MELO3C015984.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015984.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	chr01 : 32281401 .. 32283172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGATAGCCTTCTCATTCTTCCTCCAGCGGAGCTCCTCTGTGAAACCCATGGCCGCCACCGCTGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTTCTTCTTTCTTTCTCCTTGTTGATGCCAGTTCCCATTGAAATTGGGTTTTCTTTTAGTTTTTACTTTATCCTTGTAATTTAGGTATAGGATCATCTCCTTTGATTCCCAACTATGAAAACTCAAATTCTTTCTATTGCTTCCCCTGCTCTCGATTTTACTGTTACTGTTCCTTTCTTCTGACTGGAGGGTTCTGACCTGTTCAGTTGGATAAGGAATATTGAGACTTTGAAACTTTGTAGCAGTGAATTAGAATAAATATTGAGACTTGACTATTGTCACACCGTTTCTGGTCATCTCTACACAAGTTCTTGGTCCTAATGTGCATCCAAAATTTTATTGGATTTTTACTCTAAAGTAGTCTTGTAACATCTAACAAAGGTTAAATTGAGGTTAATATTGCAATTTCTGAAAGAATAGTGGTATGTTTGAAACTAAGTTCGAATTCAAAGAATATTTTTTATAATTTAGCCGTTTAAATTTTGTTCTGAGTTTTTGTCATTAGGACCATTGTTACTATATGATTAGGGCATAATGAGACAAAGGATGGAGTGATGAAATAGATTTTTAGATTGACTTTTTAAGTCTTTAAGAACAATTTTTAAACATCTAGAAAAGTTAATGGGAATAAGTCTTTAGTTTAAGATGTATTTTACTTCTTTCAGTCATTCTATCGAACATTTTGACCATATCACTGTCCTATTCTCCACTGTCGTGCGTAATCAGCATTTAACTATTGTTATACATTACAAAAGGTCAGTAGAATCACATATATTTAAAATTACTTTCAAATACTTAAAGTATCTAAAAAGTCATTCTAGACATGCACTTAGTCTGTGAATTGCATCCATTTGCAAAATGTTTAGATTTATTACCTTGTTTCCTTGGACAGAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTACAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCTTCCGTCACTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACCTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCAGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAAGTCAGCTAAATCTTGATGAGAATGCTTCAGAGAAACATTCTTTTGTTTTTTAGTTCTGTATATGCAACTGATCTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGGATGTGAGAACTTGAAATTCTTAATGAAAGAAAATTTTCCTCATCCTAGAGAGTGTAATCAGTTCAGCTTCAGATTGGTTTTGAGCTAAAACTGACTTGACCTTGTGTCGTTTTGAGAAGATTGAACGTTGTTTGAAAATTTGAT

mRNA sequence

AGGGATAGCCTTCTCATTCTTCCTCCAGCGGAGCTCCTCTGTGAAACCCATGGCCGCCACCGCTGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTTCTTCTTTCTTTCTCCTTGTTGATGCCAGTTCCCATTGAAATTGGGTTTTCTTTTAGTTTTTACTTTATCCTTGTAATTTAGGTATAGGATCATCTCCTTTGATTCCCAACTATGAAAACTCAAATTCTTTCTATTGCTTCCCCTGCTCTCGATTTTACTGTTACTGTTCCTTTCTTCTGACTGGAGGGTTCTGACCTGTTCAGTTGGATAAGGAATATTGAGACTTTGAAACTTTGTAGCAGTGAATTAGAATAAATATTGAGACTTGACTATTGTCACACCGTTTCTGGTCATCTCTACACAAGTTCTTGGTCCTAATGTGCATCCAAAATTTTATTGGATTTTTACTCTAAAGTAGTCTTGTAACATCTAACAAAGGTTAAATTGAGGTTAATATTGCAATTTCTGAAAGAATAGTGGTATGTTTGAAACTAAGTTCGAATTCAAAGAATATTTTTTATAATTTAGCCGTTTAAATTTTGTTCTGAGTTTTTGTCATTAGGACCATTGTTACTATATGATTAGGGCATAATGAGACAAAGGATGGAGTGATGAAATAGATTTTTAGATTGACTTTTTAAGTCTTTAAGAACAATTTTTAAACATCTAGAAAAGTTAATGGGAATAAGTCTTTAGTTTAAGATGTATTTTACTTCTTTCAGTCATTCTATCGAACATTTTGACCATATCACTGTCCTATTCTCCACTGTCGTGCGTAATCAGCATTTAACTATTGTTATACATTACAAAAGGTCAGTAGAATCACATATATTTAAAATTACTTTCAAATACTTAAAGTATCTAAAAAGTCATTCTAGACATGCACTTAGTCTGTGAATTGCATCCATTTGCAAAATGTTTAGATTTATTACCTTGTTTCCTTGGACAGAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTACAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCTTCCGTCACTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACCTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCAGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAAGTCAGCTAAATCTTGATGAGAATGCTTCAGAGAAACATTCTTTTGTTTTTTAGTTCTGTATATGCAACTGATCTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGGATGTGAGAACTTGAAATTCTTAATGAAAGAAAATTTTCCTCATCCTAGAGAGTGTAATCAGTTCAGCTTCAGATTGGTTTTGAGCTAAAACTGACTTGACCTTGTGTCGTTTTGAGAAGATTGAACGTTGTTTGAAAATTTGAT

