MELO3C015891 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015891
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionU1 small nuclear ribonucleoprotein C
Locationchr1 : 30209920 .. 30213254 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACCTTCTCCTGCGAAAAGACTAGAAGCTTCTCTGTCTCTTCTTCCCATTCTCGCAGAGTCGCTGATAGGGTTTTTTTGTTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTTACACAGCTATGCCTCGGTTCGTTCTTTCATATCCTTTCTCTTCCAGCCCTGATTACTTTATTATTCAATCAAATTTAAACATCTCTCCGTTTCTCTCTCCATAGTTAGTGATGTGATCTTGTTGTGAATATGCAGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTGTAAGTCATCCTCTTTTTATGTTCAGATGATAATGCTATTTCCATTTCGTTTGACCATTGCCCACCTTGCTCGCCAATTTTTTTTTTTTCTGTTTATTTTCGTTTTGGGATTTTATTCGTTGATGCTGTAGTTCCTCGATAGGTAATGTTTTTGGGTTGATGATTCTTGGTTTTGGATGCACATATCAGTTGTTCGAAGAAATTGTAGGAAATTTGGATTCATATGACCGTGGTTGCTGTTGGGATTGGATCGAATGATGAATCAAATAGACTGTTCGTTGTTTTTTTCTTCTCATATATATATTATGATGTTTACATAAATGTGTTTTAAGAGAAGCTAGAACTTATGTTAGTAATTGAAAAGGTACAATGTTAATGATGAGAAGACTTCCCATTAAGACTTAAATCTAAAGAAACAAGTAATTGTGAAAAGGTTTGGAGAGAGCACTCCAAGAAGCTAACTTTTGAGCGTTTGATATATTTTAGACCAAACAACTTGGAAGCCCACAAAACCACCGTTGGTTGGCCTAGTGAATTGAGGTTGAGGTCAAGGAAGAAAGTGAGTGTAGAGGCTATTGGTTCAAACTATTGACTACATACATAAGATTTAAAATTCTATGACTTTCCTTCGTAACTAGATGTTGTAGGGTGACGTGGTTGTGGCTTCATGTTAGTTGAGGTGTGTGCAAAATCGTACTCAACACTTGATATCCAAAAAAAGAGAAGAAACACTAAACCATGGTTACTATGTATAGTTCTTGATTTCAAGCGGGATGTGTCAAACCTTTGGTTTCCTTGAAACTAACATTAGTCTGTACAATCTTTAATGACTTTTTTCAGTTATACTTGATTCTTGTGTTCTAGATGCGATAATATTTAGCTCCTTGGCATATTTTGGGCTCCCCCCCACCCCCTTTAAAAAATGTTGTTGGATAGAGTATTGCTCTGGAGGCAGGCTTCAGAATTTTGTCATTTATATTGAGTCATTGGTTGTTTAGAATTGCTTATATTTAGTTTATCTTTGATGTCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTTCCCACGTCTCGGTTTAGCGTATAATTCCCTATTCCGTGGAGGTTGAGCTCATCGAGCCAGTTTAGAACTTAATATCGTAGTTTTATGTTTAGAACTTAATATCGTAGTTTTATGTTTTAAAGAGTTTCAGATTAAAAAGAACCTGATTGTGGTTTTGTTGGTTATAATTTTAGAAACACTTATAAAGGGGAAAAGTTAACTGTTAGAGGTAAGATTTTATTGTTTATAGAGGTTCTGTTAAGGTTAGTGAATTGTAATTGTAACTTTCATATTTTTAAATAAAAGGACATAATTTAGAGAACTGAGGTAATATTAAAAATATCTTTTCACCCATTCATCCAATAAGAACTTTATTTTTTTTTTTTTTTTCAAGGAAAAAGACATTTTAGTTTCTAAAAGAACAAATGATCAACGAATTCTTAGTTTTTCTATTCATGGATGCACTCCAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGTAATATTCACAGATTTGATATTGTTGGAGATTTAACAATTTCTTTTAATGCATATCCCTTTGACTTTGTTGATGTCATTTCGCAATTTGCATTTTGAACTACAATAACCACATTGTTATGTTTTTCGACTCAGTTTTTAAAAAAAAAAATTTTCCTTAAAAACTTGAAACTTAAAATAGTCAAAGTAATAATATATCAGCTTGAATAGTGGAGATACTAGATATAATAATTACTGCCAAAGTAGAATCTGGCACCTATCTGTCTAGTTAAAATTATTTGTATTGTTGCTAGAATGATGTTTAGTCCTTTTTTTCAACAAACAAAAGACCAAACTTATTTGGAACGTAAAATGGAAGATGATTAGAGCGATGCAGATTTTCCCAGTCACATTCTGATGAAGTTTCTCTTTTCCTTGCTGGAAAAAAGGAATTATCATTTGAATAGAGGAAATCAGTTTAACCTCGTTGCTACTACTATCTCTTGAAGCTCAACTAGTATACTTCAGACTGACTCATGTCAGTTAGAACTGACATTTTTGTTGATTTCGGCCCGTGCTTCTTTTCATTACTGAATGTCAGTATTTCACCTATGTATCTAGATGTCTGAATTCCTCTTCTTTGTCATTGTAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAGAGCTTCTACTTGTGCTGTTTATGTATGATATCCAAAGCTCTTTTAATGCAAATTGGGACCAACATTTTTTAAAAATCTGAAGCAAAATTTGGAGCCTTTGAGATTAAATGTAGAAAAGTTCTTTCTAAGTGAGCAAAGGAAATAATTTTTGTGGTTGATTCCTTGCTACTTGTTTGGAGGTAGAATACGTAGTGTGCTTATATGGCCAAATGGGTGATTCTGAATCCGTTAAGACACAACGGTTTAGTTTTTAGTTTTCTTTTTGTAATTTCTAGTTTTCGGGAATGGAATGTATTTGATGTTTATTTGCTCCCCTTTAATGTCTGATTTTCTTTTAAAAATTGTTGCTGATTATGGAAACAGTAGGCTGA

