MELO3C015862.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015862.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 31138512 .. 31139027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAAGAAACCAAGCTCTGGTTCTTTCAAAAGGAACCTGACCGCGACGACTGTTCGAAGAGTGCTTCAAAGATAGAACATGACAGCATTGAATCTGATAGTTACGATGAAGATGACAACAAACAGTTTGGTTGGCATTCACAACATAAGTGTGTAACAGAAACAATGGAAATGAAGGAAGCTACGTCTTCTGATGTTCATTCGTGTTCGTATTCACAGAGCTTGCCGCCTATGTCTTCTAATGTCCATGCATATCCGTATTCTCGGAGCTTGCTGCCTGCTAAGTCTTCTAATGTTCATGCATACTCGTATTCTCGGAGTTTGCCTCGATTTGGATACCAAACTGGGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCACAGTTACCACTTACAACCACATCCGCAGCCACCTACTTATCATTATTTTCAGAATCGATCTCCCCCTCGAGATAATCCTATGGTGCATTATACTGACTACAGAGACAATTATAGGTTCTAG

mRNA sequence

ATGGGCAAAGAAACCAAGCTCTGGTTCTTTCAAAAGGAACCTGACCGCGACGACTGTTCGAAGAGTGCTTCAAAGATAGAACATGACAGCATTGAATCTGATAGTTACGATGAAGATGACAACAAACAGTTTGGTTGGCATTCACAACATAAGTGTGTAACAGAAACAATGGAAATGAAGGAAGCTACGTCTTCTGATGTTCATTCGTGTTCGTATTCACAGAGCTTGCCGCCTATGTCTTCTAATGTCCATGCATATCCGTATTCTCGGAGCTTGCTGCCTGCTAAGTCTTCTAATGTTCATGCATACTCGTATTCTCGGAGTTTGCCTCGATTTGGATACCAAACTGGGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCACAGTTACCACTTACAACCACATCCGCAGCCACCTACTTATCATTATTTTCAGAATCGATCTCCCCCTCGAGATAATCCTATGGTGCATTATACTGACTACAGAGACAATTATAGGTTCTAG

Coding sequence (CDS)

ATGGGCAAAGAAACCAAGCTCTGGTTCTTTCAAAAGGAACCTGACCGCGACGACTGTTCGAAGAGTGCTTCAAAGATAGAACATGACAGCATTGAATCTGATAGTTACGATGAAGATGACAACAAACAGTTTGGTTGGCATTCACAACATAAGTGTGTAACAGAAACAATGGAAATGAAGGAAGCTACGTCTTCTGATGTTCATTCGTGTTCGTATTCACAGAGCTTGCCGCCTATGTCTTCTAATGTCCATGCATATCCGTATTCTCGGAGCTTGCTGCCTGCTAAGTCTTCTAATGTTCATGCATACTCGTATTCTCGGAGTTTGCCTCGATTTGGATACCAAACTGGGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCACAGTTACCACTTACAACCACATCCGCAGCCACCTACTTATCATTATTTTCAGAATCGATCTCCCCCTCGAGATAATCCTATGGTGCATTATACTGACTACAGAGACAATTATAGGTTCTAG

Protein sequence

MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMKEATSSDVHSCSYSQSLPPMSSNVHAYPYSRSLLPAKSSNVHAYSYSRSLPRFGYQTGWPYQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF

Homology

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BLAST of MELO3C015862.2 vs. NCBI nr
Match: XP_016901095.1 (PREDICTED: uncharacterized protein LOC103492695 [Cucumis melo])

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60
           MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK
Sbjct: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60

Query: 61  EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY 120
           EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY
Sbjct: 61  EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY 120

Query: 121 QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 172
           QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF
Sbjct: 121 QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 171

[Close]

BLAST of MELO3C015862.2 vs. NCBI nr
Match: XP_011659329.1 (PREDICTED: uncharacterized protein LOC105436166 [Cucumis sativus] >KGN44864.1 hypothetical protein Csa_7G392370 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 5.9e-63
Identity = 144/172 (83.72%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60
           MGKE KLWFFQKE DRDDCSKSA KIEHDSIESDS +EDDNK F WHSQHKCVTET++MK
Sbjct: 68  MGKEAKLWFFQKESDRDDCSKSALKIEHDSIESDSNNEDDNKLFDWHSQHKCVTETIQMK 127

Query: 61  EATSSDVHSCSYSQSL-PPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWP 120
           EATSSDVHSCSYSQSL PP+           XXXXXXXXXXXXXXXXXXXP+FGYQTGWP
Sbjct: 128 EATSSDVHSCSYSQSLPPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFGYQTGWP 187

