MELO3C016402.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C016402.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiondehydrin DHN1
Locationchr07 : 24182063 .. 24183504 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGTATATATTATCCAACAATCTTCACTTCCAAAATCATACAATCAATACTCTCAAAAACTAATCACTCTTTAATCTGTATCCAGCTCTTTTTGTTGTGTTTTGCTTTGCAAAAAGATATGGCGCATTACCAATCTGGAGGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTAATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGTGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACATATGAGACGAGCGGATACGGTGGGGCAGGGTATGGAGGAGGACACCATCAGCAGCATAAGGAGCATGGGGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCGTAAGTGTAACCTAATCTCATCTTAATCCTTCACCCGTTAAGAAAATTTAAAAGAGAAATCTTCTTTTAAGATGAAAGAGAATTTAAAAAAGTTATTTTATAACAAAAAGTGATATATGGCAATCATCTCTCCGTTACTTCATCCAGCACAAAATAAAAAAATTTCGAAGTGAAAGGTCCTTGTGTCCTGTGTGTTGGTAGTCTTCCTCTCGTATTAGACTCTACGAGAGCGATGTTAGAATAGTATAATATTGAATTTATATCTTCCCCTAGTCGGTTCTTGATCTAAGCCTATTAAATATATAGCATTTAAATTCTTTCCTTATAATAATTTTGACACCGAATTTCGCAACTTCAGAATCCTGGCAAGTTGCTTCAAACAGCGACCTTAATGTTTACATCAATTATTGTTGTTTTTTCTAATTAAATCTGAGATGATTTTAATGGGATGATGTTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACGTCACCATCATGAGGGGCAAGCAGTGTCAACCACGACCCCGGGCGGTTATGCGTCGGCCGAGCATGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGAGAATGACTTGGAAAGTGTCCATGTTTGTATGCTGTTTATATTAATAAAATTACCGCTGTGATCTTAGAAGGGGTATCATGGATAGATCATATATATAGATCTATATAAAAAAAAACGAAGGCTGTTATGTCACAAATGATTAAGTAATTTAAGGACTAGCTTCGGTTGATGCGTGTTATGGTTGTTTGTATTATGTATAATTTCTGGGTTGTGTGGTTGAATCAACAATGTTTCTCAAATATGTTACAAATATTTACAGCATTTCTTTTTATATCTTTGTCACATCAGATCTTATCGCCTAGTGAAGCGACGAACTAATATGTTAATA

mRNA sequence

CTCTGTATATATTATCCAACAATCTTCACTTCCAAAATCATACAATCAATACTCTCAAAAACTAATCACTCTTTAATCTGTATCCAGCTCTTTTTGTTGTGTTTTGCTTTGCAAAAAGATATGGCGCATTACCAATCTGGAGGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTAATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGTGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACATATGAGACGAGCGGATACGGTGGGGCAGGGTATGGAGGAGGACACCATCAGCAGCATAAGGAGCATGGGGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACGTCACCATCATGAGGGGCAAGCAGTGTCAACCACGACCCCGGGCGGTTATGCGTCGGCCGAGCATGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGAGAATGACTTGGAAAGTGTCCATGTTTGTATGCTGTTTATATTAATAAAATTACCGCTGTGATCTTAGAAGGGGTATCATGGATAGATCATATATATAGATCTATATAAAAAAAAACGAAGGCTGTTATGTCACAAATGATTAAGTAATTTAAGGACTAGCTTCGGTTGATGCGTGTTATGGTTGTTTGTATTATGTATAATTTCTGGGTTGTGTGGTTGAATCAACAATGTTTCTCAAATATGTTACAAATATTTACAGCATTTCTTTTTATATCTTTGTCACATCAGATCTTATCGCCTAGTGAAGCGACGAACTAATATGTTAATA

Coding sequence (CDS)

ATGGCGCATTACCAATCTGGAGGAACCGATCAGTACGGCAACCCAATTCGCCAGACTGATGAATATGGCAACGTAATCTCCGAGACCGGTCAGTACGGTGACCCCCTTCGTCGGACCGGTGAGTTCCGTGAAACTGACCAGTATGGAAACCCTGTGCGTCGGACTGATGATGTGTTCGGTAACCCAGTTGGAACTGGGACGGGGATGGGGACCGGTGGGACATATGAGACGAGCGGATACGGTGGGGCAGGGTATGGAGGAGGACACCATCAGCAGCATAAGGAGCATGGGGGCATACTTCATCGCTCTGGAAGCTCCAGTTCTAGCTCCTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAGGAGAAGGTAAAGGAGAAGCTGCCAGGACGTCACCATCATGAGGGGCAAGCAGTGTCAACCACGACCCCGGGCGGTTATGCGTCGGCCGAGCATGGTGGGCAGCATGAGAAGAAGGGAATAATGGAGAAGATCAAGGAGAAGCTTCCGGGACATCACTGA

Protein sequence

MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFGNPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSSEDDGHGGRRKKGLKEKVKEKLPGRHHHEGQAVSTTTPGGYASAEHGGQHEKKGIMEKIKEKLPGHH
Homology
[Close]
BLAST of MELO3C016402.2 vs. NCBI nr
Match: XP_008452109.1 (PREDICTED: dehydrin DHN1 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60
          MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETSGYGG 83
          NPVGTGTGMGTGGTYETSGYGG
Sbjct: 61 NPVGTGTGMGTGGTYETSGYGG 82