mRNA sequence

GATACCTTCTCCTGCGAAAAGACTAGAAGCTTCTCTGTCTCTTCTTCCCATTCTCGCAGAGTCGCTGATAGGGTTTTTTTGTTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTTACACAGCTATGCCTCGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAGAGCTTCTACTTGTGCTGTTTATGTATGATATCCAAAGCTCTTTTAATGCAAATTGGGACCAACATTTTTTAAAAATCTGAAGCAAAATTTGGAGCCTTTGAGATTAAATGTAGAAAAGTTCTTTCTAAGTGAGCAAAGGAAATAATTTTTGTGGTTGATTCCTTGCTACTTGTTTGGAGGTAGAATACGTAGTGTGCTTATATGGCCAAATGGGTGATTCTGAATCCGTTAAGACACAACGGTTTAGTTTTTAGTTTTCTTTTTGTAATTTCTAGTTTTCGGGAATGGAATGTATTTGATGTTTATTTGCTCCCCTTTAATGTCTGATTTTCTTTTAAAAATTGTTGCTGATTATGGAAACAGTAGGCTGA

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTCGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATACCAGGAGCTGCTCCGGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTATCTACCAACTCCCACAATGCCACCTATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCGCCTCCTCCAGCGCCAATTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGCGCACCATTGGCTGCACCATCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH*
Homology
[Close]
BLAST of MELO3C015891 vs. Swiss-Prot
Match: RU1C_VITVI (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.4e-74
Identity = 147/216 (68.06%), Postives = 161/216 (74.54%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIP--GAAP-----GLMPGIRPPVLPR 120
            AAFQQVGAA+NQHL+       RPRLPVLPTP +P  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PIPGAPGYLPTPTMPPMMAPPGA---PIPGQVNIPSRPP----PPAPIPGSAPQPSSTNG 180
           P+PGAPGY+P P MP MMAPPGA   P+P   ++P RPP    PPA +PGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH 198
             +     YQANPA P SGG+DSF   AQ   E+NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQ-GPEANH 213

[Close]
BLAST of MELO3C015891 vs. Swiss-Prot
Match: RU1C_ARATH (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 128/210 (60.95%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAPGSGGYDS-FTSMAQPSSES 196
           P  Y  NPAAP SG +++   +   PS+ES
Sbjct: 181 PPPYHTNPAAPPSGNFNNPNLNNPNPSAES 202

