MELO3C015992.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015992.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 32311183 .. 32313498 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGGTGTTGGAATTCTAGACGACACGAAAAAGGGTGTAAGTGCTCCAGCATCGGCACCAAGTATTGCTCCTACTAGTTTTGATAATAAAGACGATGAAGCTTCGTCATTTGATTTCGAATTTACTAAAAATATCAATGGTGGAGTTGGTGCTTCTAATGATAATCACAAAATTAATTTGAAGGGGAGTGGCACACTTGATGTTTCTCATGAAGTTGATGCTTCTAATGATGGTCACAAAATGAATTGGAAGAAGAGTGGCACAATTGATTTTTCTAATGACGATCACAAAATGAATTTGAATAGTGGTAGCACAATTGATGTTTCTCATGAAGTTGATGTTTCTAATGATGATCACAGAGTTAATTTGAAGAAGGATGACACAATTGATGTTTCTAATGAGGATGACAAAACTAATTTGAAGGGTGGCGACACAGTTGATGTTTCTCATGAAGTTGATGTTTCTAATGATGATCACAAAGTTAATTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTAATTTGAAGAGTGGTGGCACAGTTGATGTTTCTCATGAAGTTGATGTTTCTAATAATGATCACAAAGTTAATTTGCAGAAGGGCGGCACCATTGATGTTTCTAATGATGGTCACAAAACTAATTTGAAGAGTGGTGGTACAGTTGATGTTTCTCGTGAAGTTGGTGTTTCTAATGATGATAACAAAATTGATTTGAACAAGGGTGTCACAATTGATGCTTCTAATGCTCACAAAATTAATTTGAAGAGTGGTGGCACAATTGATGTTTCTGGTGATGGAATAACCAATGGAAAGATGAAAGGTGATGGAATATTCGGTGGAAAGATGGGAGGTAATGGAATATTCGGCGGAAAGATGGGAGGTGATGGAACAATCGGTGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGAACAATGGGCGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGCACATTTGATTTTTCTGGCAATGGAATAATGAGCGGAAAGCTGAGAGGTGGTGCCAGCATTGGTCTAGGGAGCACAGGGAGAATTGGTTAA

mRNA sequence

AGGAGGTGTTGGAATTCTAGACGACACGAAAAAGGGTGTAAGTGCTCCAGCATCGGCACCAAGTATTGCTCCTACTAGTTTTGATAATAAAGACGATGAAGCTTCGTCATTTGATTTCGAATTTACTAAAAATATCAATGGTGGAGTTGGTGCTTCTAATGATAATCACAAAATTAATTTGAAGGGGAGTGGCACACTTGATGTTTCTCATGAAGTTGATGCTTCTAATGATGGTCACAAAATGAATTGGAAGAAGAGTGGCACAATTGATTTTTCTAATGACGATCACAAAATGAATTTGAATAGTGGTAGCACAATTGATGTTTCTCATGAAGTTGATGTTTCTAATGATGATCACAGAGTTAATTTGAAGAAGGATGACACAATTGATGTTTCTAATGAGGATGACAAAACTAATTTGAAGGTTAATTTGCAGAAGGGCGGCACCATTGATGTTTCTAATGATGGTCACAAAACTAATTTGAAGAGTGGTGGTACAGTTGATGTTTCTCGTGAAGTTGGTGTTTCTAATGATGATAACAAAATTGATTTGAACAAGGGTGTCACAATTGATGCTTCTAATGCTCACAAAATTAATTTGAAGAGTGGTGGCACAATTGATGTTTCTGGTGATGGAATAACCAATGGAAAGATGAAAGGTGATGGAATATTCGGTGGAAAGATGGGAGGTAATGGAATATTCGGCGGAAAGATGGGAGGTGATGGAACAATCGGTGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGAACAATGGGCGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGCACATTTGATTTTTCTGGCAATGGAATAATGAGCGGAAAGCTGAGAGGTGGTGCCAGCATTGGTCTAGGGAGCACAGGGAGAATTGGTTAA

Coding sequence (CDS)

GGAGGTGTTGGAATTCTAGACGACACGAAAAAGGGTGTAAGTGCTCCAGCATCGGCACCAAGTATTGCTCCTACTAGTTTTGATAATAAAGACGATGAAGCTTCGTCATTTGATTTCGAATTTACTAAAAATATCAATGGTGGAGTTGGTGCTTCTAATGATAATCACAAAATTAATTTGAAGGGGAGTGGCACACTTGATGTTTCTCATGAAGTTGATGCTTCTAATGATGGTCACAAAATGAATTGGAAGAAGAGTGGCACAATTGATTTTTCTAATGACGATCACAAAATGAATTTGAATAGTGGTAGCACAATTGATGTTTCTCATGAAGTTGATGTTTCTAATGATGATCACAGAGTTAATTTGAAGAAGGATGACACAATTGATGTTTCTAATGAGGATGACAAAACTAATTTGAAGGTTAATTTGCAGAAGGGCGGCACCATTGATGTTTCTAATGATGGTCACAAAACTAATTTGAAGAGTGGTGGTACAGTTGATGTTTCTCGTGAAGTTGGTGTTTCTAATGATGATAACAAAATTGATTTGAACAAGGGTGTCACAATTGATGCTTCTAATGCTCACAAAATTAATTTGAAGAGTGGTGGCACAATTGATGTTTCTGGTGATGGAATAACCAATGGAAAGATGAAAGGTGATGGAATATTCGGTGGAAAGATGGGAGGTAATGGAATATTCGGCGGAAAGATGGGAGGTGATGGAACAATCGGTGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGAACAATGGGCGGAAAGATGGGAGGTGATGTAAAGATGGGAGGTGGTGGCACATTTGATTTTTCTGGCAATGGAATAATGAGCGGAAAGCTGAGAGGTGGTGCCAGCATTGGTCTAGGGAGCACAGGGAGAATTGGTTAA