Query: 121 YQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 172
           YQQSVPGHTFTPHS +LQPHP PP YHYFQ+RSPPRDNPMVHYTDYRDNYRF
Sbjct: 188 YQQSVPGHTFTPHSSYLQPHPPPPAYHYFQHRSPPRDNPMVHYTDYRDNYRF 239

[Close]

BLAST of MELO3C015862.2 vs. NCBI nr
Match: XP_023548357.1 (heavy metal-associated isoprenylated plant protein 42-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 100/174 (57.47%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDD----CSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTET 60
           MGKE KLWFFQ+E +  +     S+S S IEHD I SDS  E++ + F WH         
Sbjct: 128 MGKEAKLWFFQQESNCSEKTTGRSRSGSNIEHDGIGSDSIIENETR-FDWHL-------- 187

Query: 61  MEMKEATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQT 120
                AT    H   + QSLP MSS+V+   Y     XXXXXXXXXXXXXXXXPR GY  
Sbjct: 188 -----ATGMKEHDRGF-QSLPTMSSDVNGCSYPWSLSXXXXXXXXXXXXXXXXPRLGYGP 247

Query: 121 GWPYQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYR 171
            WPYQQSVPGH  TPH Y+LQPHP PP Y +FQ RSPPR NPMVHYTDY DNYR
Sbjct: 248 MWPYQQSVPGHRLTPHGYYLQPHP-PPAYRHFQPRSPPRVNPMVHYTDYADNYR 285

[Close]

BLAST of MELO3C015862.2 vs. NCBI nr
Match: XP_023548358.1 (heavy metal-associated isoprenylated plant protein 42-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 100/174 (57.47%), Postives = 112/174 (64.37%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDD----CSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTET 60
           MGKE KLWFFQ+E +  +     S+S S IEHD I SDS  E++ + F WH         
Sbjct: 68  MGKEAKLWFFQQESNCSEKTTGRSRSGSNIEHDGIGSDSIIENETR-FDWHL-------- 127

Query: 61  MEMKEATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQT 120
                AT    H   + QSLP MSS+V+   Y     XXXXXXXXXXXXXXXXPR GY  
Sbjct: 128 -----ATGMKEHDRGF-QSLPTMSSDVNGCSYPWSLSXXXXXXXXXXXXXXXXPRLGYGP 187

Query: 121 GWPYQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYR 171
            WPYQQSVPGH  TPH Y+LQPHP PP Y +FQ RSPPR NPMVHYTDY DNYR
Sbjct: 188 MWPYQQSVPGHRLTPHGYYLQPHP-PPAYRHFQPRSPPRVNPMVHYTDYADNYR 225

[Close]

BLAST of MELO3C015862.2 vs. NCBI nr
Match: XP_022992551.1 (heavy metal-associated isoprenylated plant protein 42-like [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 95/174 (54.60%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDDCS----KSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTET 60
           MGKE KLWFFQ+E D ++ +    KS S IEH    SDS  E++   F WH         
Sbjct: 68  MGKEAKLWFFQQESDCNEKTTERLKSGSNIEHGGTGSDSITENET-HFDWHL-------- 127

Query: 61  MEMKEATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQT 120
                AT    H   + QSLP MSS+V+   Y R  XXXXXXXXXXXXXXXXX R G + 
Sbjct: 128 -----ATGMKEHDRGF-QSLPTMSSDVNGCSYPRSLXXXXXXXXXXXXXXXXXXRLGNRP 187

Query: 121 GWPYQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYR 171
            WPY+QSVP H  TPH Y+LQPHP  P Y +FQ  SPPR NPMVHYTDY DNYR
Sbjct: 188 MWPYRQSVPRHRLTPHGYYLQPHPL-PAYRHFQPWSPPRANPMVHYTDYADNYR 225

[Close]

BLAST of MELO3C015862.2 vs. TrEMBL
Match: tr|A0A1S4DZF3|A0A1S4DZF3_CUCME (uncharacterized protein LOC103492695 OS=Cucumis melo OX=3656 GN=LOC103492695 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.0e-83
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60
           MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK
Sbjct: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60

Query: 61  EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY 120
           EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY
Sbjct: 61  EATSSDVHSCSYSQSLPPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWPY 120

Query: 121 QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 172
           QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF
Sbjct: 121 QQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 171

[Close]