[Close]
BLAST of MELO3C015891 vs. Swiss-Prot
Match: RU1C2_SORBI (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 136/230 (59.13%), Postives = 149/230 (64.78%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIPGAAP--GLMPGIRPPVLPRP---- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP +P   P   LMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 IPGAPGYLPTPTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPIPGSAPQPSS-TN 180
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GAPL----AAPSTYQANPAAPG---SGGYDSFTSMAQPS------SESNH 198
           GAP+    A P+ YQANP AP    SG   +  +  QP+      SE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of MELO3C015891 vs. Swiss-Prot
Match: RU1C1_SORBI (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 139/233 (59.66%), Postives = 151/233 (64.81%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVIPGA---APG--LMPGIRPPVLPRP- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP +P     APG  LMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

Query: 121 IPGAPGYLPT---PTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPIPGSAPQPSS 180
           IPG PG  PT   P  PP  M  PGAP PG +  P  PP        P P P + P P+S
Sbjct: 121 IPGYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 180

Query: 181 -TNGAPL----AAPSTYQANPAAPG---SGGYDSFTSMAQPS------SESNH 198
              GAP+    A P+ YQ NP AP    SG   +  +  QP+      SE NH
Sbjct: 181 GVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of MELO3C015891 vs. Swiss-Prot
Match: RU1C_CHICK (U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-26
Identity = 70/163 (42.94%), Postives = 84/163 (51.53%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLP----------VLPTPVIPG-AAPGLMPGIR---PPVL 120
            AAFQQ          G+ P  P          + P P IPG   PG+MP      PP++
Sbjct: 61  TAAFQQ----------GKIPPTPFSAPPPGGAMIPPPPSIPGPPRPGMMPAPHMGGPPMM 120

Query: 121 PRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPI 150
           P   P  PG +P    P M  P G  +P     P   PP  P+
Sbjct: 121 PMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPSRPM 146

[Close]
BLAST of MELO3C015891 vs. TrEMBL
Match: A0A0A0K515_CUCSA (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.5e-113
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 198
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of MELO3C015891 vs. TrEMBL
Match: A0A061FQX2_THECC (U1 small nuclear ribonucleoprotein C OS=Theobroma cacao GN=TCM_043735 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.8e-83
Identity = 156/209 (74.64%), Postives = 176/209 (84.21%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPV--IPGAAP-----GLMPGIRPPVLPRPIPGA 120
           AAAFQQVGAAFNQHL+ QRPRLPVLPTPV  IPGAAP      ++PGIRPPVLPRP+PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PGYLPTPTMPPMMAPPGAP-IPGQVNIPSRPPPPAP---IPGSAPQPSSTNGAP-LAAPS 180
           PGY+P P MPPM+APPGAP +PGQ+N   RPP  AP   +PG+A  P+S+N AP +  P+
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180

Query: 181 TYQANPAAPGSGGYDSFTSMAQPSSESNH 198
           +YQ NPAAP  GG+D+F + AQP SE+NH
Sbjct: 181 SYQTNPAAPTGGGFDNFNANAQP-SEANH 208

[Close]
BLAST of MELO3C015891 vs. TrEMBL
Match: A0A0B0NAP9_GOSAR (U1 small nuclear ribonucleoprotein C OS=Gossypium arboreum GN=F383_01127 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.7e-80
Identity = 147/196 (75.00%), Postives = 164/196 (83.67%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIP-GAAPGLMPGIRPPVLPRPIPGAPGYLPT 120
           AAAFQQVGAAFNQHL+ QRPRLPV+  P  P      ++PG+RPPVLPRPIPGAPGY+P 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVMSIPGAPLPVNQPMVPGMRPPVLPRPIPGAPGYIPV 120

Query: 121 PTMPPMMAPPGAPIPGQVNIPSRPP---PPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA 180
           P MPPMMAPPGAP+PGQVN   RPP   PP  + G+A  P+S+NGAP  + + YQANP A
Sbjct: 121 PGMPPMMAPPGAPLPGQVNGLPRPPTLAPPTTVSGTATTPTSSNGAPTTS-APYQANPTA 180