Protein sequence

GGVGILDDTKKGVSAPASAPSIAPTSFDNKDDEASSFDFEFTKNINGGVGASNDNHKINLKGSGTLDVSHEVDASNDGHKMNWKKSGTIDFSNDDHKMNLNSGSTIDVSHEVDVSNDDHRVNLKKDDTIDVSNEDDKTNLKVNLQKGGTIDVSNDGHKTNLKSGGTVDVSREVGVSNDDNKIDLNKGVTIDASNAHKINLKSGGTIDVSGDGITNGKMKGDGIFGGKMGGNGIFGGKMGGDGTIGGKMGGDVKMGGGGTMGGKMGGDVKMGGGGTFDFSGNGIMSGKLRGGASIGLGSTGRIG

Homology

[Close]

BLAST of MELO3C015992.2 vs. NCBI nr
Match: KGN44950.1 (hypothetical protein Csa_7G398120 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   GGVGILDDTKKG---VSAPASAPSIAPTSFD----NKDDEASSFDFEFTKNINGGVGASN 60
           GG GI+  TK G    +AP  AP IAP  FD    N+D  ASSFDF+F+KNINGGV  SN
Sbjct: 46  GGAGIMGGTKNGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSN 105

Query: 61  DNHKINLKGSG 65
             HK+NLKGSG
Sbjct: 106 GAHKLNLKGSG 116

[Close]

BLAST of MELO3C015992.2 vs. NCBI nr
Match: XP_011659777.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   GGVGILDDTKKG---VSAPASAPSIAPTSFD----NKDDEASSFDFEFTKNINGGVGASN 60
           GG GI+  TK G    +AP  AP IAP  FD    N+D  ASSFDF+F+KNINGGV  SN
Sbjct: 46  GGAGIMGGTKNGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSN 105

Query: 61  DNHKINLKGSG 65
             HK+NLKGSG
Sbjct: 106 GAHKLNLKGSG 116

[Close]

BLAST of MELO3C015992.2 vs. TrEMBL
Match: tr|A0A0A0K5G8|A0A0A0K5G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-10
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1   GGVGILDDTKKG---VSAPASAPSIAPTSFD----NKDDEASSFDFEFTKNINGGVGASN 60
           GG GI+  TK G    +AP  AP IAP  FD    N+D  ASSFDF+F+KNINGGV  SN
Sbjct: 46  GGAGIMGGTKNGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSN 105

Query: 61  DNHKINLKGSG 65
             HK+NLKGSG
Sbjct: 106 GAHKLNLKGSG 116

The following BLAST results are available for this feature:

BLAST of MELO3C015992.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44950.1	1.0e-09	59.15	hypothetical protein Csa_7G398120 [Cucumis sativus]	[more]
XP_011659777.1	1.0e-09	59.15	PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis sativus]	[more]

BLAST of MELO3C015992.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015992.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015992.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K5G8\|A0A0A0K5G8_CUCSA	6.8e-10	59.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005882	intermediate filament
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005198	structural molecule activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015992.2.1	MELO3C015992.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015992.2	Csa7G398120	Cucumber (Chinese Long) v2	cumedB511
MELO3C015992.2	CSPI07G17570	Wild cucumber (PI 183967)	cpimedB525
MELO3C015992.2	CsaV3_7G029360	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015992.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C015992.2	Cucumber (Gy14) v1	cgymedB368
MELO3C015992.2	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015992.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015992.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015992.2	Cucurbita moschata (Rifu)	cmomedB920
MELO3C015992.2	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015992.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015992.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015992.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015992.2	Watermelon (Charleston Gray)	medwcgB178
MELO3C015992.2	Watermelon (97103) v1	medwmB181
MELO3C015992.2	Watermelon (97103) v1	medwmB206
MELO3C015992.2	Silver-seed gourd	carmedB0112
MELO3C015992.2	Silver-seed gourd	carmedB0572
MELO3C015992.2	Watermelon (97103) v2	medwmbB194
MELO3C015992.2	Watermelon (97103) v2	medwmbB218
MELO3C015992.2	Wax gourd	medwgoB255