MELO3C015392 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015392
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	tRNA (guanine-N(7)-)-methyltransferase
Location	chr2 : 1302744 .. 1303417 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGTCACCGAGAATGAAGTTGTTGTCAAAACAACTGGTTTTTATTTATTTTATTTATTATTTTTTAAAATTTTGTTTCTTTCTATACTTAAACTCAAGGAATAAAGACACATTTCCTACAGGAGTTGAGTGGAGTCTTGATGGTGATGCTTCAAATGCCACTGTTTTAGTTGCTAGTGAAGCGCATGCAATAACACTGGCTGTCGAGGGCCTATTAGGTGTTGTTTTTACTGTGGCTACTTTAACCGATGAAGCAGTTGACCTTGGGGAGGTATCTTGGTTTTCATTTTACCGTTCTGATATACTTCACACAACCGTGTATTTTGTTGAGATGCTATATGAGATGGGCTAATTGTATGTTGTGTTCTTTTGATATACAGCTTGAATCCCCAAGGTTTGATTATGAACCACCAGGAAAGTGTAATGGAAGAATAGCAAGTGTCTGCATTTCTATGGTTGATTCTTTGTGGCTGACAATACTTGATGCATTGTCCCTTATTCTTACTAGGTACGTTAATTCTTTTTCTCTCCTTCTGTATAGCATGTTCATAACTGGTGCGGAACTTGAATTAAGCTTCTGATGAAAGATCACAGGGAGAGGCTATTATCTTGGAGATATTGAAAGGATATCAAGCTTTCACTCAGGTGATTCCTGTTATCTTATCGTGA

mRNA sequence

ATGGGAGTTGAGTGGAGTCTTGATGGTGATGCTTCAAATGCCACTGTTTTAGTTGCTAGTGAAGCGCATGCAATAACACTGGCTGTCGAGGGCCTATTAGGTGTTGTTTTTACTGTGGCTACTTTAACCGATGAAGCAGTTGACCTTGGGGAGCTTGAATCCCCAAGGTTTGATTATGAACCACCAGGAAAGTGTAATGGAAGAATAGCAAGTGTCTGCATTTCTATGGTTGATTCTTTGTGGCTGACAATACTTGATGCATTGTCCCTTATTCTTACTAGATCACAGGGAGAGGCTATTATCTTGGAGATATTGAAAGGATATCAAGCTTTCACTCAGGTGATTCCTGTTATCTTATCGTGA

Coding sequence (CDS)

ATGGGAGTTGAGTGGAGTCTTGATGGTGATGCTTCAAATGCCACTGTTTTAGTTGCTAGTGAAGCGCATGCAATAACACTGGCTGTCGAGGGCCTATTAGGTGTTGTTTTTACTGTGGCTACTTTAACCGATGAAGCAGTTGACCTTGGGGAGCTTGAATCCCCAAGGTTTGATTATGAACCACCAGGAAAGTGTAATGGAAGAATAGCAAGTGTCTGCATTTCTATGGTTGATTCTTTGTGGCTGACAATACTTGATGCATTGTCCCTTATTCTTACTAGATCACAGGGAGAGGCTATTATCTTGGAGATATTGAAAGGATATCAAGCTTTCACTCAGGTGATTCCTGTTATCTTATCGTGA

Protein sequence

MGVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEPPGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVILS*

Homology

[Close]

BLAST of MELO3C015392 vs. TrEMBL
Match: A0A0A0LW83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G574770 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-55
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP
Sbjct: 72  GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 131

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQ   V+
Sbjct: 132 PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQACGVL 188

[Close]

BLAST of MELO3C015392 vs. TrEMBL
Match: F6HTV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01530 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.4e-47
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EWSLD DASNA VLVASEAHAITLAVEGLLGVVFTVATLTDEAVD+GELESPR D +P
Sbjct: 387 GIEWSLDNDASNAAVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDVGELESPRCDSDP 446

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           P KC G+ A +CISMVDSLWLTILDALSLIL+RSQGEAI+LEILKGYQAFTQ   V+
Sbjct: 447 PAKCTGKTAVLCISMVDSLWLTILDALSLILSRSQGEAIVLEILKGYQAFTQACGVL 503