Query: 181 PGSGGYDSFTSMAQPS 193
           P SGG+D+F + AQPS
Sbjct: 181 PTSGGFDNFNANAQPS 195

[Close]
BLAST of MELO3C015891 vs. TrEMBL
Match: A0A0D2QZJ8_GOSRA (U1 small nuclear ribonucleoprotein C OS=Gossypium raimondii GN=B456_004G053600 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.3e-80
Identity = 148/197 (75.13%), Postives = 165/197 (83.76%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIP-GAAPGLMPGIRPPVLPRPIPGAPGYLPT 120
           AAAFQQVGAAFNQHL+ QRPRLPV+  P  P      ++PG+RPPVLPRPIPGAPGY+P 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVMSIPGAPLPVNQPMVPGMRPPVLPRPIPGAPGYIPV 120

Query: 121 PTMPPMMAPPGAPIPGQVNIPSRPP---PPAPIPGSAPQPSSTNGAP-LAAPSTYQANPA 180
           P MPPMMAPPGAP+PGQVN   RPP   PP  + G+   P+S+NGAP ++AP  YQANP 
Sbjct: 121 PGMPPMMAPPGAPLPGQVNGLPRPPTLAPPTTVSGTVTTPTSSNGAPTISAP--YQANPT 180

Query: 181 APGSGGYDSFTSMAQPS 193
           AP SGG+D+F + AQPS
Sbjct: 181 APTSGGFDNFNANAQPS 195

[Close]
BLAST of MELO3C015891 vs. TrEMBL
Match: A0A067KTD1_JATCU (U1 small nuclear ribonucleoprotein C OS=Jatropha curcas GN=JCGZ_03689 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 150/209 (71.77%), Postives = 166/209 (79.43%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPG-------LMPGIRPPVLPRPIPGA 120
            AAFQQVGAA+NQHLL QRPRLPVLPTPV+P A  G       L+PGIRPPVLPRP+PGA
Sbjct: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPIAGNGQLPMNTALLPGIRPPVLPRPVPGA 120

Query: 121 PGYLPTPTMPPMMAPPGAP-IPGQVNIPSRPP---PPAPIPGSAPQPSSTNGAP-LAAPS 180
           PGY+P   M P+MAPPGAP IPGQ N   RPP   PP  +PGS   P+ ++G P +  P 
Sbjct: 121 PGYMPGQVMQPIMAPPGAPSIPGQANGMPRPPMMMPPTSVPGSTAVPAPSSGTPSIVPPP 180

Query: 181 TYQANPAAPGSGGYDSFTSMAQPSSESNH 198
            YQ NPA P SGG+DSF +   P+SE+NH
Sbjct: 181 NYQPNPAVPTSGGFDSFNN--APASETNH 207

[Close]
BLAST of MELO3C015891 vs. TAIR10
Match: AT4G03120.1 (AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-62
Identity = 128/210 (60.95%), Postives = 140/210 (66.67%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPIPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  APIPG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAPGSGGYDS-FTSMAQPSSES 196
           P  Y  NPAAP SG +++   +   PS+ES
Sbjct: 181 PPPYHTNPAAPPSGNFNNPNLNNPNPSAES 202

[Close]
BLAST of MELO3C015891 vs. TAIR10
Match: AT3G19430.1 (AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related)

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-07
Identity = 32/95 (33.68%), Postives = 37/95 (38.95%), Query Frame = 1 

Query: 83  PVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR 142
           P  PTP +P   P + P   PP  P P P  P   P  + PP    P  P P    +P+ 
Sbjct: 119 PPTPTPSVPSPTPPVSP---PP--PTPTPSVPSPTPPVSPPPPTPTPSVPSPTPP-VPTD 178

Query: 143 PPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAP 178
           P P  P P S P P+ T   P  +P      P  P
Sbjct: 179 PMPSPPPPVSPPPPTPTPSVP--SPPDVTPTPPTP 205

[Close]
BLAST of MELO3C015891 vs. TAIR10
Match: AT5G38560.1 (AT5G38560.1 Protein kinase superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-06
Identity = 35/118 (29.66%), Postives = 45/118 (38.14%), Query Frame = 1 

