MELO3C016613 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016613
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Integration host factor subunit beta
Location	chr6 : 28431901 .. 28432558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTAGGTCTCTTTTTTCTTCCACACTCCCTACGGCGGCCACAGACCGACACACCAGCCTCTCTCTGTATCAATTTTCTCTCCTTCTCTTATTCTGTAGCATAGCCTCACTCCCCAAGCTGTCATTTGCACAATGCTTCCATCTTGAGATCTCTCGTTGTGATTGAACTTTTTCTGTATTTTCTTTCGTTCTTCTCCATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACTCGAACCTTTTAAATTCAAGCCGAACATACGGCCATCGCATTGCTCGCACTCTAATCCTCAGCCTCATGAGAGGATTATGGTTCCTGGACGCTACATTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAGCTCCAGCTTCAAGGGCTCCAGAGTCATTTCCTAACCCGTCACTTCAATCTCCACCTGGTATCTGTCATTTTCGTTTATTTAGCTTATAATTTTTTGTTAATTGAAAGTAATAGTTTTAGTTTAATCAACTGCCCTTTTTAATATTCTATGTAGAGGAATTTTATTGCTTCAAGTTCAATATCCTTACTCATACTGGTGCATATTGTTAA

mRNA sequence

ACCTAGGTCTCTTTTTTCTTCCACACTCCCTACGGCGGCCACAGACCGACACACCAGCCTCTCTCTGTATCAATTTTCTCTCCTTCTCTTATTCTGTAGCATAGCCTCACTCCCCAAGCTGTCATTTGCACAATGCTTCCATCTTGAGATCTCTCGTTGTGATTGAACTTTTTCTGTATTTTCTTTCGTTCTTCTCCATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACTCGAACCTTTTAAATTCAAGCCGAACATACGGCCATCGCATTGCTCGCACTCTAATCCTCAGCCTCATGAGAGGATTATGGTTCCTGGACGCTACATTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAGCTCCAGCTTCAAGGGCTCCAGAGTCATTTCCTAACCCGTCACTTCAATCTCCACCTGAGGAATTTTATTGCTTCAAGTTCAATATCCTTACTCATACTGGTGCATATTGTTAA

Coding sequence (CDS)

ATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACTCGAACCTTTTAAATTCAAGCCGAACATACGGCCATCGCATTGCTCGCACTCTAATCCTCAGCCTCATGAGAGGATTATGGTTCCTGGACGCTACATTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAGCTCCAGCTTCAAGGGCTCCAGAGTCATTTCCTAACCCGTCACTTCAATCTCCACCTGAGGAATTTTATTGCTTCAAGTTCAATATCCTTACTCATACTGGTGCATATTGTTAA

Protein sequence

MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPHERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPPEEFYCFKFNILTHTGAYC*

Homology

[Close]

BLAST of MELO3C016613 vs. TrEMBL
Match: A0A0A0L2H7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G088970 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.3e-43
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of MELO3C016613 vs. TrEMBL
Match: A0A151RPX5_CAJCA (WD repeat-containing protein 25 OS=Cajanus cajan GN=KK1_033890 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1


Query: 1  MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
          M+ L  AYSN+SDD D+E++PK +RL+LSSS   +P L  F   P        H    P 
Sbjct: 1  MDLLCNAYSNTSDDDDDEEQPKRQRLSLSSSNPPKPRLH-FSSPPLF-----DHQTQPP- 60

Query: 61 ERIMVPGRYISKRERALLSSAPAS-RAPESFPNPS 95
              +PGRY+SKR+RAL++  P S   P+  P PS
Sbjct: 61 ----IPGRYVSKRQRALMAQTPPSPPPPQPVPVPS 84

[Close]

BLAST of MELO3C016613 vs. TrEMBL
Match: A0A078HZR8_BRANA (BnaA03g11830D protein OS=Brassica napus GN=BnaA03g11830D PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEE--DEPKPKRLALSSSPSKRPELEPFK--FKPNIRPS--HCSH 60
           M+ L  +Y+N SDD  E   D     + A  S PSKRP  EP +  +KP  +P+  + S+
Sbjct: 1   MDLLRNSYANDSDDEPEPVTDNRLTSKTATPSLPSKRPYPEPEERQYKPIRKPNPPYSSY 60

