Carg22170 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22170
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U1 small nuclear ribonucleoprotein C
Location	Cucurbita_argyrosperma_scaffold_274 : 151370 .. 155897 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCAGAGACCGACACCGAACAGTATGCTAATGAGGACGCGGGGCCCGAGGGACGATGGATCGTGAGATCCTACATTAATTGAAGAGGGGATCGAAGCACTCCCTTACAAGGACGTGAAAACCTCTCCCTAGTAGACATCATTTTAAAATTGTGAGATTAACAACGAAACATAACGGATTAAAGCGGACAATGTCTGCTTGTGGTAAACTTAGACGATTATAAATGGTATCAGAGCTCGCAGCATTTTATGAAAAAAAATAAAAAAATAAAAAAAAAATAATTAAACATATATATAAAGATATTTCAATTCATGCGATAAATTTGAGATGGATTATTAGAGTTGTTGTATTTGATTAATGTATTTTAAGAGTTTTTATTTACTTTATGTTACAATTACATCATGGTTAATTATACTCAAATTACATCAGGGTTAATTATAACTATTGAGTATGAATGTTACAGATGCCTTTAATAGTTTCATTTTGAAGTAATATAAAGCAGACATGTAAAATATAGTAAACGATGCTCTTTTTTAGCCAAAGAATAAGTTTCTTTGCCATTATATATATATATATATATTTATTTATTTATTTATTTATTTATTTATTTCTTTTATTTTTTATTTTATAATTAAAATCAATATTTAAATTTAATAAAATTGAAAGTTTGTATTAAAAAAATGATATAATTAAACGAGTCATTCTAAAAAAGATCGACCGATGAAGACCGGCCAGACCGGGTTAAGTAAACTCACATGGGGAACCGAACCGATCGGTTTGGATGGTTGATTAAAAATAAGATCGGAAATCGAGTCAATTCTTCGTTCGCAAAAAAGACCAGAAGCTTCTCTCTCAGAGTCGCAGAGTCGCTGATAGGGTTTTTGGTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTAGCGCTATGCCTCGGTTCGTTCTTCCATTTCCATTTGATGCTAAGTCTCAGAGTTTCATCCCTCAATCAAATTTACTTCTCTCTCTATTTTTCTCTACAGTTTATGATTTGATCTTCTCGTTTGCGCGCAGGTATTATTGTGACTATTGTGATACATATCTGACACATGATTCTGTAAGTCATCTTCTTACATTTATATGAAAATGTGATTTCATTTTCGTTTGATCATTGTCCACTTTTTTTTTTGTTTTTTGTTTTTTGTTGTTGTTGTTGTTGATGCTGCAGTTCCTTTTCTTTACGATGAGGAATGTTTTTTGGATAATTAGTTGCTCGAAGGAATTGTAGGAAATTTTAGATTGATATGACTGTGACTGGTGTTGGGATTGGATCGAATGCTCATATTTGTTCTCGATGGATTTAGTTGGCTGTTTGCAGTTTGTATTTATTTATTTATTTTTTTATATGAATCATGGAATTCAGTGTTCATGTTGTTGAGTATATGCAGATTGATTTGTGGTTATATGTGTGTTTAAATGAGAAGCTACAAATTAGGGTTCCTTTTAGACTAGAAAGTACCAAACCTGAAACTGAAGCTACAAATTACATGTCAACGTGAACAAATGATCTAAAGGCTCTCAAACTTTTTGAAAACAAGTAATCGTGAAAAGCTTTAAAGAGAATCTTCCCAAAAGCTGTACGATTTTTATTAATTTGCTTTCCTCCAGTCTTATTTTAAGCTTATGATTTTGTTTGGACTTAATAACCTTAACCTTGGAACCACCATAAGTTGAACTAGTGGTAATTTAAGAGAGAGTTAGTATAAAATGGTGGTCACTTAGCTAGGAATTAAAATTCTACAAGTTTTCTTGGCAACCAAATGTCATTGGGTCAAGCAGTTGGTTGCCTCTTGACATTAGGCTGGGTGTGCAAATGTGGGCTTTTATGCTCGAAGCATATTAAGGAAAGAAAAAATGACCCTTTAGTAATGGATTGACTCTTTGATCTTAAATCAAAACGAAGAAGATATTTCAAAAGCCCAGCTACATTAGAAGCTTGCACCATGTGTAGACTGATGTTTTTTTTTAAGCATGCCTAGTACATAAAGGCTTTTGAAGTTTTGATCCTTCTTCTCATTCTCGCCGTTCTGGCTCAAAGGACTTGAACCGAATAGGGAAAGAAACCCAGCTGATGGTGACTTTTGGGGATGGTATGACCCGTGGACCACTCTTGTGACACATTGAATTGTGAGATTGCCAAAGAATCCCACGCCAAAACCCATAAAACTCTTGCGTTCAAATCAAACATGCCAAACGTCTGGTTTCTTTCAAACTAAGATGGTTTGTGCAATCTTTAATGGTTTATTTCAGTTGTACTTGATTCTTATGTTCTAGACACAGTAGTATTTAGTTCCTTAGCTTTTGCTGTTCGAGTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGAGGGGAGGGATTTATTAATGTCTTATATTGTTCATAATTTGTTTTTTTGGTATCTCAGCCATCTGTGAGGAAACAGCACAATGCAGGCTACAAACATAAGGTATCTTAATCTTACCCACGTCTTCAAGCCAGTTTAGAAATTGAATTTTATAGAAGTTTTATGGTTTTAAAAAACAAAACCACTTCCCGACTTAAAAATTAAAAGAACTTGGTTGGTTACTTGGTTATAGTTTAAGAAACTTGTAAATGTGAAAAGTAAAGAGATAAGATTTTATTGTTCTTAGAGTTTACTTTCTGTCTACCGAAATATGATAATGATTATGATTAGCATCTTTATGTGTATTGTAATTGTAACTTGTATATCCTAAATAAAAGGATAAAGTTTAAAGACATGTGGAAGTACTGAAATATCTTTCCATTCATCCATCCAAAAGAAATTAAAAAAATGAAATTAAATAAAAAGAGGGTGTTTTTAAAGGGGGAAAAAAAAACCCAACAGATTTTAGTTCCTGATTTATTGATGCACTCCAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGGCGTCCCAGGATTAATGCCTGGAATTAGGCCTCCAGTTTTTCCAAGACCAGTACCTGGTGCTCCAGGTAAAGTTCACACTTCTGAGATTTTTTATTTTCTTTTAATGCATATCCCTTGGTCTTTGAGTGTTGTTTAACAATTTGCATTTTATACTAAATCCACCTTATTATTCACTTTGATAAGTAAAATCTGATAGTCAAAGTATTATACAGCTTGAATAGTGGAGATAATTCTTAGACCTGATAAATAAATTCCGAAGTCGAATTTGAGATCTTCAAAATTTGGCTAAATTATAAAAATAATATGGAACTTTGCTCCATGTTTGAAATATACCTCATTCTTTTAAAAATTGCATTATTACTCTTGATTTTAATAAATGTTTCAGTACTACCTTTAGATTAGAAAATTCGTTAAAATGTTGGACCAAAAGTCAATGTGTCGAAACGTTGTTCTTTTAGACTAATCTAGGCAAGCGTCCTAGTCATCGTTACATCATTCTAGGCCATCACCATATCAGTTTTTTGTCTTACATTTTAATGAATTTCTACTCCAATTGTTGTTTTGAAACATCGGTAATATTGCAACCTTGGAAAGATTATGAATATTTTTTAACCCATTGGCAAATTTCAGGGGTCTTTTTTGTTTTTAATAATTTAGCCTTAAAATTATTTCTGTTGGTACAGAAATGATTTTTATTTCTTTCCTTTCAACAATCAATATATGAAATTTCATTATAATATGATCTGTGGAACTGGAAAATGATGAGAGCAATGTAGATTATCTAGCTGCTTCTTGAGGCTGCTTGATTCAACTATTCCTCAATTATTTTTATACCAAAAGTAAACCAAATCAACCAAATGGACTCATGACGGTCACTGTTGTTGGTTCATTCATTTTGGTTTGCTCTCCTAGTCATTTATTGAATTGGATGTATCTAATGCAATAGGTATTGTTTGAACTCCTCTCCTCCTTTGTCAATGTAGGATATCTACCTAATCCTACAATGCCGCCTATGATGGCCCCGCCTGGAGCTCTTATGCCCGGCCAGGTGAATGTTCCATCCAGGCCACCTCCCCCAGCGCCAATTCCCGGGAGCACACCGCAACCGTCTTCAACCAACGGTGCACCATTGACTGCTCCGCAAACGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGTGGGTATGATAGTTTCACCACTATGGCTCAACCTTCCGAGTCTAACCCTTAAAGTTTCATATTGTTGTGCTGTTTGTGTATGATATCCAAAGCTCTTCTAATTCAAACTGAGACAATTGTTCTTAAGATGCCTGAAAAGAAGTTTGGAGCCTAGAGGTTTTAATGTAGAGAAGTTCTTTTAGCAAGTGATGAGCAAAGGGAATTATTTTGGTGGTTGATTCCTTGCTA