[Close]

BLAST of MELO3C015392 vs. TrEMBL
Match: M5WNG8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000159mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-46
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EWSLD DASNA VLVASEAH+ITLAVEGLLGVVFTVATLTDEAVD GE+ESPR+DY+P
Sbjct: 384 GIEWSLDNDASNAAVLVASEAHSITLAVEGLLGVVFTVATLTDEAVDSGEIESPRYDYDP 443

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           P KC G  A +C+SMVDSLWLTILDALS IL+RSQGEAI+LEILKGYQAFTQ   V+
Sbjct: 444 PAKCTGNTALLCLSMVDSLWLTILDALSFILSRSQGEAIVLEILKGYQAFTQACGVL 500

[Close]

BLAST of MELO3C015392 vs. TrEMBL
Match: A0A068ULT8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027576001 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.2e-46
Identity = 93/117 (79.49%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EWSLD DASNA VLVASEAH+ITLA+EGLLGVVFTVATLTDEAVD+GE+ESPR+D + 
Sbjct: 515 GIEWSLDNDASNAAVLVASEAHSITLAIEGLLGVVFTVATLTDEAVDVGEIESPRYDSDS 574

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           P KC G+ A++CISMVDS+WLTILDALSLILT+SQGEAI+LEILKGYQAFTQ   V+
Sbjct: 575 PEKCTGKTATLCISMVDSMWLTILDALSLILTKSQGEAIVLEILKGYQAFTQACGVL 631

[Close]

BLAST of MELO3C015392 vs. TrEMBL
Match: A0A059D3A9_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B017252 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.4e-45
Identity = 95/117 (81.20%), Postives = 104/117 (88.89%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EWSLD DASNA VLVASEAHAITLA+EGLLGVVFTVATLTDEAVD+GELESPR  Y+ 
Sbjct: 424 GIEWSLDNDASNAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDIGELESPRSGYDQ 483

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           P KC G+ A +CISMVDSLWL +LDALSLILTRSQGEAI+LEILKGYQAFTQ   V+
Sbjct: 484 PLKCTGKTALLCISMVDSLWLIVLDALSLILTRSQGEAIVLEILKGYQAFTQACGVL 540

[Close]

BLAST of MELO3C015392 vs. TAIR10
Match: AT5G27970.2 (AT5G27970.2 ARM repeat superfamily protein)

HSP 1 Score: 177.6 bits (449), Expect = 4.7e-45
Identity = 89/117 (76.07%), Postives = 101/117 (86.32%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EW LD DAS+A VLVASEAHAITLA+EGLLGVVFTVATLTDEAVD+GELESPR+++ P
Sbjct: 436 GIEWILDNDASSAAVLVASEAHAITLAIEGLLGVVFTVATLTDEAVDVGELESPRYEHLP 495

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
                G+ + +CISMVDSLWLTILDA SLIL+RSQGEAI+LEILKGYQAFTQ   V+
Sbjct: 496 SSDYTGKTSLLCISMVDSLWLTILDAFSLILSRSQGEAIVLEILKGYQAFTQACGVL 552

[Close]

BLAST of MELO3C015392 vs. NCBI nr
Match: gi|778662699|ref|XP_011659941.1| (PREDICTED: protein MON2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP
Sbjct: 424 GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 483

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQ   V+
Sbjct: 484 PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQACGVL 540

[Close]

BLAST of MELO3C015392 vs. NCBI nr
Match: gi|700211064|gb|KGN66160.1| (hypothetical protein Csa_1G574770 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP
Sbjct: 72  GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 131

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQ   V+
Sbjct: 132 PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQACGVL 188

[Close]

BLAST of MELO3C015392 vs. NCBI nr
Match: gi|659099747|ref|XP_008450757.1| (PREDICTED: LOW QUALITY PROTEIN: protein MON2 homolog [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP
Sbjct: 424 GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 483

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQ   V+
Sbjct: 484 PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQACGVL 540

[Close]