Coding sequence (CDS)

ATGCACTTAGTCTGTGAATTGCATCCATTTGCAAAATGTTTAGATTTATTACCTTGTTTCCTTGGACAGAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTACAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGATTCTTCCGTCACTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTGCCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACCTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCAGTGGGGAAGTTTCCATATGTTATAGCTTATGCCCCCACTGAACCACTTCTAATTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGGCTGCTTGTCCTCCTTTCTCAACAAGTCAGCTAA

Protein sequence

MHLVCELHPFAKCLDLLPCFLGQRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

Homology

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BLAST of MELO3C015984.2 vs. NCBI nr
Match: XP_008451549.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucumis melo])

HSP 1 Score: 345.5 bits (885), Expect = 1.2e-91
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 82
           +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA
Sbjct: 14  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 73

Query: 83  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 142
           LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF
Sbjct: 74  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 133

Query: 143 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 134 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of MELO3C015984.2 vs. NCBI nr
Match: XP_004136017.2 (PREDICTED: uncharacterized protein LOC101206020 isoform X2 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 4.7e-88
Identity = 172/179 (96.09%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 82
           +RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF 
Sbjct: 13  RRGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFT 72

Query: 83  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 142
           LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF
Sbjct: 73  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 132

Query: 143 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           PYVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 133 PYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 191

[Close]

BLAST of MELO3C015984.2 vs. NCBI nr
Match: XP_004136016.2 (PREDICTED: uncharacterized protein LOC101206020 isoform X1 [Cucumis sativus] >KGN44957.1 hypothetical protein Csa_7G398190 [Cucumis sativus])

HSP 1 Score: 333.2 bits (853), Expect = 6.2e-88
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92

Query: 84  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143
           QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152

Query: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of MELO3C015984.2 vs. NCBI nr
Match: XP_022953720.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 154/179 (86.03%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 82
           +RGF YHPQ NPN +FQA KCSSSLLGSFTSSKI   L Y  PPLKP     AARTIPFA
Sbjct: 13  RRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKP-----AARTIPFA 72

Query: 83  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 142
           LQDAS+AASDF+N+++LADLDPGTAKLAI FLGP LS FSFLFIARIVMSWYPKLPVGKF
Sbjct: 73  LQDASVAASDFMNNVSLADLDPGTAKLAIGFLGPFLSAFSFLFIARIVMSWYPKLPVGKF 132

Query: 143 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 133 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 186

[Close]

BLAST of MELO3C015984.2 vs. NCBI nr
Match: XP_023548988.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 5.4e-76
Identity = 154/179 (86.03%), Postives = 159/179 (88.83%), Query Frame = 0


Query: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 82
           +RGF YHPQ NPN +FQA KCSSSLLGSFTSSKI   L Y  PPLKP     AARTIPFA
Sbjct: 13  RRGFNYHPQSNPNCRFQAFKCSSSLLGSFTSSKIHLPLVYATPPLKP-----AARTIPFA 72

Query: 83  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 142
           LQDASMAASDF+N++ LADLDPGTAKLAI  LGP LS FSFLFIARIVMSWYPKLPVGKF
Sbjct: 73  LQDASMAASDFMNNVALADLDPGTAKLAIGLLGPFLSAFSFLFIARIVMSWYPKLPVGKF 132

Query: 143 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 133 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 186

[Close]

BLAST of MELO3C015984.2 vs. TAIR10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F))