[Close]
BLAST of MELO3C016402.2 vs. NCBI nr
Match: XP_011653150.1 (PREDICTED: dehydrin DHN1-like [Cucumis sativus] >KGN53289.1 hypothetical protein Csa_4G045040 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60
          MAHYQSG TDQYGNPIR XXXXXXXXXXXXXXXXXXXXXXXXR XXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETSGYGG 83
          NPVGTGTGMGTGGTYET+GYGG
Sbjct: 61 NPVGTGTGMGTGGTYETTGYGG 82

[Close]
BLAST of MELO3C016402.2 vs. TrEMBL
Match: tr|A0A1S3BTX2|A0A1S3BTX2_CUCME (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60
          MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETSGYGG 83
          NPVGTGTGMGTGGTYETSGYGG
Sbjct: 61 NPVGTGTGMGTGGTYETSGYGG 82

[Close]
BLAST of MELO3C016402.2 vs. TrEMBL
Match: tr|A0A0A0KWM9|A0A0A0KWM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MAHYQSGGTDQYGNPIRQXXXXXXXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXVFG 60
          MAHYQSG TDQYGNPIR XXXXXXXXXXXXXXXXXXXXXXXXR XXXXXXXXXXXXXVFG
Sbjct: 1  MAHYQSGRTDQYGNPIRXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXXXVFG 60

Query: 61 NPVGTGTGMGTGGTYETSGYGG 83
          NPVGTGTGMGTGGTYET+GYGG
Sbjct: 61 NPVGTGTGMGTGGTYETTGYGG 82

The following BLAST results are available for this feature:
BLAST of MELO3C016402.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452109.11.3e-12100.00PREDICTED: dehydrin DHN1 [Cucumis melo][more]
XP_011653150.16.0e-1095.12PREDICTED: dehydrin DHN1-like [Cucumis sativus] >KGN53289.1 hypothetical protein... [more]
BLAST of MELO3C016402.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C016402.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C016402.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BTX2|A0A1S3BTX2_CUCME8.5e-13100.00dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1[more]
tr|A0A0A0KWM9|A0A0A0KWM9_CUCSA3.9e-1095.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009415response to water
Vocabulary: INTERPRO
TermDefinition
IPR030513Dehydrin_CS
IPR000167Dehydrin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0009415 response to water
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016402.2.1MELO3C016402.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000167DehydrinPFAMPF00257Dehydrincoord: 9..177
e-value: 2.3E-40
score: 138.8
IPR000167DehydrinPANTHERPTHR33346FAMILY NOT NAMEDcoord: 1..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..177
IPR030513Dehydrin, conserved sitePROSITEPS00315DEHYDRIN_1coord: 107..122
IPR030513Dehydrin, conserved sitePROSITEPS00823DEHYDRIN_2coord: 168..175

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C016402.2Cp4.1LG01g06900Cucurbita pepo (Zucchini)cpemedB496
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016402.2Cucumber (Gy14) v2cgybmedB266
MELO3C016402.2Cucumber (Gy14) v2cgybmedB437
MELO3C016402.2Cucumber (Gy14) v1cgymedB141
MELO3C016402.2Cucurbita maxima (Rimu)cmamedB350
MELO3C016402.2Cucurbita maxima (Rimu)cmamedB692
MELO3C016402.2Cucurbita maxima (Rimu)cmamedB782
MELO3C016402.2Cucurbita moschata (Rifu)cmomedB336
MELO3C016402.2Cucurbita moschata (Rifu)cmomedB684
MELO3C016402.2Cucurbita pepo (Zucchini)cpemedB077
MELO3C016402.2Cucurbita pepo (Zucchini)cpemedB238
MELO3C016402.2Wild cucumber (PI 183967)cpimedB301
MELO3C016402.2Wild cucumber (PI 183967)cpimedB490
MELO3C016402.2Cucumber (Chinese Long) v2cumedB297
MELO3C016402.2Cucumber (Chinese Long) v2cumedB480
MELO3C016402.2Melon (DHL92) v3.6.1medmedB152
MELO3C016402.2Bottle gourd (USVL1VR-Ls)lsimedB155
MELO3C016402.2Bottle gourd (USVL1VR-Ls)lsimedB471
MELO3C016402.2Watermelon (Charleston Gray)medwcgB459
MELO3C016402.2Watermelon (Charleston Gray)medwcgB479
MELO3C016402.2Watermelon (97103) v1medwmB491
MELO3C016402.2Watermelon (97103) v1medwmB516
MELO3C016402.2Silver-seed gourdcarmedB0416
MELO3C016402.2Silver-seed gourdcarmedB0930
MELO3C016402.2Silver-seed gourdcarmedB1004
MELO3C016402.2Cucumber (Chinese Long) v3cucmedB307
MELO3C016402.2Cucumber (Chinese Long) v3cucmedB501
MELO3C016402.2Watermelon (97103) v2medwmbB448
MELO3C016402.2Watermelon (97103) v2medwmbB482
MELO3C016402.2Wax gourdmedwgoB573
MELO3C016402.2Cucurbita moschata (Rifu)cmomedB779