Lsi02G023130 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi02G023130
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr02 : 29742846 .. 29743349 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAAGAAGCCAAGCTCTTGTTCTTTCGAAAGGAACCTGACCACGACGATGAAGCCACTGACTGTTCGAAGAGTGCTTCGAAGATCGAACATGGTGGCATTGAATCTGATAGTAACAATGAAGATGATAAACAGTTTGATTGGCATTCACAACATACGTGTGTAACAGAGACAATGGGAATGAAGGAACAAGATTGGGGGTTTCGGAGCTTGCCTGCTATGTCTTCTGATGTTCATATGTGTTTGTATTCCCGGAGCTTGCCGCCTGCTATGTCTTCTAATGTTCATGCGTATTCGTATTCTCAGAGCTTGCCTCGACTTGGATACCGACCTGTGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCATGGTTACTACTTGCAGCCACATCCCCCGCCGACTTATCGTTATTTTTGGCCTCGATCTCCCCCTCGAGATAATCCTATGATGCAGCATTATACTGACTATGCAGACAATTATAGGTTATAG

mRNA sequence

ATGGGCAAAGAAGCCAAGCTCTTGTTCTTTCGAAAGGAACCTGACCACGACGATGAAGCCACTGACTGTTCGAAGAGTGCTTCGAAGATCGAACATGGTGGCATTGAATCTGATAGTAACAATGAAGATGATAAACAGTTTGATTGGCATTCACAACATACGTGTGTAACAGAGACAATGGGAATGAAGGAACAAGATTGGGGGTTTCGGAGCTTGCCTGCTATGTCTTCTGATGTTCATATGTGTTTGTATTCCCGGAGCTTGCCGCCTGCTATGTCTTCTAATGTTCATGCGTATTCGTATTCTCAGAGCTTGCCTCGACTTGGATACCGACCTGTGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCATGGTTACTACTTGCAGCCACATCCCCCGCCGACTTATCGTTATTTTTGGCCTCGATCTCCCCCTCGAGATAATCCTATGATGCAGCATTATACTGACTATGCAGACAATTATAGGTTATAG

Coding sequence (CDS)

ATGGGCAAAGAAGCCAAGCTCTTGTTCTTTCGAAAGGAACCTGACCACGACGATGAAGCCACTGACTGTTCGAAGAGTGCTTCGAAGATCGAACATGGTGGCATTGAATCTGATAGTAACAATGAAGATGATAAACAGTTTGATTGGCATTCACAACATACGTGTGTAACAGAGACAATGGGAATGAAGGAACAAGATTGGGGGTTTCGGAGCTTGCCTGCTATGTCTTCTGATGTTCATATGTGTTTGTATTCCCGGAGCTTGCCGCCTGCTATGTCTTCTAATGTTCATGCGTATTCGTATTCTCAGAGCTTGCCTCGACTTGGATACCGACCTGTGTGGCCATATCAGCAATCAGTTCCTGGCCATACATTCACACCTCATGGTTACTACTTGCAGCCACATCCCCCGCCGACTTATCGTTATTTTTGGCCTCGATCTCCCCCTCGAGATAATCCTATGATGCAGCATTATACTGACTATGCAGACAATTATAGGTTATAG

Protein sequence

MGKEAKLLFFRKEPDHDDEATDCSKSASKIEHGGIESDSNNEDDKQFDWHSQHTCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSSNVHAYSYSQSLPRLGYRPVWPYQQSVPGHTFTPHGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNYRL

Homology

[Close]

BLAST of Lsi02G023130 vs. TrEMBL
Match: A0A0A0K7J5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392370 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.0e-54
Identity = 122/185 (65.95%), Postives = 129/185 (69.73%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDEATDCSKSASKIEHGGIESDSNNEDD-KQFDWHSQHTCVTET 60
           MGKEAKL FF+KE D DD    CSKSA KIEH  IESDSNNEDD K FDWHSQH CVTET
Sbjct: 68  MGKEAKLWFFQKESDRDD----CSKSALKIEHDSIESDSNNEDDNKLFDWHSQHKCVTET 127

Query: 61  MGMKEQDWGFRSLPAMSSDVHMCLYSRSLP-----------------PAMSSNVHAYSYS 120
           + MKE         A SSDVH C YS+SLP                 PAMSSNVH YSYS
Sbjct: 128 IQMKE---------ATSSDVHSCSYSQSLPPPLFSNVHAYPHSRSLLPAMSSNVHVYSYS 187

Query: 121 QSLPRLGYRPVWPYQQSVPGHTFTPHGYYLQPH-PPPTYRYFWPRSPPRDNPMMQHYTDY 167
           +SLP+ GY+  WPYQQSVPGHTFTPH  YLQPH PPP Y YF  RSPPRDNPM+ HYTDY
Sbjct: 188 RSLPQFGYQTGWPYQQSVPGHTFTPHSSYLQPHPPPPAYHYFQHRSPPRDNPMV-HYTDY 238