mRNA sequence

ATGTTATCAGAGACCGACACCGAACAGTATGCTAATGAGGACGCGGGGCCCGAGGGACGATGGATCCCATCTGTGAGGAAACAGCACAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGGCGTCCCAGGATTAATGCCTGGAATTAGGCCTCCAGTTTTTCCAAGACCAGTACCTGGTGCTCCAGGATATCTACCTAATCCTACAATGCCGCCTATGATGGCCCCGCCTGGAGCTCTTATGCCCGGCCAGGTGAATGTTCCATCCAGGCCACCTCCCCCAGCGCCAATTCCCGGGAGCACACCGCAACCGTCTTCAACCAACGGTGCACCATTGACTGCTCCGCAAACGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGTGGGTATGATAGTTTCACCACTATGGCTCAACCTTCCGAGTCTAACCCTTAAAGTTTCATATTGTTGTGCTGTTTGTGTATGATATCCAAAGCTCTTCTAATTCAAACTGAGACAATTGTTCTTAAGATGCCTGAAAAGAAGTTTGGAGCCTAGAGGTTTTAATGTAGAGAAGTTCTTTTAGCAAGTGATGAGCAAAGGGAATTATTTTGGTGGTTGATTCCTTGCTA

Coding sequence (CDS)

ATGTTATCAGAGACCGACACCGAACAGTATGCTAATGAGGACGCGGGGCCCGAGGGACGATGGATCCCATCTGTGAGGAAACAGCACAATGCAGGCTACAAACATAAGGCAAATGTGCGATCATACTATCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAGCATTTACTCGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGGCGTCCCAGGATTAATGCCTGGAATTAGGCCTCCAGTTTTTCCAAGACCAGTACCTGGTGCTCCAGGATATCTACCTAATCCTACAATGCCGCCTATGATGGCCCCGCCTGGAGCTCTTATGCCCGGCCAGGTGAATGTTCCATCCAGGCCACCTCCCCCAGCGCCAATTCCCGGGAGCACACCGCAACCGTCTTCAACCAACGGTGCACCATTGACTGCTCCGCAAACGTATCAAGCAAATCCAGCAGCACCAGGAAGCGGTGGGTATGATAGTTTCACCACTATGGCTCAACCTTCCGAGTCTAACCCTTAA

Protein sequence

MLSETDTEQYANEDAGPEGRWIPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNPTMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP

Homology

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BLAST of Carg22170 vs. NCBI nr
Match: XP_022959935.1 (U1 small nuclear ribonucleoprotein C [Cucurbita moschata])

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 173/179 (96.65%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMPGG PGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPGGAPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP 202
           XXXXXXXXXXXXXXXX     TNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP
Sbjct: 138 XXXXXXXXXXXXXXXXPQLSSTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP 196

[Close]

BLAST of Carg22170 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMPGG PGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPGGAPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP 202
           XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP 196

[Close]

BLAST of Carg22170 vs. NCBI nr
Match: XP_023004664.1 (U1 small nuclear ribonucleoprotein C [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 7.9e-51
Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMPGG PGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPGGAPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQPSESNP 202
           XXXXXXXXXXXXXXXXXXXXXTNGAPLTAP TYQANPAAPGSGGYDSFTTMAQPSESNP
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPPTYQANPAAPGSGGYDSFTTMAQPSESNP 196