Query: 83  PVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR 142
           P+   P  P A P + P   PP  P P+  +    P  + PP   P  +P P    I S 
Sbjct: 24  PLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPP---PSSSPPPSPPVITSP 83

Query: 143 PP-----PPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSES 196
           PP     PP P+  ++P PS+    P A P T    P    S    + T+   P   S
Sbjct: 84  PPTVASSPPPPVVIASPPPSTPATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPS 138


HSP 2 Score: 38.9 bits (89), Expect = 4.3e-03
Identity = 30/99 (30.30%), Postives = 42/99 (42.42%), Query Frame = 1 

Query: 84  VLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAP--IPGQVNIPS 143
           V P P++   +        PP+  +P         TP+ PP + PP +P   P  V + S
Sbjct: 4   VPPLPILSPPSSNSSTTAPPPLQTQPT--------TPSAPPPVTPPPSPPQSPPPV-VSS 63

Query: 144 RPPPP---APIPGSAPQPSSTNGAPLAAPSTYQANPAAP 178
            PPPP   +P P S+P PS       + P T  ++P  P
Sbjct: 64  SPPPPVVSSPPPSSSPPPSPP--VITSPPPTVASSPPPP 91

[Close]
BLAST of MELO3C015891 vs. TAIR10
Match: AT3G22120.1 (AT3G22120.1 cell wall-plasma membrane linker protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 29/95 (30.53%), Postives = 35/95 (36.84%), Query Frame = 1 

Query: 83  PVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSR 142
           P  PT       P + P  +PP +  P P  P        PP++ PP  P P     P++
Sbjct: 74  PKPPTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKPPTK 133

Query: 143 PPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAP 178
           PPP  P P +   P ST   P   P      P  P
Sbjct: 134 PPPSTPKPPTTKPPPSTPKPPHHKPPPTPCPPPTP 168

[Close]
BLAST of MELO3C015891 vs. TAIR10
Match: AT1G12040.1 (AT1G12040.1 leucine-rich repeat/extensin 1)

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 37/115 (32.17%), Postives = 41/115 (35.65%), Query Frame = 1 

Query: 80  PRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTM----------PPMMAPP 139
           P  PV   PV P   P   P   PPV P P P +P Y P+ T            P  +PP
Sbjct: 629 PPSPVYYPPVTPSPPPP-SPVYYPPVTPSPPPPSPVYYPSETQSPPPPTEYYYSPSQSPP 688

Query: 140 GAPI-----PGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGS 180
                    P Q      PPP      S P PS T+  P     +Y A+P  P S
Sbjct: 689 PTKACKEGHPPQATPSYEPPPEYSYSSSPPPPSPTSYFPPMPSVSYDASPPPPPS 742

[Close]
BLAST of MELO3C015891 vs. NCBI nr
Match: gi|659101099|ref|XP_008451425.1| (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo])

HSP 1 Score: 418.7 bits (1075), Expect = 5.7e-114
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 198
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of MELO3C015891 vs. NCBI nr
Match: gi|449462314|ref|XP_004148886.1| (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 2.2e-113
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 198
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of MELO3C015891 vs. NCBI nr
Match: gi|590566505|ref|XP_007010252.1| (C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 316.2 bits (809), Expect = 4.0e-83
Identity = 156/209 (74.64%), Postives = 176/209 (84.21%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPV--IPGAAP-----GLMPGIRPPVLPRPIPGA 120
           AAAFQQVGAAFNQHL+ QRPRLPVLPTPV  IPGAAP      ++PGIRPPVLPRP+PG 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVLPTPVMPIPGAAPLPMNQPMVPGIRPPVLPRPLPGP 120

Query: 121 PGYLPTPTMPPMMAPPGAP-IPGQVNIPSRPPPPAP---IPGSAPQPSSTNGAP-LAAPS 180
           PGY+P P MPPM+APPGAP +PGQ+N   RPP  AP   +PG+A  P+S+N AP +  P+
Sbjct: 121 PGYVPAPGMPPMVAPPGAPSLPGQINGVPRPPTLAPLTTVPGTATTPTSSNAAPTMVTPA 180

Query: 181 TYQANPAAPGSGGYDSFTSMAQPSSESNH 198
           +YQ NPAAP  GG+D+F + AQP SE+NH
Sbjct: 181 SYQTNPAAPTGGGFDNFNANAQP-SEANH 208

