MELO3C016059.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016059.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	chr01 : 32924359 .. 32924787 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCATCAAAACCACAATTTTCATATCTCTTCTCGCCCTACTCTTCTTCTACGAATATCTATACCCACTTCCTCCCCCGGTTCGCGGCGCCCATTCCAATTCCGTTACCGGGGTGCTGCACCGGAAAATCCTTCAGACGGCGGCTCATAAGACTGCAGGTGACAATGTCGAGTCCTCTTCAGAACGGAAGATGAATAACGTTCATATGAAAATAGGTACAAGCGGCGGTGGTGGCGGTGGCCGCGGTGGTGGTGGTGGTGGTGGCCGCGGTGGCCGCGGTGGTGGCGGTGGCCGCGATAGATCGTCGAAGCGGACAAACCTGGGAGGAGGTGGAACTGGCCACCATAAATCGGCGGCGAACCGGAGCCTGGTCGCGTCTTTTGGCGTTGGATTTCTTCTCTTCATTTTGGGATTGTTCATGTGA

mRNA sequence

ATGGCTGCCATCAAAACCACAATTTTCATATCTCTTCTCGCCCTACTCTTCTTCTACGAATATCTATACCCACTTCCTCCCCCGGTTCGCGGCGCCCATTCCAATTCCGTTACCGGGGTGCTGCACCGGAAAATCCTTCAGACGGCGGCTCATAAGACTGCAGGTGACAATGTCGAGTCCTCTTCAGAACGGAAGATGAATAACGTTCATATGAAAATAGGTACAAGCGGCGGTGGTGGCGGTGGCCGCGGTGGTGGTGGTGGTGGTGGCCGCGGTGGCCGCGGTGGTGGCGGTGGCCGCGATAGATCGTCGAAGCGGACAAACCTGGGAGGAGGTGGAACTGGCCACCATAAATCGGCGGCGAACCGGAGCCTGGTCGCGTCTTTTGGCGTTGGATTTCTTCTCTTCATTTTGGGATTGTTCATGTGA

Coding sequence (CDS)

ATGGCTGCCATCAAAACCACAATTTTCATATCTCTTCTCGCCCTACTCTTCTTCTACGAATATCTATACCCACTTCCTCCCCCGGTTCGCGGCGCCCATTCCAATTCCGTTACCGGGGTGCTGCACCGGAAAATCCTTCAGACGGCGGCTCATAAGACTGCAGGTGACAATGTCGAGTCCTCTTCAGAACGGAAGATGAATAACGTTCATATGAAAATAGGTACAAGCGGCGGTGGTGGCGGTGGCCGCGGTGGTGGTGGTGGTGGTGGCCGCGGTGGCCGCGGTGGTGGCGGTGGCCGCGATAGATCGTCGAAGCGGACAAACCTGGGAGGAGGTGGAACTGGCCACCATAAATCGGCGGCGAACCGGAGCCTGGTCGCGTCTTTTGGCGTTGGATTTCTTCTCTTCATTTTGGGATTGTTCATGTGA

Protein sequence

MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVESSSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSAANRSLVASFGVGFLLFILGLFM

Homology

[Close]

BLAST of MELO3C016059.2 vs. NCBI nr
Match: XP_008451666.1 (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.9e-38
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
           MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XNRSLVASFGVGFLLFILGLFM 143
           XNRSLVASFGVGFLLFILGLFM
Sbjct: 121 XNRSLVASFGVGFLLFILGLFM 142

[Close]

BLAST of MELO3C016059.2 vs. NCBI nr
Match: XP_008451651.1 (PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 6.1e-05
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
          MAAI+  + I+LLALLFF E L           S+S+TG+ HR IL T AH+    +VES
Sbjct: 1  MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60

Query: 61 SSERKMNNVHMK 73
          S +RK N +H K
Sbjct: 61 SYQRKSNKLHTK 63

[Close]