[Close]

BLAST of Lsi02G023130 vs. TrEMBL
Match: M5VNH0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020433mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-09
Identity = 60/181 (33.15%), Postives = 87/181 (48.07%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDE------------ATDCSKSASKIEHGGIESDSNNEDDKQFD 60
           M K+A+L  F+KEP  ++               DCS    + E     S S++E  +   
Sbjct: 58  MDKKAELWSFQKEPYKNNVNIGASTKYNIQIGEDCSCDGDEAE-----SSSDDESKRSIA 117

Query: 61  WHSQHTCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSS-NVHAYSYSQSLPR 120
              QH  +T     K++  G +    M   + M +  +  PP   S  + A+     +P 
Sbjct: 118 PKKQHGVLTWAKNDKKKKNG-KGFSGMGMGMGMPMPPQHRPPMRPSMGIPAHRSFHGMPG 177

Query: 121 LGYRPVWPYQQSVPGHTFTP--HGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNY 167
           LGY P  P+ Q +  H  +P  +GYY Q  PPP Y YF  RSPP+ NP++ HYT+YADNY
Sbjct: 178 LGYWPPNPFYQPMAYHRSSPSPYGYYGQIQPPP-YSYFQSRSPPKVNPIV-HYTNYADNY 230

[Close]

BLAST of Lsi02G023130 vs. TrEMBL
Match: M5VVD1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019646mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.9e-07
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDD----EATDCSKSASK---IEHGGIESDSNNEDDKQFDWHSQH 60
           M K+A+L  F+KEP  ++     +T C+    +    +    ES S++E  +      QH
Sbjct: 53  MDKKAELWSFQKEPYKNNVNIGASTKCNIQIGEDCSCDGDEAESSSDDESKRSIVPKKQH 112

Query: 61  TCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSS-NVHAYSYSQSLPRLGYRP 120
             +T     K++  G +    M   + M +  +  PP   S  + A+     +PR GY+P
Sbjct: 113 GVLTWAKNDKKKKNG-KGFSGMGMGMGMPMPPQRRPPMRPSMGIPAHRSFHGIPRPGYQP 172

Query: 121 VWPYQQSVPGHTFTP--HGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNYR 167
              Y Q +  +  +P  +GYY Q  PPP Y  F  RSPP  NP++ HYT+YADNYR
Sbjct: 173 PNSYYQPMTYYRPSPPPYGYYGQIQPPP-YSCFQSRSPPNVNPII-HYTNYADNYR 225

[Close]

BLAST of Lsi02G023130 vs. NCBI nr
Match: gi|659101033|ref|XP_008451394.1| (PREDICTED: uncharacterized protein LOC103492695 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-57
Identity = 125/175 (71.43%), Postives = 133/175 (76.00%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDEATDCSKSASKIEHGGIESDSNNEDD-KQFDWHSQHTCVTET 60
           MGKE KL FF+KEPD DD    CSKSASKIEH  IESDS +EDD KQF WHSQH CVTET
Sbjct: 68  MGKETKLWFFQKEPDRDD----CSKSASKIEHDSIESDSYDEDDNKQFGWHSQHKCVTET 127

Query: 61  MGMKEQDWG-------FRSLPAMSSDVHMCLYSRSLPPAMSSNVHAYSYSQSLPRLGYRP 120
           M MKE            +SLP MSS+VH   YSRSL PA SSNVHAYSYS+SLPR GY+ 
Sbjct: 128 MEMKEATSSDVHSCSYSQSLPPMSSNVHAYPYSRSLLPAKSSNVHAYSYSRSLPRFGYQT 187

Query: 121 VWPYQQSVPGHTFTPHGYYLQPHP-PPTYRYFWPRSPPRDNPMMQHYTDYADNYR 167
            WPYQQSVPGHTFTPH Y+LQPHP PPTY YF  RSPPRDNPM+ HYTDY DNYR
Sbjct: 188 GWPYQQSVPGHTFTPHSYHLQPHPQPPTYHYFQNRSPPRDNPMV-HYTDYRDNYR 237

[Close]

BLAST of Lsi02G023130 vs. NCBI nr
Match: gi|778727852|ref|XP_011659329.1| (PREDICTED: uncharacterized protein LOC105436166 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 4.3e-54
Identity = 122/185 (65.95%), Postives = 129/185 (69.73%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDEATDCSKSASKIEHGGIESDSNNEDD-KQFDWHSQHTCVTET 60
           MGKEAKL FF+KE D DD    CSKSA KIEH  IESDSNNEDD K FDWHSQH CVTET
Sbjct: 68  MGKEAKLWFFQKESDRDD----CSKSALKIEHDSIESDSNNEDDNKLFDWHSQHKCVTET 127