HSP 1 Score: 178.3 bits (451), Expect = 4.6e-45
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 74  EAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 133
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 134 YPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLL 193
           YPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 194 VLLSQQ 200
           VL+SQQ
Sbjct: 168 VLVSQQ 171

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BLAST of MELO3C015984.2 vs. TAIR10
Match: AT3G07430.1 (YGGT family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 40/156 (25.64%), Postives = 73/156 (46.79%), Query Frame = 0


Query: 44  SSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDA---SMAASDFVNSMTLA 103
           SS+L GS  S   L +LA  +  +       A +T    + D    S++ +  V   +L 
Sbjct: 77  SSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFASLR 136

Query: 104 DLDPGTAKLAISFLGPS----LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLI 163
           D  PG     ++ +       L ++S + + R+++SW+P +P  + P        +P L 
Sbjct: 137 DRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLN 196

Query: 164 ATRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG 192
             R +IPP+   +DV+P++ F ++  L  I+ G  G
Sbjct: 197 LFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

[Close]

BLAST of MELO3C015984.2 vs. TAIR10
Match: AT4G27990.1 (YGGT family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.2e-04
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 118 LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPL-GGVDVTPVVWF 177
           L ++S + + R+++SW+P +P  + P        +P L   R +IPP+   +DV+P++ F
Sbjct: 144 LDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 203

Query: 178 GLVSFLNEILLGPQG 192
            ++  L  IL   +G
Sbjct: 204 AVLGTLGSILNNSRG 218

[Close]

BLAST of MELO3C015984.2 vs. Swiss-Prot
Match: sp|Q8RWM7|CCB3_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.3e-44
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 74  EAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 133
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 134 YPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLL 193
           YPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPVVWFGLVSFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 194 VLLSQQ 200
           VL+SQQ
Sbjct: 168 VLVSQQ 171

[Close]

BLAST of MELO3C015984.2 vs. TrEMBL
Match: tr|A0A1S3BSI7|A0A1S3BSI7_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 8.0e-92
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 23  QRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 82
           +RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA
Sbjct: 14  RRGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFA 73

Query: 83  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 142
           LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF
Sbjct: 74  LQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKF 133

Query: 143 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Sbjct: 134 PYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

[Close]

BLAST of MELO3C015984.2 vs. TrEMBL
Match: tr|A0A0A0K9A7|A0A0A0K9A7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 4.1e-88
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92

Query: 84  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143
           QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152

Query: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

[Close]

BLAST of MELO3C015984.2 vs. TrEMBL
Match: tr|B9T162|B9T162_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0190480 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 0


Query: 31  QRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDASMAA 90
           +RNP+  +  ++  SS+  S  ++++LP+ A +    +P  ++E  + I   +   S A 
Sbjct: 37  RRNPSDDYHVLQ--SSIRCSAVNTELLPTYATISE--RPLNSFEDVQNINLNVVKTSEAT 96

Query: 91  SDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAP 150
           S F+ S  +ADLDP TAKLAI FLGP LS F FLFI RIVMSWYPKLPVGKFPYVIAYAP
Sbjct: 97  SKFIQSSVVADLDPATAKLAIGFLGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIAYAP 156

Query: 151 TEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 202
           TEP+L+ TRKVIPP+GGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQV+
Sbjct: 157 TEPILVPTRKVIPPVGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVN 203

[Close]

BLAST of MELO3C015984.2 vs. TrEMBL
Match: tr|I1NH75|I1NH75_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G172300 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 111/182 (60.99%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 27  KYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAA-------RTI 86
           KYH +RN N     ++C S        +++  S    I  L  AA    +        T+
Sbjct: 43  KYHTKRNVNGNSGVMQCCSCY------TEVGASAGITISSLVNAATTHISLNSDVDLNTL 102

Query: 87  PFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPV 146
             ++Q+ S A++D +  + LADLDP TAKLAI FLGP LSVF FLFI RIVMSWYPKLPV
Sbjct: 103 KLSIQETSPASTDLMTRLVLADLDPDTAKLAIGFLGPFLSVFGFLFILRIVMSWYPKLPV 162

Query: 147 GKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ 202
           GKFPYVIAYAPTEPLLI TRKVIPPL GVDVTPVVWFGL+SFLNEIL+GPQGLLVLLSQQ
Sbjct: 163 GKFPYVIAYAPTEPLLIPTRKVIPPLAGVDVTPVVWFGLISFLNEILVGPQGLLVLLSQQ 218