BLAST of MELO3C015392 vs. NCBI nr
Match: gi|778662702|ref|XP_011659942.1| (PREDICTED: protein MON2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP
Sbjct: 424 GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 483

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQ   V+
Sbjct: 484 PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQACGVL 540

[Close]

BLAST of MELO3C015392 vs. NCBI nr
Match: gi|298204915|emb|CBI34222.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 98/117 (83.76%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 2   GVEWSLDGDASNATVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDLGELESPRFDYEP 61
           G+EWSLD DASNA VLVASEAHAITLAVEGLLGVVFTVATLTDEAVD+GELESPR D +P
Sbjct: 483 GIEWSLDNDASNAAVLVASEAHAITLAVEGLLGVVFTVATLTDEAVDVGELESPRCDSDP 542

Query: 62  PGKCNGRIASVCISMVDSLWLTILDALSLILTRSQGEAIILEILKGYQAFTQVIPVI 119
           P KC G+ A +CISMVDSLWLTILDALSLIL+RSQGEAI+LEILKGYQAFTQ   V+
Sbjct: 543 PAKCTGKTAVLCISMVDSLWLTILDALSLILSRSQGEAIVLEILKGYQAFTQACGVL 599

The following BLAST results are available for this feature:

BLAST of MELO3C015392 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW83_CUCSA	7.4e-55	96.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G574770 PE=4 SV=1	[more]
F6HTV1_VITVI	7.4e-47	83.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01530 PE=4 SV=...	[more]
M5WNG8_PRUPE	1.3e-46	81.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000159mg PE=4 SV=1	[more]
A0A068ULT8_COFCA	8.2e-46	79.49	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027576001 PE=4 SV=1	[more]
A0A059D3A9_EUCGR	2.4e-45	81.20	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B017252 PE=4...	[more]

BLAST of MELO3C015392 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27970.2	4.7e-45	76.07	ARM repeat superfamily protein	[more]

BLAST of MELO3C015392 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662699\|ref\|XP_011659941.1\|	1.1e-54	96.58	PREDICTED: protein MON2 homolog isoform X1 [Cucumis sativus]	[more]
gi\|700211064\|gb\|KGN66160.1\|	1.1e-54	96.58	hypothetical protein Csa_1G574770 [Cucumis sativus]	[more]
gi\|659099747\|ref\|XP_008450757.1\|	1.1e-54	96.58	PREDICTED: LOW QUALITY PROTEIN: protein MON2 homolog [Cucumis melo]	[more]
gi\|778662702\|ref\|XP_011659942.1\|	1.1e-54	96.58	PREDICTED: protein MON2 homolog isoform X2 [Cucumis sativus]	[more]
gi\|298204915\|emb\|CBI34222.3\|	1.1e-46	83.76	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU62736	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015392T1	MELO3C015392T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62736	MU62736	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015392	Csa1G574770	Cucumber (Chinese Long) v2	cumeB041
MELO3C015392	Cla011280	Watermelon (97103) v1	mewmB271
MELO3C015392	Cla97C03G066590	Watermelon (97103) v2	mewmbB249
MELO3C015392	Bhi02G001651	Wax gourd	mewgoB304
MELO3C015392	Lsi06G002030	Bottle gourd (USVL1VR-Ls)	lsimeB396

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015392	Silver-seed gourd	carmeB0897
MELO3C015392	Cucumber (Chinese Long) v3	cucmeB042
MELO3C015392	Cucumber (Gy14) v1	cgymeB481
MELO3C015392	Cucurbita maxima (Rimu)	cmameB115
MELO3C015392	Cucurbita moschata (Rifu)	cmomeB054
MELO3C015392	Cucurbita moschata (Rifu)	cmomeB107
MELO3C015392	Wild cucumber (PI 183967)	cpimeB042
MELO3C015392	Watermelon (Charleston Gray)	mewcgB245
MELO3C015392	Cucurbita pepo (Zucchini)	cpemeB333
MELO3C015392	Cucurbita pepo (Zucchini)	cpemeB619
MELO3C015392	Cucumber (Gy14) v2	cgybmeB038