Cp4.1LG12g06190 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g06190
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 7682846 .. 7683238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

mRNA sequence

ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

Coding sequence (CDS)

ATGGGAGCTTTCCCAAACACCCTTTTGCTACTTCAACTCAACATGGAAGAACCAACACAAGATATCATCATCAATGGATCCATATTGAAGAAATCATCAATGGAAGAAGAACAAAAAAACAACAAAAGTTGCAGAAGAAGAAGTAGAACAAGCAAATCATTGGCCAAGAAGACAAGAAGATCATCAACTAGAATAGTGCAAAGGGTCACCACTTTGAGAAACCTCGTACCCAACATGGACAACAACAATGACAGCGACGACAACGATGGCTCGTTAGAACAGCTATTCACTCACACATCTGATTACATATCGTCGTTGCAAACACGAGTCAGATTCATGAGGACTTTGGTCGATGTCTTGTCCGGTTCTTCTTCTTCTTCTTCAAGAATTTGA

Protein sequence

MGAFPNTLLLLQLNMEEPTQDIIINGSILKKSSMEEEQKNNKSCRRRSRTSKSLAKKTRRSSTRIVQRVTTLRNLVPNMDNNNDSDDNDGSLEQLFTHTSDYISSLQTRVRFMRTLVDVLSGSSSSSSRI
Homology
[Close]
BLAST of Cp4.1LG12g06190 vs. TrEMBL
Match: A0A0A0K6D9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-17
Identity = 81/164 (49.39%), Postives = 99/164 (60.37%), Query Frame = 1 

Query: 1   MGAFPNTLLLLQLNMEE--PTQDIIIN-----------GSILKKSSMEEEQ--------K 60
           MG    TLL +QLNME+   TQD II+            S  KK+SM+EE+        K
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  NNKSC---------RRRSRTSKSLAKKTRR-----SSTRIVQRVTTLRNLVPNMDNNNDS 120
           ++KS          RRRSR++  + KK  R     SS+RI QRV TLR+LVPN DN+N  
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DDND---GSLEQLFTHTSDYISSLQTRVRFMRTLVDVLSGSSSS 127
           D ++   GSLEQLFT T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSS 164

[Close]
BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: gi|700189795|gb|KGN45028.1| (hypothetical protein Csa_7G407810 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 81/164 (49.39%), Postives = 99/164 (60.37%), Query Frame = 1 

Query: 1   MGAFPNTLLLLQLNMEE--PTQDIIIN-----------GSILKKSSMEEEQ--------K 60
           MG    TLL +QLNME+   TQD II+            S  KK+SM+EE+        K
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  NNKSC---------RRRSRTSKSLAKKTRR-----SSTRIVQRVTTLRNLVPNMDNNNDS 120
           ++KS          RRRSR++  + KK  R     SS+RI QRV TLR+LVPN DN+N  
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DDND---GSLEQLFTHTSDYISSLQTRVRFMRTLVDVLSGSSSS 127
           D ++   GSLEQLFT T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSS 164

[Close]
BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match: gi|659101175|ref|XP_008451466.1| (PREDICTED: uncharacterized protein LOC103492744 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 81/170 (47.65%), Postives = 97/170 (57.06%), Query Frame = 1 

Query: 1   MGAFPNTLLLLQLNMEE--PTQDIII-----------NGSILKKSSMEEEQ--------- 60
           MG    TLL +QLNME+   TQD II           + SI KK SM+EE          
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  ---KNNKSC---------RRRSRTSKSLAKKTRR--------SSTRIVQRVTTLRNLVPN 120
              K+  +C         RRRSR++  + KK  R        SS+RI QRV  LRNLVPN
Sbjct: 61  SKGKDKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSSSSRIEQRVNILRNLVPN 120

Query: 121 MDNNNDSDDN--DGSLEQLFTHTSDYISSLQTRVRFMRTLVDVLSGSSSS 127
            DN++D D++   GSLEQLFT T+DYI SLQTRVR M+TLVDVLS  SSS
Sbjct: 121 NDNHHDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSS 170

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g06190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6D9_CUCSA1.7e-1749.39Uncharacterized protein OS=Cucumis sativus GN=Csa_7G407810 PE=4 SV=1[more]
BLAST of Cp4.1LG12g06190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g06190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189795|gb|KGN45028.1|2.5e-1749.39hypothetical protein Csa_7G407810 [Cucumis sativus][more]
gi|659101175|ref|XP_008451466.1|1.2e-1647.65PREDICTED: uncharacterized protein LOC103492744 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g06190.1Cp4.1LG12g06190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 45..116
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 45..122
score: 4.3
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 28..123
score: 2.1
NoneNo IPR availablePANTHERPTHR33124:SF13TRANSCRIPTION FACTOR UPBEAT1coord: 28..123
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g06190Cucsa.204930Cucumber (Gy14) v1cgycpeB0579
Cp4.1LG12g06190CmaCh17G010220Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g06190CmaCh08G004790Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g06190Cla015153Watermelon (97103) v1cpewmB131
Cp4.1LG12g06190Csa7G407810Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g06190MELO3C015911Melon (DHL92) v3.5.1cpemeB118
Cp4.1LG12g06190ClCG09G004960Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g06190CSPI07G18270Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g06190MELO3C015911.2Melon (DHL92) v3.6.1cpemedB145
Cp4.1LG12g06190CsaV3_7G030100Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g06190Bhi09G000661Wax gourdcpewgoB0201
Cp4.1LG12g06190Carg13391Silver-seed gourdcarcpeB0631
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g06190Cp4.1LG17g07590Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g06190Cucurbita pepo (Zucchini)cpecpeB181
Cp4.1LG12g06190Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG12g06190Cucumber (Gy14) v1cgycpeB0185
Cp4.1LG12g06190Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g06190Cucurbita maxima (Rimu)cmacpeB465
Cp4.1LG12g06190Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g06190Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g06190Cucurbita moschata (Rifu)cmocpeB425
Cp4.1LG12g06190Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g06190Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g06190Bottle gourd (USVL1VR-Ls)cpelsiB116
Cp4.1LG12g06190Watermelon (Charleston Gray)cpewcgB134
Cp4.1LG12g06190Watermelon (97103) v1cpewmB139
Cp4.1LG12g06190Watermelon (97103) v1cpewmB141
Cp4.1LG12g06190Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g06190Silver-seed gourdcarcpeB0158
Cp4.1LG12g06190Silver-seed gourdcarcpeB1070
Cp4.1LG12g06190Silver-seed gourdcarcpeB1143
Cp4.1LG12g06190Wax gourdcpewgoB0171