BLAST of MELO3C016059.2 vs. NCBI nr
Match: KGN44886.1 (hypothetical protein Csa_7G394060 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05
Identity = 64/142 (45.07%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
           MAAIK+ I ISLLALLFF E L       RGA SNSVT +L R ILQTA H+ A      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGA-SNSVTAMLRRNILQTATHEIA------ 60

Query: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            SE KM NV +K G                                    XXXXXXXX  
Sbjct: 61  DSEGKM-NVRIKKG--------------------------GLGRFRPIGAXXXXXXXXSA 108

Query: 121 XNRSLVASFGVGFLLFILGLFM 143
            NRS V SFG+GFLLF  GL +
Sbjct: 121 ANRSRVDSFGLGFLLFFFGLVL 108

[Close]

BLAST of MELO3C016059.2 vs. TrEMBL
Match: tr|A0A1S3BRF6|A0A1S3BRF6_CUCME (protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
           MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XNRSLVASFGVGFLLFILGLFM 143
           XNRSLVASFGVGFLLFILGLFM
Sbjct: 121 XNRSLVASFGVGFLLFILGLFM 142

[Close]

BLAST of MELO3C016059.2 vs. TrEMBL
Match: tr|A0A1S3BT53|A0A1S3BT53_CUCME (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
          MAAI+  + I+LLALLFF E L           S+S+TG+ HR IL T AH+    +VES
Sbjct: 1  MAAIRPLVSIALLALLFFSESLLT---------SHSLTGIPHRNILHTVAHRIVNGSVES 60

Query: 61 SSERKMNNVHMK 73
          S +RK N +H K
Sbjct: 61 SYQRKSNKLHTK 63

[Close]

BLAST of MELO3C016059.2 vs. TrEMBL
Match: tr|A0A0A0KAQ7|A0A0A0KAQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 64/142 (45.07%), Postives = 70/142 (49.30%), Query Frame = 0


Query: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60
           MAAIK+ I ISLLALLFF E L       RGA SNSVT +L R ILQTA H+ A      
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGA-SNSVTAMLRRNILQTATHEIA------ 60

Query: 61  SSERKMNNVHMKIGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
            SE KM NV +K G                                    XXXXXXXX  
Sbjct: 61  DSEGKM-NVRIKKG--------------------------GLGRFRPIGAXXXXXXXXSA 108

Query: 121 XNRSLVASFGVGFLLFILGLFM 143
            NRS V SFG+GFLLF  GL +
Sbjct: 121 ANRSRVDSFGLGFLLFFFGLVL 108

The following BLAST results are available for this feature:

BLAST of MELO3C016059.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451666.1	1.9e-38	100.00	PREDICTED: protein no-on-transient A-like [Cucumis melo]	[more]
XP_008451651.1	6.1e-05	47.22	PREDICTED: E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo]	[more]
KGN44886.1	7.9e-05	45.07	hypothetical protein Csa_7G394060 [Cucumis sativus]	[more]

BLAST of MELO3C016059.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C016059.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C016059.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRF6\|A0A1S3BRF6_CUCME	1.2e-38	100.00	protein no-on-transient A-like OS=Cucumis melo OX=3656 GN=LOC103492900 PE=4 SV=1	[more]
tr\|A0A1S3BT53\|A0A1S3BT53_CUCME	4.0e-05	47.22	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo OX=3656 GN=LOC103492883 P...	[more]
tr\|A0A0A0KAQ7\|A0A0A0KAQ7_CUCSA	5.2e-05	45.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G394060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016059.2.1	MELO3C016059.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..119

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016059.2	Carg07202	Silver-seed gourd	carmedB0112

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016059.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C016059.2	Cucumber (Gy14) v1	cgymedB601
MELO3C016059.2	Wild cucumber (PI 183967)	cpimedB525
MELO3C016059.2	Cucumber (Chinese Long) v2	cumedB511
MELO3C016059.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C016059.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C016059.2	Watermelon (97103) v1	medwmB181
MELO3C016059.2	Silver-seed gourd	carmedB0859
MELO3C016059.2	Cucumber (Chinese Long) v3	cucmedB538
MELO3C016059.2	Watermelon (97103) v2	medwmbB194