Query: 61  MGMKEQDWGFRSLPAMSSDVHMCLYSRSLP-----------------PAMSSNVHAYSYS 120
           + MKE         A SSDVH C YS+SLP                 PAMSSNVH YSYS
Sbjct: 128 IQMKE---------ATSSDVHSCSYSQSLPPPLFSNVHAYPHSRSLLPAMSSNVHVYSYS 187

Query: 121 QSLPRLGYRPVWPYQQSVPGHTFTPHGYYLQPH-PPPTYRYFWPRSPPRDNPMMQHYTDY 167
           +SLP+ GY+  WPYQQSVPGHTFTPH  YLQPH PPP Y YF  RSPPRDNPM+ HYTDY
Sbjct: 188 RSLPQFGYQTGWPYQQSVPGHTFTPHSSYLQPHPPPPAYHYFQHRSPPRDNPMV-HYTDY 238

[Close]

BLAST of Lsi02G023130 vs. NCBI nr
Match: gi|595799859|ref|XP_007201588.1| (hypothetical protein PRUPE_ppa020433mg, partial [Prunus persica])

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 60/181 (33.15%), Postives = 87/181 (48.07%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDE------------ATDCSKSASKIEHGGIESDSNNEDDKQFD 60
           M K+A+L  F+KEP  ++               DCS    + E     S S++E  +   
Sbjct: 58  MDKKAELWSFQKEPYKNNVNIGASTKYNIQIGEDCSCDGDEAE-----SSSDDESKRSIA 117

Query: 61  WHSQHTCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSS-NVHAYSYSQSLPR 120
              QH  +T     K++  G +    M   + M +  +  PP   S  + A+     +P 
Sbjct: 118 PKKQHGVLTWAKNDKKKKNG-KGFSGMGMGMGMPMPPQHRPPMRPSMGIPAHRSFHGMPG 177

Query: 121 LGYRPVWPYQQSVPGHTFTP--HGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNY 167
           LGY P  P+ Q +  H  +P  +GYY Q  PPP Y YF  RSPP+ NP++ HYT+YADNY
Sbjct: 178 LGYWPPNPFYQPMAYHRSSPSPYGYYGQIQPPP-YSYFQSRSPPKVNPIV-HYTNYADNY 230

[Close]

BLAST of Lsi02G023130 vs. NCBI nr
Match: gi|645258820|ref|XP_008235064.1| (PREDICTED: uncharacterized protein LOC103333926 [Prunus mume])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 58/176 (32.95%), Postives = 87/176 (49.43%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDDEATDCSKSAS-------KIEHGGIESDSNNEDDKQFDWHSQH 60
           M K+A+L  F+KEP  ++     S + +         +    ES S++E  +      QH
Sbjct: 67  MDKKAELWSFQKEPYKNNVNIGASTNYNIQIGEDCSCDGDEAESSSDDESKRSIAPKKQH 126

Query: 61  TCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSS-NVHAYSYSQSLPRLGYRP 120
             +T     K++  G +    M   + + +  +  PP   S  + A+     +P LGYR 
Sbjct: 127 GVLTWAKNDKKKKNG-KGFSGMGMGMGIPMPPQHRPPMRPSMGIPAHRSFHGMPGLGYRS 186

Query: 121 VWPYQQSVPGHTFTP--HGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNYR 167
             PY QS+  H  +P  + YY Q  PPP Y YF  RSPP+ NP++ HYT+YADNYR
Sbjct: 187 PNPYYQSMEYHRPSPPPYDYYAQIQPPP-YSYFQSRSPPKVNPIV-HYTNYADNYR 239

[Close]

BLAST of Lsi02G023130 vs. NCBI nr
Match: gi|595817058|ref|XP_007204155.1| (hypothetical protein PRUPE_ppa019646mg [Prunus persica])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 1


Query: 1   MGKEAKLLFFRKEPDHDD----EATDCSKSASK---IEHGGIESDSNNEDDKQFDWHSQH 60
           M K+A+L  F+KEP  ++     +T C+    +    +    ES S++E  +      QH
Sbjct: 53  MDKKAELWSFQKEPYKNNVNIGASTKCNIQIGEDCSCDGDEAESSSDDESKRSIVPKKQH 112

Query: 61  TCVTETMGMKEQDWGFRSLPAMSSDVHMCLYSRSLPPAMSS-NVHAYSYSQSLPRLGYRP 120
             +T     K++  G +    M   + M +  +  PP   S  + A+     +PR GY+P
Sbjct: 113 GVLTWAKNDKKKKNG-KGFSGMGMGMGMPMPPQRRPPMRPSMGIPAHRSFHGIPRPGYQP 172