[Close]
BLAST of MELO3C015891 vs. NCBI nr
Match: gi|728830437|gb|KHG09880.1| (U1 small nuclear ribonucleoprotein C [Gossypium arboreum])

HSP 1 Score: 305.8 bits (782), Expect = 5.4e-80
Identity = 147/196 (75.00%), Postives = 164/196 (83.67%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIP-GAAPGLMPGIRPPVLPRPIPGAPGYLPT 120
           AAAFQQVGAAFNQHL+ QRPRLPV+  P  P      ++PG+RPPVLPRPIPGAPGY+P 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVMSIPGAPLPVNQPMVPGMRPPVLPRPIPGAPGYIPV 120

Query: 121 PTMPPMMAPPGAPIPGQVNIPSRPP---PPAPIPGSAPQPSSTNGAPLAAPSTYQANPAA 180
           P MPPMMAPPGAP+PGQVN   RPP   PP  + G+A  P+S+NGAP  + + YQANP A
Sbjct: 121 PGMPPMMAPPGAPLPGQVNGLPRPPTLAPPTTVSGTATTPTSSNGAPTTS-APYQANPTA 180

Query: 181 PGSGGYDSFTSMAQPS 193
           P SGG+D+F + AQPS
Sbjct: 181 PTSGGFDNFNANAQPS 195

[Close]
BLAST of MELO3C015891 vs. NCBI nr
Match: gi|823147194|ref|XP_012473506.1| (PREDICTED: U1 small nuclear ribonucleoprotein C [Gossypium raimondii])

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-79
Identity = 148/197 (75.13%), Postives = 165/197 (83.76%), Query Frame = 1 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIP-GAAPGLMPGIRPPVLPRPIPGAPGYLPT 120
           AAAFQQVGAAFNQHL+ QRPRLPV+  P  P      ++PG+RPPVLPRPIPGAPGY+P 
Sbjct: 61  AAAFQQVGAAFNQHLMAQRPRLPVMSIPGAPLPVNQPMVPGMRPPVLPRPIPGAPGYIPV 120

Query: 121 PTMPPMMAPPGAPIPGQVNIPSRPP---PPAPIPGSAPQPSSTNGAP-LAAPSTYQANPA 180
           P MPPMMAPPGAP+PGQVN   RPP   PP  + G+   P+S+NGAP ++AP  YQANP 
Sbjct: 121 PGMPPMMAPPGAPLPGQVNGLPRPPTLAPPTTVSGTVTTPTSSNGAPTISAP--YQANPT 180