[Close]

BLAST of MELO3C015984.2 vs. TrEMBL
Match: tr|I1LDA6|I1LDA6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100793885 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 111/182 (60.99%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 27  KYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAA-------RTI 86
           KYH +RN N     ++C S        +++  S    I  L  AA  + +        T+
Sbjct: 44  KYHTKRNVNDNSGVMQCCSCY------TEVGASAGITISSLVDAATTQISLNSDVDLNTL 103

Query: 87  PFALQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPV 146
             ++ + S A+SDF+  + LADLDP TAKLAI FLGP LSVF FLFI RIVMSWYPKLPV
Sbjct: 104 KLSMPETSHASSDFMTRLVLADLDPATAKLAIGFLGPFLSVFGFLFIVRIVMSWYPKLPV 163

Query: 147 GKFPYVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ 202
           GKFPYVIAYAPTEPLLI TRKVI PL GVDVTPVVWFGL+SFLNEIL+GPQGLLVLLSQQ
Sbjct: 164 GKFPYVIAYAPTEPLLIPTRKVIAPLAGVDVTPVVWFGLISFLNEILVGPQGLLVLLSQQ 219

The following BLAST results are available for this feature:

BLAST of MELO3C015984.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451549.1	1.2e-91	99.44	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic ...	[more]
XP_004136017.2	4.7e-88	96.09	PREDICTED: uncharacterized protein LOC101206020 isoform X2 [Cucumis sativus]	[more]
XP_004136016.2	6.2e-88	96.63	PREDICTED: uncharacterized protein LOC101206020 isoform X1 [Cucumis sativus] >KG...	[more]
XP_022953720.1	2.4e-76	86.03	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita ...	[more]
XP_023548988.1	5.4e-76	86.03	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]

BLAST of MELO3C015984.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G36120.1	4.6e-45	73.81	cofactor assembly, complex C (B6F)	[more]
AT3G07430.1	1.4e-04	25.64	YGGT family protein	[more]
AT4G27990.1	5.2e-04	29.33	YGGT family protein	[more]

BLAST of MELO3C015984.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8RWM7\|CCB3_ARATH	8.3e-44	73.81	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of MELO3C015984.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSI7\|A0A1S3BSI7_CUCME	8.0e-92	99.44	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]
tr\|A0A0A0K9A7\|A0A0A0K9A7_CUCSA	4.1e-88	96.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
tr\|B9T162\|B9T162_RICCO	4.1e-48	62.57	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0190480 PE=4 SV=1	[more]
tr\|I1NH75\|I1NH75_SOYBN	1.6e-47	60.99	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G172300 PE=4 SV=1	[more]
tr\|I1LDA6\|I1LDA6_SOYBN	1.6e-47	60.99	Uncharacterized protein OS=Glycine max OX=3847 GN=100793885 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR003425	CCB3/YggT

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015984.2.1	MELO3C015984.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 118..186 e-value: 3.9E-14 score: 52.7
IPR003425	CCB3/YggT	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 33..201
None	No IPR available	PANTHER	PTHR33219:SF11	SUBFAMILY NOT NAMED	coord: 33..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015984.2	Csa7G398190	Cucumber (Chinese Long) v2	cumedB511
MELO3C015984.2	CSPI07G17630	Wild cucumber (PI 183967)	cpimedB525
MELO3C015984.2	Cucsa.205420	Cucumber (Gy14) v1	cgymedB368
MELO3C015984.2	CmaCh17G010740	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015984.2	CmoCh17G010460	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015984.2	Lsi02G024170	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015984.2	Cp4.1LG12g05770	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015984.2	CsGy7G016070	Cucumber (Gy14) v2	cgybmedB467
MELO3C015984.2	Cla015083	Watermelon (97103) v1	medwmB206
MELO3C015984.2	ClCG09G005720	Watermelon (Charleston Gray)	medwcgB178
MELO3C015984.2	Cla97C09G168230	Watermelon (97103) v2	medwmbB218
MELO3C015984.2	Bhi09G000735	Wax gourd	medwgoB255
MELO3C015984.2	Carg07162	Silver-seed gourd	carmedB0112
MELO3C015984.2	CsaV3_7G029440	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015984.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015984.2	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015984.2	Watermelon (Charleston Gray)	medwcgB155
MELO3C015984.2	Watermelon (97103) v1	medwmB181
MELO3C015984.2	Watermelon (97103) v2	medwmbB194