CsGy3G005680 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G005680
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	WD repeat-containing protein 25 isoform X1
Location	Chr3 : 4704407 .. 4705319 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATCAAATGCGAAAATAAAAAAAGGTAATTGATGACAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAATTTTTCCGTTAATTGAAAGCAATAGTTTTAGTTCAATCAATTGCCCCTTTTAATATTCTATGTAGAAGAATTTTATTGCTTCAAGTTGAATATCCTTACTCATGCTGGTTCATATTGTTAATTGCTAAACTATCTCGTCTCTTTGTGTACTTATAGTTTGGTTCCACTTGTTTCCAATGAACTTTAGTGATGAATTCGGGATTCTGGGAAAATTTTGTTAAGGAATTGATGCTGTTATTTAAGACTTAG

mRNA sequence

AACATCAAATGCGAAAATAAAAAAAGGTAATTGATGACAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGTGATGAATTCGGGATTCTGGGAAAATTTTGTTAAGGAATTGATGCTGTTATTTAAGACTTAG

Coding sequence (CDS)

ATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGTGATGAATTCGGGATTCTGGGAAAATTTTGTTAAGGAATTGATGCTGTTATTTAAGACTTAG

Protein sequence

MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETHERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPVMNSGFWENFVKELMLLFKT

Homology

[Close]

BLAST of CsGy3G005680 vs. NCBI nr
Match: XP_011650540.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 6.8e-34
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 101
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 100

[Close]

BLAST of CsGy3G005680 vs. NCBI nr
Match: KGN56175.1 (hypothetical protein Csa_3G088970 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of CsGy3G005680 vs. NCBI nr
Match: XP_016901209.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 8.0e-27
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSD XXXXXXXXXXXXXXXXXXX  PE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDXXXXXXXXXXXXXXXXXXXKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 101
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PPV
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPPV 100

[Close]

BLAST of CsGy3G005680 vs. NCBI nr
Match: XP_016901210.1 (PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 8.0e-27
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSD XXXXXXXXXXXXXXXXXXX  PE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDXXXXXXXXXXXXXXXXXXXKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 101
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PPV
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPPV 100

[Close]

BLAST of CsGy3G005680 vs. NCBI nr
Match: XP_022992622.1 (WD repeat-containing protein 25 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 48/96 (50.00%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
          ME LF+AYSN+SD                      PE    +F+P  R  HC DS SE  
Sbjct: 1  MEHLFEAYSNTSDEDNEEDEPQPKRLALPSSTSKRPEHS--QFQPMFRPSHCPDSTSEPQ 60

Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQ 97
          + IMVPGRY+SKRERAL+SS P SRAP+SF NPS Q
Sbjct: 61 KEIMVPGRYISKRERALMSSAPVSRAPESFLNPSVQ 94

[Close]

BLAST of CsGy3G005680 vs. TrEMBL
Match: tr|A0A0A0L2H7|A0A0A0L2H7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of CsGy3G005680 vs. TrEMBL
Match: tr|A0A1S4DZ03|A0A1S4DZ03_CUCME (WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSD XXXXXXXXXXXXXXXXXXX  PE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDXXXXXXXXXXXXXXXXXXXKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 101
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PPV
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPPV 100

[Close]

BLAST of CsGy3G005680 vs. TrEMBL
Match: tr|A0A1S4DZQ2|A0A1S4DZQ2_CUCME (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 84/100 (84.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDXXXXXXXXXXXXXXXXXXXXXXPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSD XXXXXXXXXXXXXXXXXXX  PE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDXXXXXXXXXXXXXXXXXXXKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPV 101
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PPV
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPPV 100

The following BLAST results are available for this feature:

BLAST of CsGy3G005680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650540.1	6.8e-34	100.00	PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis sativus]	[more]
KGN56175.1	2.0e-33	100.00	hypothetical protein Csa_3G088970 [Cucumis sativus]	[more]
XP_016901209.1	8.0e-27	84.00	PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo]	[more]
XP_016901210.1	8.0e-27	84.00	PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo]	[more]
XP_022992622.1	2.1e-14	50.00	WD repeat-containing protein 25 [Cucurbita maxima]	[more]

BLAST of CsGy3G005680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G005680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G005680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2H7\|A0A0A0L2H7_CUCSA	1.3e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1	[more]
tr\|A0A1S4DZ03\|A0A1S4DZ03_CUCME	5.3e-27	84.00	WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034933...	[more]
tr\|A0A1S4DZQ2\|A0A1S4DZQ2_CUCME	5.3e-27	84.00	WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034933...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G005680.1	CsGy3G005680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G005680	Cla003824	Watermelon (97103) v1	cgybwmB183
CsGy3G005680	Csa3G088970	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G005680	MELO3C016613	Melon (DHL92) v3.5.1	cgybmeB211
CsGy3G005680	ClCG10G006010	Watermelon (Charleston Gray)	cgybwcgB174
CsGy3G005680	CSPI03G05530	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G005680	CmaCh04G009280	Cucurbita maxima (Rimu)	cgybcmaB416
CsGy3G005680	CmoCh04G009980	Cucurbita moschata (Rifu)	cgybcmoB393
CsGy3G005680	Cp4.1LG01g08340	Cucurbita pepo (Zucchini)	cgybcpeB369
CsGy3G005680	MELO3C016614.2	Melon (DHL92) v3.6.1	cgybmedB203
CsGy3G005680	CsaV3_3G005620	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G005680	Cla97C10G190150	Watermelon (97103) v2	cgybwmbB174
CsGy3G005680	Bhi11G000543	Wax gourd	cgybwgoB209
CsGy3G005680	Carg00045	Silver-seed gourd	carcgybB0659

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G005680	Cucurbita maxima (Rimu)	cgybcmaB341
CsGy3G005680	Cucurbita moschata (Rifu)	cgybcmoB303
CsGy3G005680	Cucurbita pepo (Zucchini)	cgybcpeB280
CsGy3G005680	Bottle gourd (USVL1VR-Ls)	cgyblsiB183
CsGy3G005680	Silver-seed gourd	carcgybB0784
CsGy3G005680	Cucumber (Chinese Long) v3	cgybcucB104
CsGy3G005680	Watermelon (97103) v2	cgybwmbB192