[Close]

BLAST of Carg22170 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 3.4e-46
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAA+NQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPV+PG  PGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVIPGAAPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQP-SESN 201
           XXXXXXXXXXXXXXXXXXXX TNGAPL AP TYQANPAAPGSGGYDSFT+MAQP SESN
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESN 196

[Close]

BLAST of Carg22170 vs. NCBI nr
Match: XP_004148886.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_7G390140 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 4.5e-46
Identity = 170/179 (94.97%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAA+NQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMPG  PG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQP-SESN 201
           XXXXXXXXXXXXXXXXXXXX TNGAPL AP TYQANPAAPGSGGYDSFT+MAQP SESN
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESN 196

[Close]

BLAST of Carg22170 vs. TAIR10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 3.1e-25
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 23 PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
          PSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ   +QQVGA +NQH+L 
Sbjct: 18 PSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTGGYQQVGAVFNQHMLA 77

Query: 83 QRPRLPVLPTP 94
           RPR P++  P
Sbjct: 78 -RPRPPMMLPP 87

[Close]

BLAST of Carg22170 vs. Swiss-Prot
Match: sp|F6HQ26|RU1C_VITVI (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 69/79 (87.34%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 23 PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
          PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ AAFQQVGAAYNQHL+ 
Sbjct: 18 PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLVS 77

Query: 83 -----QRPRLPVLPTPVMP 97
                RPRLPVLPTP MP
Sbjct: 78 FPGNPPRPRLPVLPTPGMP 96

[Close]

BLAST of Carg22170 vs. Swiss-Prot
Match: sp|C5XYW4|RU1C2_SORBI (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-28
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF Q GA +NQH+L 
Sbjct: 18  PSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAF-QAGAPFNQHMLA 77

Query: 83  -----QRPRLPVLPTPVMPGGVP 101
                 RPRLP+LPTP MP G P
Sbjct: 78  FPGAVARPRLPILPTPGMPHGFP 99

[Close]

BLAST of Carg22170 vs. Swiss-Prot
Match: sp|C5XZK6|RU1C1_SORBI (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.4e-28
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF Q GA +NQH+L 
Sbjct: 18  PSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAF-QAGAPFNQHMLT 77

Query: 83  -----QRPRLPVLPTPVMPGGVP 101
                 RPRLP+LPTP MP G P
Sbjct: 78  FPGAVARPRLPILPTPGMPHGFP 99

[Close]

BLAST of Carg22170 vs. Swiss-Prot
Match: sp|Q56XE4|RU1C_ARATH (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 23 PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
          PSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ   +QQVGA +NQH+L 
Sbjct: 18 PSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQTGGYQQVGAVFNQHMLA 77

Query: 83 QRPRLPVLPTP 94
           RPR P++  P
Sbjct: 78 -RPRPPMMLPP 87

[Close]

BLAST of Carg22170 vs. Swiss-Prot
Match: sp|A8XW44|RU1C_CAEBR (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19656 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.2e-07
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRK HN G KHK NVR +YQ++ E Q Q L+DQ       +A A  ++  A  +  +G
Sbjct: 18  PSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ-----TARAFATNRMHGAVPRTTMG 77

Query: 83  QRPRLPVLPTPVMPGGVPGL 103
             P  PV   P+M GG PG+
Sbjct: 78  MAPVPPVGHHPMM-GGPPGM 91

[Close]

BLAST of Carg22170 vs. TrEMBL
Match: tr|A0A1S3BS92|A0A1S3BS92_CUCME (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 170/179 (94.97%), Postives = 173/179 (96.65%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAA+NQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPV+PG  PGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVIPGAAPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQP-SESN 201
           XXXXXXXXXXXXXXXXXXXX TNGAPL AP TYQANPAAPGSGGYDSFT+MAQP SESN
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESN 196

[Close]

BLAST of Carg22170 vs. TrEMBL
Match: tr|A0A0A0K515|A0A0A0K515_CUCSA (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 170/179 (94.97%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAA+NQHLLG
Sbjct: 18  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLG 77