Query: 181 APGSGGYDSFTSMAQPS 193
           AP SGG+D+F + AQPS
Sbjct: 181 APTSGGFDNFNANAQPS 195

The following BLAST results are available for this feature:
BLAST of MELO3C015891 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU1C_VITVI4.4e-7468.06U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3... [more]
RU1C_ARATH1.2e-6060.95U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=2 S... [more]
RU1C2_SORBI1.2e-6059.13U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor GN=Sb04g028260 PE=3 SV... [more]
RU1C1_SORBI1.8e-5959.66U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor GN=Sb04g009880 PE=3 SV... [more]
RU1C_CHICK4.5e-2642.94U1 small nuclear ribonucleoprotein C OS=Gallus gallus GN=SNRPC PE=3 SV=1[more]
BLAST of MELO3C015891 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K515_CUCSA1.5e-11398.98U1 small nuclear ribonucleoprotein C OS=Cucumis sativus GN=Csa_7G390140 PE=3 SV=... [more]
A0A061FQX2_THECC2.8e-8374.64U1 small nuclear ribonucleoprotein C OS=Theobroma cacao GN=TCM_043735 PE=3 SV=1[more]
A0A0B0NAP9_GOSAR3.7e-8075.00U1 small nuclear ribonucleoprotein C OS=Gossypium arboreum GN=F383_01127 PE=3 SV... [more]
A0A0D2QZJ8_GOSRA8.3e-8075.13U1 small nuclear ribonucleoprotein C OS=Gossypium raimondii GN=B456_004G053600 P... [more]
A0A067KTD1_JATCU1.9e-7971.77U1 small nuclear ribonucleoprotein C OS=Jatropha curcas GN=JCGZ_03689 PE=3 SV=1[more]
BLAST of MELO3C015891 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03120.17.0e-6260.95 C2H2 and C2HC zinc fingers superfamily protein[more]
AT3G19430.18.4e-0733.68 late embryogenesis abundant protein-related / LEA protein-related[more]
AT5G38560.11.9e-0629.66 Protein kinase superfamily protein[more]
AT3G22120.13.2e-0630.53 cell wall-plasma membrane linker protein[more]
AT1G12040.13.2e-0632.17 leucine-rich repeat/extensin 1[more]
BLAST of MELO3C015891 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101099|ref|XP_008451425.1|5.7e-114100.00PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo][more]
gi|449462314|ref|XP_004148886.1|2.2e-11398.98PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis sativus][more]
gi|590566505|ref|XP_007010252.1|4.0e-8374.64C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao][more]
gi|728830437|gb|KHG09880.1|5.4e-8075.00U1 small nuclear ribonucleoprotein C [Gossypium arboreum][more]
gi|823147194|ref|XP_012473506.1|1.2e-7975.13PREDICTED: U1 small nuclear ribonucleoprotein C [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000690Matrin/U1-C_Znf_C2H2
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR017340U1_snRNP-C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005634 nucleus
cellular_component GO:0016020 membrane
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44430melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015891T1MELO3C015891T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44430MU44430transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000690Zinc finger, C2H2-type matrinPROFILEPS50171ZF_MATRINcoord: 4..36
score: 12
IPR003604Zinc finger, U1-typeSMARTSM00451ZnF_U1_5coord: 1..37
score: 1.4
IPR013085Zinc finger, U1-C typePFAMPF06220zf-U1coord: 1..38
score: 4.9
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..168
score: 11
IPR017340U1 small nuclear ribonucleoprotein CPIRPIRSF037969U1-Ccoord: 1..197
score: 3.4
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148FAMILY NOT NAMEDcoord: 2..196
score: 6.6
NoneNo IPR availablePANTHERPTHR31148:SF1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 2..196
score: 6.6
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 1..55
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C015891Csa7G390140Cucumber (Chinese Long) v2cumeB535
MELO3C015891Cla014709Watermelon (97103) v1mewmB199
MELO3C015891ClCG09G006530Watermelon (Charleston Gray)mewcgB175
MELO3C015891Cla97C09G169090Watermelon (97103) v2mewmbB223
MELO3C015891Bhi09G000807Wax gourdmewgoB254
MELO3C015891CSPI07G16550Wild cucumber (PI 183967)cpimeB543
MELO3C015891Cucsa.084690Cucumber (Gy14) v1cgymeB094
MELO3C015891CmaCh17G011370Cucurbita maxima (Rimu)cmameB327
MELO3C015891CmaCh08G003830Cucurbita maxima (Rimu)cmameB825
MELO3C015891CmoCh08G003780Cucurbita moschata (Rifu)cmomeB809
MELO3C015891CmoCh17G011090Cucurbita moschata (Rifu)cmomeB319
MELO3C015891Lsi02G023430Bottle gourd (USVL1VR-Ls)lsimeB186
MELO3C015891Cp4.1LG12g05320Cucurbita pepo (Zucchini)cpemeB124
MELO3C015891Cp4.1LG17g06650Cucurbita pepo (Zucchini)cpemeB300
MELO3C015891CsGy7G015030Cucumber (Gy14) v2cgybmeB473
MELO3C015891Carg22170Silver-seed gourdcarmeB0849
MELO3C015891Carg07211Silver-seed gourdcarmeB0113
MELO3C015891CsaV3_7G028310Cucumber (Chinese Long) v3cucmeB553
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C015891Wild cucumber (PI 183967)cpimeB526
MELO3C015891Cucumber (Chinese Long) v2cumeB522
MELO3C015891Watermelon (Charleston Gray)mewcgB215
MELO3C015891Watermelon (97103) v1mewmB255
MELO3C015891Cucumber (Gy14) v2cgybmeB458
MELO3C015891Cucumber (Chinese Long) v3cucmeB538
MELO3C015891Watermelon (97103) v2mewmbB198