MELO3C015911.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015911.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor, putative
Location	chr01 : 31698812 .. 31699751 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTATTTCTCTAGTTTCTTAACCAAAAGTGAAAAAGAAGGAAAAAAAATACCACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCATAAAACAACACAAGATCGCATCATCATCATCAAAGAGATCAGGAACGACAGCTCAAATGATCAATCCATATGGAAGAAAAAATCAATGAAAGAAGAAGTAGGAGAAGAGGAAGATCAAGAAATTAATAGCAAAGGCAAAGACAAAAGTACTTGCAATAATATTAACACAAGAAGAACGACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCGAGAAGATCATCATCATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACATTTTGAGAAATCTTGTACCAAACAACGACAACCACCACGACGATGACGAAAGCTGTACTGCCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAAAAAAAAATTTTTTGTTTCATTTTATTTTTTATTTTTATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTTTTTTTTGTTGGTTCTTTTTCTCTTACTTTTGCTTTATTGATCATTTGTCTTTGAAATGTCTCTGTAGTTTTAGAGAGAGAAATTTAACTCTTTTTTCTTTGGGTGTGTGGAAAAGATTTGACTTTTGATTATAAGAAGTTATTTAGGGACATTGGGGT

mRNA sequence

ATCATTCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTATTTCTCTAGTTTCTTAACCAAAAGTGAAAAAGAAGGAAAAAAAATACCACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCATAAAACAACACAAGATCGCATCATCATCATCAAAGAGATCAGGAACGACAGCTCAAATGATCAATCCATATGGAAGAAAAAATCAATGAAAGAAGAAGTAGGAGAAGAGGAAGATCAAGAAATTAATAGCAAAGGCAAAGACAAAAGTACTTGCAATAATATTAACACAAGAAGAACGACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCGAGAAGATCATCATCATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACATTTTGAGAAATCTTGTACCAAACAACGACAACCACCACGACGATGACGAAAGCTGTACTGCCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAAAAAAAAATTTTTTGTTTCATTTTATTTTTTATTTTTATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTTTTTTTTGTTGGTTCTTTTTCTCTTACTTTTGCTTTATTGATCATTTGTCTTTGAAATGTCTCTGTAGTTTTAGAGAGAGAAATTTAACTCTTTTTTCTTTGGGTGTGTGGAAAAGATTTGACTTTTGATTATAAGAAGTTATTTAGGGACATTGGGGT

Coding sequence (CDS)

ATCATTCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTATTTCTCTAGTTTCTTAACCAAAAGTGAAAAAGAAGGAAAAAAAATACCACAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAAGATCATAAAACAACACAAGATCGCATCATCATCATCAAAGAGATCAGGAACGACAGCTCAAATGATCAATCCATATGGAAGAAAAAATCAATGAAAGAAGAAGTAGGAGAAGAGGAAGATCAAGAAATTAATAGCAAAGGCAAAGACAAAAGTACTTGCAATAATATTAACACAAGAAGAACGACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCGAGAAGATCATCATCATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACATTTTGAGAAATCTTGTACCAAACAACGACAACCACCACGACGATGACGAAAGCTGTACTGCCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGA

Protein sequence

IIQNLNPKPHFPLSLYFSSFLTKSEKEGKKIPQNQMGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEINSKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSSSSRIEQRVNILRNLVPNNDNHHDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE

Homology

[Close]

BLAST of MELO3C015911.2 vs. NCBI nr
Match: KGN45028.1 (hypothetical protein Csa_7G407810 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 134/173 (77.46%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 36  MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWXXXXXXXXXXXXXXXXXX 95
           MGVSQETLLQIQLNMEDH+TTQDRII IKEIRN      +  XXXXXXXXXXXXXXXXXX
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRN------NXXXXXXXXXXXXXXXXXXXX 60

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEQRVNTLRSLVPNN 120

Query: 156 XXXXXXXXXXXTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 209
                        GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

[Close]

BLAST of MELO3C015911.2 vs. TrEMBL
Match: tr|A0A0A0K6D9|A0A0A0K6D9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 134/173 (77.46%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 36  MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWXXXXXXXXXXXXXXXXXX 95
           MGVSQETLLQIQLNMEDH+TTQDRII IKEIRN      +  XXXXXXXXXXXXXXXXXX
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRN------NXXXXXXXXXXXXXXXXXXXX 60

Query: 96  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 155
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEQRVNTLRSLVPNN 120

Query: 156 XXXXXXXXXXXTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 209
                        GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

The following BLAST results are available for this feature:

BLAST of MELO3C015911.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45028.1	4.2e-15	77.46	hypothetical protein Csa_7G407810 [Cucumis sativus]	[more]

BLAST of MELO3C015911.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015911.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015911.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K6D9\|A0A0A0K6D9_CUCSA	2.8e-15	77.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015911.2.1	MELO3C015911.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..125
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 99..202
None	No IPR available	PANTHER	PTHR33124:SF13	TRANSCRIPTION FACTOR UPBEAT1	coord: 99..202

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015911.2	Csa7G407810	Cucumber (Chinese Long) v2	cumedB511
MELO3C015911.2	CSPI07G18270	Wild cucumber (PI 183967)	cpimedB525
MELO3C015911.2	Cucsa.204930	Cucumber (Gy14) v1	cgymedB368
MELO3C015911.2	CmaCh08G004790	Cucurbita maxima (Rimu)	cmamedB930
MELO3C015911.2	CmaCh17G010220	Cucurbita maxima (Rimu)	cmamedB373
MELO3C015911.2	CmoCh08G004700	Cucurbita moschata (Rifu)	cmomedB919
MELO3C015911.2	Cp4.1LG12g06190	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C015911.2	Cp4.1LG17g07590	Cucurbita pepo (Zucchini)	cpemedB341
MELO3C015911.2	Cla015153	Watermelon (97103) v1	medwmB181
MELO3C015911.2	ClCG09G004960	Watermelon (Charleston Gray)	medwcgB155
MELO3C015911.2	Cla97C09G167390	Watermelon (97103) v2	medwmbB194
MELO3C015911.2	Bhi09G000661	Wax gourd	medwgoB241
MELO3C015911.2	Carg13391	Silver-seed gourd	carmedB0459
MELO3C015911.2	CsaV3_7G030100	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015911.2	Watermelon (97103) v2	medwmbB161
MELO3C015911.2	Watermelon (97103) v2	medwmbB182
MELO3C015911.2	Wax gourd	medwgoB199
MELO3C015911.2	Wax gourd	medwgoB255
MELO3C015911.2	Cucumber (Gy14) v2	cgybmedB467
MELO3C015911.2	Cucurbita maxima (Rimu)	cmamedB251
MELO3C015911.2	Cucurbita maxima (Rimu)	cmamedB459
MELO3C015911.2	Cucurbita moschata (Rifu)	cmomedB234
MELO3C015911.2	Cucurbita moschata (Rifu)	cmomedB359
MELO3C015911.2	Cucurbita moschata (Rifu)	cmomedB446
MELO3C015911.2	Cucurbita pepo (Zucchini)	cpemedB350
MELO3C015911.2	Cucurbita pepo (Zucchini)	cpemedB598
MELO3C015911.2	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C015911.2	Bottle gourd (USVL1VR-Ls)	lsimedB266
MELO3C015911.2	Watermelon (Charleston Gray)	medwcgB185
MELO3C015911.2	Watermelon (97103) v1	medwmB213
MELO3C015911.2	Silver-seed gourd	carmedB0112
MELO3C015911.2	Silver-seed gourd	carmedB0767
MELO3C015911.2	Silver-seed gourd	carmedB0821