Query: 121 VWPYQQSVPGHTFTP--HGYYLQPHPPPTYRYFWPRSPPRDNPMMQHYTDYADNYR 167
              Y Q +  +  +P  +GYY Q  PPP Y  F  RSPP  NP++ HYT+YADNYR
Sbjct: 173 PNSYYQPMTYYRPSPPPYGYYGQIQPPP-YSCFQSRSPPNVNPII-HYTNYADNYR 225

The following BLAST results are available for this feature:

BLAST of Lsi02G023130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi02G023130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7J5_CUCSA	3.0e-54	65.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G392370 PE=4 SV=1	[more]
M5VNH0_PRUPE	8.5e-09	33.15	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020433mg PE=4 S...	[more]
M5VVD1_PRUPE	7.9e-07	32.39	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019646mg PE=4 SV=1	[more]

BLAST of Lsi02G023130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi02G023130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101033\|ref\|XP_008451394.1\|	1.8e-57	71.43	PREDICTED: uncharacterized protein LOC103492695 [Cucumis melo]	[more]
gi\|778727852\|ref\|XP_011659329.1\|	4.3e-54	65.95	PREDICTED: uncharacterized protein LOC105436166 [Cucumis sativus]	[more]
gi\|595799859\|ref\|XP_007201588.1\|	1.2e-08	33.15	hypothetical protein PRUPE_ppa020433mg, partial [Prunus persica]	[more]
gi\|645258820\|ref\|XP_008235064.1\|	1.6e-08	32.95	PREDICTED: uncharacterized protein LOC103333926 [Prunus mume]	[more]
gi\|595817058\|ref\|XP_007204155.1\|	1.1e-06	32.39	hypothetical protein PRUPE_ppa019646mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0030001	metal ion transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005618	cell wall
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G023130.1	Lsi02G023130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi02G023130	Csa7G392370	Cucumber (Chinese Long) v2	culsiB509
Lsi02G023130	CSPI07G16800	Wild cucumber (PI 183967)	cpilsiB523
Lsi02G023130	CmaCh17G011570	Cucurbita maxima (Rimu)	cmalsiB348
Lsi02G023130	CmoCh17G011330	Cucurbita moschata (Rifu)	cmolsiB337
Lsi02G023130	Cla014740	Watermelon (97103) v1	lsiwmB175
Lsi02G023130	MELO3C015862	Melon (DHL92) v3.5.1	lsimeB186
Lsi02G023130	ClCG09G006850	Watermelon (Charleston Gray)	lsiwcgB159
Lsi02G023130	MELO3C015862.2	Melon (DHL92) v3.6.1	lsimedB195
Lsi02G023130	Cla97C09G169420	Watermelon (97103) v2	lsiwmbB212
Lsi02G023130	Bhi09G000842	Wax gourd	lsiwgoB282
Lsi02G023130	Cp4.1LG12g12010	Cucurbita pepo (Zucchini)	cpelsiB113
Lsi02G023130	Carg07230	Silver-seed gourd	carlsiB098
Lsi02G023130	CsaV3_7G028570	Cucumber (Chinese Long) v3	cuclsiB543

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi02G023130	Wild cucumber (PI 183967)	cpilsiB517
Lsi02G023130	Cucumber (Chinese Long) v2	culsiB503
Lsi02G023130	Melon (DHL92) v3.5.1	lsimeB222
Lsi02G023130	Cucumber (Gy14) v2	cgyblsiB157
Lsi02G023130	Cucumber (Gy14) v2	cgyblsiB472
Lsi02G023130	Cucumber (Gy14) v2	cgyblsiB477
Lsi02G023130	Melon (DHL92) v3.6.1	lsimedB232
Lsi02G023130	Silver-seed gourd	carlsiB782
Lsi02G023130	Cucumber (Chinese Long) v3	cuclsiB189
Lsi02G023130	Cucumber (Chinese Long) v3	cuclsiB538
Lsi02G023130	Cucumber (Gy14) v1	cgylsiB090
Lsi02G023130	Cucumber (Gy14) v1	cgylsiB091
Lsi02G023130	Cucurbita maxima (Rimu)	cmalsiB749
Lsi02G023130	Cucurbita maxima (Rimu)	cmalsiB822
Lsi02G023130	Cucurbita moschata (Rifu)	cmolsiB742
Lsi02G023130	Cucurbita moschata (Rifu)	cmolsiB809
Lsi02G023130	Cucurbita pepo (Zucchini)	cpelsiB498
Lsi02G023130	Cucurbita pepo (Zucchini)	cpelsiB262
Lsi02G023130	Cucurbita pepo (Zucchini)	cpelsiB704