Query: 83  QRPRLPVLPTPVMPGGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMPG  PG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPGAAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXTNGAPLTAPQTYQANPAAPGSGGYDSFTTMAQP-SESN 201
           XXXXXXXXXXXXXXXXXXXX TNGAPL AP TYQANPAAPGSGGYDSFT+MAQP SESN
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESN 196

[Close]

BLAST of Carg22170 vs. TrEMBL
Match: tr|A0A0D2P848|A0A0D2P848_GOSRA (U1 small nuclear ribonucleoprotein C OS=Gossypium raimondii OX=29730 GN=B456_007G132200 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 141/190 (74.21%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHL+ 
Sbjct: 18  PSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAFNQHLMA 77

Query: 83  QRPRLPVLPTPVMP-----------GGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLPVLPTPVMP             VPG+    XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPVLPTPVMPIPRGAPLPINQPMVPGIRPPVXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGAP-LTAPQTYQANPAAPGSGGYDSF 201
           XXXXXXXXXXXXXXXXXXXXXX          +N AP +  P  YQ+NPAAP SGG+D+F
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXVTVTATTPTSSNAAPTMATPALYQSNPAAPASGGFDNF 197

[Close]

BLAST of Carg22170 vs. TrEMBL
Match: tr|A0A2P5Y8F4|A0A2P5Y8F4_GOSBA (U1 small nuclear ribonucleoprotein C OS=Gossypium barbadense OX=3634 GN=GOBAR_AA08755 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 143/190 (75.26%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHL+ 
Sbjct: 129 PSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAFNQHLMA 188

Query: 83  QRPRLPVLPTPVMP-----------GGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLP+LPTPVMP             VPG+    XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 189 QRPRLPILPTPVMPIPRGAPLPINQPMVPGIRPPVXXXXXXXXXXXXXXXXXXXXXXXXX 248

Query: 143 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGAP-LTAPQTYQANPAAPGSGGYDSF 201
           XXXXXXXXXXXXXXXXXXXXXXXXX       +N AP +  P  YQ+NPAAP SGG+D+F
Sbjct: 249 XXXXXXXXXXXXXXXXXXXXXXXXXTATTPTSSNAAPTMATPALYQSNPAAPASGGFDNF 308

[Close]

BLAST of Carg22170 vs. TrEMBL
Match: tr|A0A1U8L7M0|A0A1U8L7M0_GOSHI (U1 small nuclear ribonucleoprotein C OS=Gossypium hirsutum OX=3635 GN=LOC107924596 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 143/190 (75.26%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 23  PSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLG 82
           PSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQAAAF QVGAA+NQHL+ 
Sbjct: 18  PSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFHQVGAAFNQHLMA 77

Query: 83  QRPRLPVLPTPVMP-----------GGVPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           QRPRLP+LP PVMP             VPG+   XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 78  QRPRLPILPNPVMPIPRGAPLPINQPMVPGIRPPXXXXXXXXXXXXXXXXXXXXXXXXXX 137

Query: 143 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGAP-LTAPQTYQANPAAPGSGGYDSF 201
           XXXXXXXXXXXXXXXXXXXXXXXXX       +N AP +  P  YQ+NPAAP SGG+D+F
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXXXXTATTPTSSNAAPTMATPALYQSNPAAPASGGFDNF 197

The following BLAST results are available for this feature:

BLAST of Carg22170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959935.1	1.6e-51	96.65	U1 small nuclear ribonucleoprotein C [Cucurbita moschata]	[more]
XP_023515032.1	1.6e-51	99.44	U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo]	[more]
XP_023004664.1	7.9e-51	98.88	U1 small nuclear ribonucleoprotein C [Cucurbita maxima]	[more]
XP_008451425.1	3.4e-46	94.97	PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo]	[more]
XP_004148886.1	4.5e-46	94.97	PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hy...	[more]

