CmaCh09G008810	Cucurbita maxima (Rimu)	cgycmaB0319
Cucsa.123320	CmoCh09G008710	Cucurbita moschata (Rifu)	cgycmoB0316
Cucsa.123320	Lsi02G007330	Bottle gourd (USVL1VR-Ls)	cgylsiB184
Cucsa.123320	Lsi04G013170	Bottle gourd (USVL1VR-Ls)	cgylsiB187
Cucsa.123320	Cp4.1LG06g07000	Cucurbita pepo (Zucchini)	cgycpeB0312
Cucsa.123320	MELO3C002581.2	Melon (DHL92) v3.6.1	cgymedB184
Cucsa.123320	MELO3C016716.2	Melon (DHL92) v3.6.1	cgymedB187
Cucsa.123320	CsaV3_1G012080	Cucumber (Chinese Long) v3	cgycucB165
Cucsa.123320	CsaV3_4G033900	Cucumber (Chinese Long) v3	cgycucB167
Cucsa.123320	Cla97C11G224320	Watermelon (97103) v2	cgywmbB189
Cucsa.123320	Bhi09G002781	Wax gourd	cgywgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.123320	Silver-seed gourd	carcgyB0365
Cucsa.123320	Cucumber (Gy14) v1	cgycgyB072
Cucsa.123320	Cucurbita maxima (Rimu)	cgycmaB0322
Cucsa.123320	Cucurbita moschata (Rifu)	cgycmoB0318
Cucsa.123320	Wild cucumber (PI 183967)	cgycpiB163
Cucsa.123320	Cucumber (Chinese Long) v2	cgycuB162
Cucsa.123320	Melon (DHL92) v3.5.1	cgymeB187
Cucsa.123320	Watermelon (Charleston Gray)	cgywcgB194
Cucsa.123320	Watermelon (Charleston Gray)	cgywcgB195
Cucsa.123320	Watermelon (97103) v1	cgywmB195
Cucsa.123320	Watermelon (97103) v1	cgywmB196
Cucsa.123320	Cucurbita pepo (Zucchini)	cgycpeB0310