Query: 61  SNPQPHER---IMVPGRYISKRERALLSSAPASRAPESFPNPSLQSP 99
           S+PQ       I  PGRY+SKRER+LL+S   S AP     PS+ SP
Sbjct: 61  SDPQTSSSTIPITFPGRYVSKRERSLLAS--LSTAPTQIQKPSVNSP 105

[Close]

BLAST of MELO3C016613 vs. TrEMBL
Match: A0A0D3B3H7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-07
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEE--DEPKPKRLALSSSPSKRPELEPFK--FKPNIRPS--HCSH 60
           M+ L  +Y+N SDD  E   D     + A  S PSKRP  EP +  +KP  +P+  + S+
Sbjct: 1   MDLLRNSYANDSDDEPEPVTDNRLTSKTATPSLPSKRPYPEPEEQHYKPARKPNPPYSSY 60

Query: 61  SNPQPHERIMVPGRYISKRERAL---LSSAPA-SRAPESFPNPSLQSP 99
           S+PQ      +PGRY+SKRER+L   LS+AP  +++ +S   PS+ SP
Sbjct: 61  SDPQTSSSA-IPGRYVSKRERSLLASLSTAPTQNQSSDSIHKPSVSSP 107

[Close]

BLAST of MELO3C016613 vs. TrEMBL
Match: A0A078I1Y1_BRANA (BnaC03g14540D protein OS=Brassica napus GN=BnaC03g14540D PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-07
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEE--DEPKPKRLALSSSPSKRPELEPFK--FKPNIRPS--HCSH 60
           M+ L  +Y+N SDD  E   D     + A  S PSKRP  EP +  +KP  +P+  + S+
Sbjct: 1   MDLLRNSYANDSDDEPEPVTDNRLTSKTATPSLPSKRPYPEPEEQHYKPARKPNPPYSSY 60

Query: 61  SNPQPHERIMVPGRYISKRERAL---LSSAPA-SRAPESFPNPSLQSP 99
           S+PQ      +PGRY+SKRER+L   LS+AP  +++ +S   PS+ SP
Sbjct: 61  SDPQTSSSA-IPGRYVSKRERSLLASLSTAPTQNQSSDSIHKPSVSSP 107

[Close]

BLAST of MELO3C016613 vs. TAIR10
Match: AT5G54520.1 (AT5G54520.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDE---EDEPKPKRLALSSSPSKRPELEPFK--FKPNIRP--SHCS 60
           M+ +  +Y+N SDD  E    +    K  A  S PSKRP   P +  +KP  RP   H S
Sbjct: 1   MDLICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRPYPVPEERQYKPPRRPYPPHGS 60

Query: 61  HSNPQPHER--------IMVPGRYISKRERALLSSAPASRAPE 89
           +S  Q            + VPGRY+SKRER+LL+S      P+
Sbjct: 61  YSESQTSSSFSIPVPVPVPVPGRYVSKRERSLLASLSTIPTPD 103

[Close]

BLAST of MELO3C016613 vs. NCBI nr
Match: gi|659102838|ref|XP_008452340.1| (PREDICTED: WD repeat-containing protein 25 [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 2.6e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 100
           ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of MELO3C016613 vs. NCBI nr
Match: gi|700201042|gb|KGN56175.1| (hypothetical protein Csa_3G088970 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 9.1e-43
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of MELO3C016613 vs. NCBI nr
Match: gi|778676184|ref|XP_011650540.1| (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 9.1e-43
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of MELO3C016613 vs. NCBI nr
Match: gi|1012333206|gb|KYP44608.1| (WD repeat-containing protein 25 [Cajanus cajan])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1


Query: 1  MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
          M+ L  AYSN+SDD D+E++PK +RL+LSSS   +P L  F   P        H    P 
Sbjct: 1  MDLLCNAYSNTSDDDDDEEQPKRQRLSLSSSNPPKPRLH-FSSPPLF-----DHQTQPP- 60

Query: 61 ERIMVPGRYISKRERALLSSAPAS-RAPESFPNPS 95
              +PGRY+SKR+RAL++  P S   P+  P PS
Sbjct: 61 ----IPGRYVSKRQRALMAQTPPSPPPPQPVPVPS 84

[Close]