BLAST of MELO3C015862.2 vs. TrEMBL
Match: tr|A0A0A0K7J5|A0A0A0K7J5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392370 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.9e-63
Identity = 144/172 (83.72%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 1   MGKETKLWFFQKEPDRDDCSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTETMEMK 60
           MGKE KLWFFQKE DRDDCSKSA KIEHDSIESDS +EDDNK F WHSQHKCVTET++MK
Sbjct: 68  MGKEAKLWFFQKESDRDDCSKSALKIEHDSIESDSNNEDDNKLFDWHSQHKCVTETIQMK 127

Query: 61  EATSSDVHSCSYSQSL-PPMSSNVHAYPYSRXXXXXXXXXXXXXXXXXXXPRFGYQTGWP 120
           EATSSDVHSCSYSQSL PP+           XXXXXXXXXXXXXXXXXXXP+FGYQTGWP
Sbjct: 128 EATSSDVHSCSYSQSLPPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFGYQTGWP 187

Query: 121 YQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMVHYTDYRDNYRF 172
           YQQSVPGHTFTPHS +LQPHP PP YHYFQ+RSPPRDNPMVHYTDYRDNYRF
Sbjct: 188 YQQSVPGHTFTPHSSYLQPHPPPPAYHYFQHRSPPRDNPMVHYTDYRDNYRF 239

The following BLAST results are available for this feature:

BLAST of MELO3C015862.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901095.1	3.0e-83	100.00	PREDICTED: uncharacterized protein LOC103492695 [Cucumis melo]	[more]
XP_011659329.1	5.9e-63	83.72	PREDICTED: uncharacterized protein LOC105436166 [Cucumis sativus] >KGN44864.1 hy...	[more]
XP_023548357.1	6.1e-28	57.47	heavy metal-associated isoprenylated plant protein 42-like isoform X1 [Cucurbita...	[more]
XP_023548358.1	6.1e-28	57.47	heavy metal-associated isoprenylated plant protein 42-like isoform X2 [Cucurbita...	[more]
XP_022992551.1	2.0e-23	54.60	heavy metal-associated isoprenylated plant protein 42-like [Cucurbita maxima]	[more]

BLAST of MELO3C015862.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015862.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015862.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZF3\|A0A1S4DZF3_CUCME	2.0e-83	100.00	uncharacterized protein LOC103492695 OS=Cucumis melo OX=3656 GN=LOC103492695 PE=...	[more]
tr\|A0A0A0K7J5\|A0A0A0K7J5_CUCSA	3.9e-63	83.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392370 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0030001	metal ion transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005618	cell wall
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015862.2.1	MELO3C015862.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015862.2	Csa7G392370	Cucumber (Chinese Long) v2	cumedB514
MELO3C015862.2	CSPI07G16800	Wild cucumber (PI 183967)	cpimedB528
MELO3C015862.2	CmaCh17G011570	Cucurbita maxima (Rimu)	cmamedB380
MELO3C015862.2	CmoCh17G011330	Cucurbita moschata (Rifu)	cmomedB366
MELO3C015862.2	Lsi02G023130	Bottle gourd (USVL1VR-Ls)	lsimedB195
MELO3C015862.2	Cp4.1LG12g12010	Cucurbita pepo (Zucchini)	cpemedB151
MELO3C015862.2	Cla014740	Watermelon (97103) v1	medwmB195
MELO3C015862.2	ClCG09G006850	Watermelon (Charleston Gray)	medwcgB170
MELO3C015862.2	Cla97C09G169420	Watermelon (97103) v2	medwmbB208
MELO3C015862.2	Carg07230	Silver-seed gourd	carmedB0115
MELO3C015862.2	CsaV3_7G028570	Cucumber (Chinese Long) v3	cucmedB541

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015862.2	Cucumber (Chinese Long) v3	cucmedB179
MELO3C015862.2	Wax gourd	medwgoB255
MELO3C015862.2	Cucumber (Gy14) v2	cgybmedB470
MELO3C015862.2	Cucumber (Gy14) v1	cgymedB092
MELO3C015862.2	Cucurbita maxima (Rimu)	cmamedB923
MELO3C015862.2	Cucurbita moschata (Rifu)	cmomedB912
MELO3C015862.2	Cucurbita pepo (Zucchini)	cpemedB348
MELO3C015862.2	Wild cucumber (PI 183967)	cpimedB176
MELO3C015862.2	Cucumber (Chinese Long) v2	cumedB177
MELO3C015862.2	Melon (DHL92) v3.6.1	medmedB092
MELO3C015862.2	Watermelon (97103) v1	medwmB228
MELO3C015862.2	Silver-seed gourd	carmedB0860