BLAST of Carg22170 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03120.1	3.1e-25	78.87	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Carg22170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F6HQ26\|RU1C_VITVI	1.8e-30	87.34	U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0...	[more]
sp\|C5XYW4\|RU1C2_SORBI	3.8e-28	79.52	U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260...	[more]
sp\|C5XZK6\|RU1C1_SORBI	6.4e-28	79.52	U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880...	[more]
sp\|Q56XE4\|RU1C_ARATH	5.6e-24	78.87	U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312...	[more]
sp\|A8XW44\|RU1C_CAEBR	6.2e-07	43.75	U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19...	[more]

BLAST of Carg22170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BS92\|A0A1S3BS92_CUCME	2.3e-46	94.97	U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=...	[more]
tr\|A0A0A0K515\|A0A0A0K515_CUCSA	3.0e-46	94.97	U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ...	[more]
tr\|A0A0D2P848\|A0A0D2P848_GOSRA	5.3e-35	74.21	U1 small nuclear ribonucleoprotein C OS=Gossypium raimondii OX=29730 GN=B456_007...	[more]
tr\|A0A2P5Y8F4\|A0A2P5Y8F4_GOSBA	6.9e-35	75.26	U1 small nuclear ribonucleoprotein C OS=Gossypium barbadense OX=3634 GN=GOBAR_AA...	[more]
tr\|A0A1U8L7M0\|A0A1U8L7M0_GOSHI	2.6e-34	75.26	U1 small nuclear ribonucleoprotein C OS=Gossypium hirsutum OX=3635 GN=LOC1079245...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome
GO:0000387	spliceosomal snRNP assembly

Vocabulary: **Cellular Component**
Term	Definition
GO:0005685	U1 snRNP

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf
IPR017340	U1_snRNP-C
IPR013085	U1-CZ_Znf_C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22170-RA	Carg22170-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 22..65 e-value: 3.0E-15 score: 58.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..180
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 23..43 e-value: 3.5E-7 score: 29.8
IPR017340	U1 small nuclear ribonucleoprotein C	PIRSF	PIRSF037969	U1-C	coord: 22..200 e-value: 2.5E-19 score: 69.0
IPR017340	U1 small nuclear ribonucleoprotein C	PANTHER	PTHR31148	FAMILY NOT NAMED	coord: 23..174
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 23..60

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22170	Cla014709	Watermelon (97103) v1	carwmB0861
Carg22170	Csa7G390140	Cucumber (Chinese Long) v2	carcuB0875
Carg22170	MELO3C015891	Melon (DHL92) v3.5.1	carmeB0849
Carg22170	ClCG09G006530	Watermelon (Charleston Gray)	carwcgB0833
Carg22170	CSPI07G16550	Wild cucumber (PI 183967)	carcpiB0895
Carg22170	Cucsa.084690	Cucumber (Gy14) v1	carcgyB0980
Carg22170	CmaCh08G003830	Cucurbita maxima (Rimu)	carcmaB1192
Carg22170	CmaCh17G011370	Cucurbita maxima (Rimu)	carcmaB1191
Carg22170	CmoCh08G003780	Cucurbita moschata (Rifu)	carcmoB1161
Carg22170	CmoCh17G011090	Cucurbita moschata (Rifu)	carcmoB1160
Carg22170	Lsi02G023430	Bottle gourd (USVL1VR-Ls)	carlsiB782
Carg22170	Cp4.1LG12g05320	Cucurbita pepo (Zucchini)	carcpeB1198
Carg22170	Cp4.1LG17g06650	Cucurbita pepo (Zucchini)	carcpeB1200
Carg22170	CsGy7G015030	Cucumber (Gy14) v2	carcgybB0849
Carg22170	MELO3C015891.2	Melon (DHL92) v3.6.1	carmedB0860
Carg22170	Cla97C09G169090	Watermelon (97103) v2	carwmbB0897
Carg22170	Bhi09G000807	Wax gourd	carwgoB1004

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22170	Carg07211	Silver-seed gourd	carcarB135

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22170	Cucumber (Gy14) v2	carcgybB0850
Carg22170	Cucumber (Gy14) v1	carcgyB0981
Carg22170	Cucurbita pepo (Zucchini)	carcpeB1199
Carg22170	Cucurbita pepo (Zucchini)	carcpeB1201
Carg22170	Cucumber (Chinese Long) v3	carcucB0899