BLAST of MELO3C016613 vs. NCBI nr
Match: gi|674889667|emb|CDY43036.1| (BnaA03g11830D [Brassica napus])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 45/107 (42.06%), Postives = 60/107 (56.07%), Query Frame = 1


Query: 1   MESLFKAYSNSSDDYDEE--DEPKPKRLALSSSPSKRPELEPFK--FKPNIRPS--HCSH 60
           M+ L  +Y+N SDD  E   D     + A  S PSKRP  EP +  +KP  +P+  + S+
Sbjct: 1   MDLLRNSYANDSDDEPEPVTDNRLTSKTATPSLPSKRPYPEPEERQYKPIRKPNPPYSSY 60

Query: 61  SNPQPHER---IMVPGRYISKRERALLSSAPASRAPESFPNPSLQSP 99
           S+PQ       I  PGRY+SKRER+LL+S   S AP     PS+ SP
Sbjct: 61  SDPQTSSSTIPITFPGRYVSKRERSLLAS--LSTAPTQIQKPSVNSP 105

The following BLAST results are available for this feature:

BLAST of MELO3C016613 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H7_CUCSA	6.3e-43	86.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G088970 PE=4 SV=1	[more]
A0A151RPX5_CAJCA	2.3e-08	43.16	WD repeat-containing protein 25 OS=Cajanus cajan GN=KK1_033890 PE=4 SV=1	[more]
A0A078HZR8_BRANA	1.9e-07	42.06	BnaA03g11830D protein OS=Brassica napus GN=BnaA03g11830D PE=4 SV=1	[more]
A0A0D3B3H7_BRAOL	5.6e-07	40.74	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078I1Y1_BRANA	5.6e-07	40.74	BnaC03g14540D protein OS=Brassica napus GN=BnaC03g14540D PE=4 SV=1	[more]

BLAST of MELO3C016613 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54520.1	1.1e-06	36.89	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of MELO3C016613 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102838\|ref\|XP_008452340.1\|	2.6e-50	100.00	PREDICTED: WD repeat-containing protein 25 [Cucumis melo]	[more]
gi\|700201042\|gb\|KGN56175.1\|	9.1e-43	86.87	hypothetical protein Csa_3G088970 [Cucumis sativus]	[more]
gi\|778676184\|ref\|XP_011650540.1\|	9.1e-43	86.87	PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis sativus]	[more]
gi\|1012333206\|gb\|KYP44608.1\|	3.3e-08	43.16	WD repeat-containing protein 25 [Cajanus cajan]	[more]
gi\|674889667\|emb\|CDY43036.1\|	2.8e-07	42.06	BnaA03g11830D [Brassica napus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048573	photoperiodism, flowering
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016613T1	MELO3C016613T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016613	Csa3G088970	Cucumber (Chinese Long) v2	cumeB244
MELO3C016613	Cla97C10G190150	Watermelon (97103) v2	mewmbB431
MELO3C016613	Bhi11G000543	Wax gourd	mewgoB511
MELO3C016613	CSPI03G05530	Wild cucumber (PI 183967)	cpimeB242
MELO3C016613	Cucsa.074180	Cucumber (Gy14) v1	cgymeB076
MELO3C016613	CmaCh04G009280	Cucurbita maxima (Rimu)	cmameB689
MELO3C016613	CmoCh04G009980	Cucurbita moschata (Rifu)	cmomeB680
MELO3C016613	Cp4.1LG01g08340	Cucurbita pepo (Zucchini)	cpemeB409
MELO3C016613	CsGy3G005680	Cucumber (Gy14) v2	cgybmeB211
MELO3C016613	Carg00045	Silver-seed gourd	carmeB0670
MELO3C016613	CsaV3_3G005620	Cucumber (Chinese Long) v3	cucmeB248

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016613	Cucurbita pepo (Zucchini)	cpemeB014
MELO3C016613	Bottle gourd (USVL1VR-Ls)	lsimeB380
MELO3C016613	Silver-seed gourd	carmeB0790
MELO3C016613	Cucurbita maxima (Rimu)	cmameB292
MELO3C016613	Cucurbita moschata (Rifu)	cmomeB293
MELO3C016613	Watermelon (Charleston Gray)	mewcgB416
MELO3C016613	Watermelon (97103) v1	mewmB455